RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 C22orf46C9J442 243 aa10.55□□□□□ -0.72
LDLR-203ENST00000535915 IGLV1-47P01700 117 aa10.55□□□□□ -0.72
LDLR-203ENST00000535915 MFAP2P55001 183 aa10.55□□□□□ -0.72
LDLR-203ENST00000535915 COL5A1-AS1Q5SY13 56 aa10.55□□□□□ -0.72
LDLR-203ENST00000535915 ASPHD1Q5U4P2 390 aa10.55□□□□□ -0.72
LDLR-203ENST00000535915 ZFP30Q9Y2G7 519 aa10.55□□□□□ -0.72
LDLR-203ENST00000535915 TRAV34A0A0B4J273 112 aa10.54□□□□□ -0.72
LDLR-203ENST00000535915 IGHV1-3A0A0C4DH29 117 aa10.54□□□□□ -0.72
LDLR-203ENST00000535915 PEX7O00628 323 aa10.54□□□□□ -0.72
LDLR-203ENST00000535915 FSTL3O95633 263 aa10.54□□□□□ -0.72
LDLR-203ENST00000535915 CA1P00915 261 aaPredicted RBP10.54□□□□□ -0.72
LDLR-203ENST00000535915 MT-ND6P03923 174 aa10.54□□□□□ -0.72
LDLR-203ENST00000535915 LINC00310P59036 64 aa10.54□□□□□ -0.72
LDLR-203ENST00000535915 RANP62826 216 aaKnown RBP10.54□□□□□ -0.72
LDLR-203ENST00000535915 PAFAH1B2P68402 229 aa10.54□□□□□ -0.72
LDLR-203ENST00000535915 MRPL54Q6P161 138 aaKnown RBP10.54□□□□□ -0.72
LDLR-203ENST00000535915 CLEC7AQ9BXN2 247 aa10.54□□□□□ -0.72
LDLR-203ENST00000535915 SMIM27A0A1W2PRY6 76 aa10.54□□□□□ -0.72
LDLR-203ENST00000535915 C20orf202A1L168 122 aa10.54□□□□□ -0.72
LDLR-203ENST00000535915 FAM90A27PA6NNH2 459 aa10.54□□□□□ -0.72
LDLR-203ENST00000535915 F2Z2F3 143 aa10.54□□□□□ -0.72
LDLR-203ENST00000535915 BUB1B-PAK6H3BSN5 160 aa10.54□□□□□ -0.72
LDLR-203ENST00000535915 COX7A1P24310 79 aa10.54□□□□□ -0.72
LDLR-203ENST00000535915 LHFPL4Q7Z7J7 247 aa10.54□□□□□ -0.72
LDLR-203ENST00000535915 MUC15Q8N387 334 aa10.54□□□□□ -0.72
LDLR-203ENST00000535915 RNASE8Q8TDE3 154 aaKnown RBP10.54□□□□□ -0.72
LDLR-203ENST00000535915 BLNKQ8WV28 456 aa10.54□□□□□ -0.72
LDLR-203ENST00000535915 PERPQ96FX8 193 aa10.54□□□□□ -0.72
LDLR-203ENST00000535915 SIGLEC9Q9Y336 463 aa10.54□□□□□ -0.72
LDLR-203ENST00000535915 ANKHD1Q8IWZ3 2542 aaKnown RBP10.54□□□□□ -0.72
LDLR-203ENST00000535915 ABCA1O95477 2261 aa10.54□□□□□ -0.72
LDLR-203ENST00000535915 ABCA4P78363 2273 aa10.54□□□□□ -0.72
LDLR-203ENST00000535915 RBX1P62877 108 aa10.54□□□□□ -0.72
LDLR-203ENST00000535915 TMEM136Q6ZRR5 245 aa10.54□□□□□ -0.72
LDLR-203ENST00000535915 SSBP3Q9BWW4 388 aaPredicted RBP10.54□□□□□ -0.72
LDLR-203ENST00000535915 PAM16Q9Y3D7 125 aa10.54□□□□□ -0.72
LDLR-203ENST00000535915 PPIAL4CA0A0B4J2A2 164 aa10.53□□□□□ -0.72
LDLR-203ENST00000535915 CRYGCP07315 174 aa10.53□□□□□ -0.72
LDLR-203ENST00000535915 PPIAL4GP0DN37 164 aa10.53□□□□□ -0.72
LDLR-203ENST00000535915 ESDP10768 282 aa10.53□□□□□ -0.72
LDLR-203ENST00000535915 CD33P20138 364 aa10.53□□□□□ -0.72
LDLR-203ENST00000535915 COMPP49747 757 aaPredicted RBP10.53□□□□□ -0.72
LDLR-203ENST00000535915 Q0VG73 95 aa10.53□□□□□ -0.72
LDLR-203ENST00000535915 KIAA1644Q3SXP7 199 aa10.53□□□□□ -0.72
LDLR-203ENST00000535915 ZNF841Q6ZN19 808 aa10.53□□□□□ -0.72
LDLR-203ENST00000535915 PPP1R27Q86WC6 154 aa10.53□□□□□ -0.72
LDLR-203ENST00000535915 SAMD10Q9BYL1 202 aa10.53□□□□□ -0.72
LDLR-203ENST00000535915 AMY1AP04745 511 aa10.53□□□□□ -0.72
LDLR-203ENST00000535915 CRYGBP07316 175 aa10.53□□□□□ -0.72
LDLR-203ENST00000535915 GNG5P63218 68 aa10.53□□□□□ -0.72
LDLR-203ENST00000535915 COX19Q49B96 90 aa10.53□□□□□ -0.72
LDLR-203ENST00000535915 STXBP6Q8NFX7 210 aa10.53□□□□□ -0.72
LDLR-203ENST00000535915 FAM168AQ92567 244 aa10.53□□□□□ -0.72
LDLR-203ENST00000535915 TRGV9Q99603 122 aa10.53□□□□□ -0.72
LDLR-203ENST00000535915 GNB4Q9HAV0 340 aa10.53□□□□□ -0.72
LDLR-203ENST00000535915 GRNP28799 593 aaKnown RBP10.52□□□□□ -0.73
LDLR-203ENST00000535915 PTTG1IPP53801 180 aa10.52□□□□□ -0.73
LDLR-203ENST00000535915 PRR27Q6MZM9 219 aa10.52□□□□□ -0.73
LDLR-203ENST00000535915 Q6ZWC4 215 aa10.52□□□□□ -0.73
LDLR-203ENST00000535915 TMEM116Q8NCL8 245 aa10.52□□□□□ -0.73
LDLR-203ENST00000535915 RPEQ96AT9 228 aa10.52□□□□□ -0.73
LDLR-203ENST00000535915 HSPB9Q9BQS6 159 aa10.52□□□□□ -0.73
LDLR-203ENST00000535915 SPTA1P02549 2419 aa10.52□□□□□ -0.73
LDLR-203ENST00000535915 ARHGAP32A7KAX9 2087 aa10.52□□□□□ -0.73
LDLR-203ENST00000535915 SLC25A5P05141 298 aaKnown RBP10.52□□□□□ -0.73
LDLR-203ENST00000535915 UBE2G1P62253 170 aa10.52□□□□□ -0.73
LDLR-203ENST00000535915 TMEM183BQ1AE95 376 aa10.52□□□□□ -0.73
LDLR-203ENST00000535915 TDRG1Q3Y452 100 aa10.52□□□□□ -0.73
LDLR-203ENST00000535915 PVRIGQ6DKI7 326 aa10.52□□□□□ -0.73
LDLR-203ENST00000535915 FBXL15Q9H469 300 aa10.52□□□□□ -0.73
LDLR-203ENST00000535915 IZUMO1RA6ND01 250 aa10.51□□□□□ -0.73
LDLR-203ENST00000535915 CORTO00230 105 aa10.51□□□□□ -0.73
LDLR-203ENST00000535915 HYPMO75409 117 aa10.51□□□□□ -0.73
LDLR-203ENST00000535915 LEMD1Q68G75 181 aa10.51□□□□□ -0.73
LDLR-203ENST00000535915 C20orf144Q9BQM9 153 aa10.51□□□□□ -0.73
LDLR-203ENST00000535915 RPH3ALQ9UNE2 315 aa10.51□□□□□ -0.73
LDLR-203ENST00000535915 PGPA6NDG6 321 aa10.51□□□□□ -0.73
LDLR-203ENST00000535915 HLA-DQA1P01909 254 aa10.51□□□□□ -0.73
LDLR-203ENST00000535915 PLGLAQ15195 96 aa10.51□□□□□ -0.73
LDLR-203ENST00000535915 SGK494Q96LW2 274 aa10.51□□□□□ -0.73
LDLR-203ENST00000535915 VAMP8Q9BV40 100 aa10.51□□□□□ -0.73
LDLR-203ENST00000535915 GSX1Q9H4S2 264 aaPredicted RBP10.51□□□□□ -0.73
LDLR-203ENST00000535915 ZNF331Q9NQX6 463 aaPredicted RBP10.51□□□□□ -0.73
LDLR-203ENST00000535915 F11RQ9Y624 299 aaKnown RBP10.51□□□□□ -0.73
LDLR-203ENST00000535915 NBEAP1P0C6P0 100 aa10.5□□□□□ -0.73
LDLR-203ENST00000535915 MYCNOSP40205 109 aa10.5□□□□□ -0.73
LDLR-203ENST00000535915 FAM231DQ6ZW35 169 aa10.5□□□□□ -0.73
LDLR-203ENST00000535915 NUDT10Q8NFP7 164 aa10.5□□□□□ -0.73
LDLR-203ENST00000535915 NUDT11Q96G61 164 aa10.5□□□□□ -0.73
LDLR-203ENST00000535915 ONECUT1Q9UBC0 465 aa10.5□□□□□ -0.73
LDLR-203ENST00000535915 EPDR1Q9UM22 224 aa10.5□□□□□ -0.73
LDLR-203ENST00000535915 TEX22C9J3V5 150 aa10.5□□□□□ -0.73
LDLR-203ENST00000535915 SRIP30626 198 aa10.5□□□□□ -0.73
LDLR-203ENST00000535915 ZNF672Q499Z4 452 aaPredicted RBP10.5□□□□□ -0.73
LDLR-203ENST00000535915 OR10J3Q5JRS4 329 aa10.5□□□□□ -0.73
LDLR-203ENST00000535915 ZNF253O75346 499 aa10.49□□□□□ -0.73
LDLR-203ENST00000535915 SIGLECL1Q8N7X8 197 aa10.49□□□□□ -0.73
LDLR-203ENST00000535915 SRSF12Q8WXF0 261 aaKnown RBP10.49□□□□□ -0.73
LDLR-203ENST00000535915 FAM103A1Q9BTL3 118 aaKnown RBP10.49□□□□□ -0.73
LDLR-203ENST00000535915 H3BTX0 84 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms