RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 OR5G3P0C626 314 aa16.55■□□□□ 0.24
VPS28-212ENST00000530836 GATA2P23769 480 aaPredicted RBP16.55■□□□□ 0.24
VPS28-212ENST00000530836 PSMB3P49720 205 aa16.55■□□□□ 0.24
VPS28-212ENST00000530836 PLP1P60201 277 aa16.55■□□□□ 0.24
VPS28-212ENST00000530836 RHOGP84095 191 aa16.55■□□□□ 0.24
VPS28-212ENST00000530836 TREM1Q9NP99 234 aa16.55■□□□□ 0.24
VPS28-212ENST00000530836 FUT9Q9Y231 359 aa16.55■□□□□ 0.24
VPS28-212ENST00000530836 COX7A2P2O60397 106 aa16.54■□□□□ 0.24
VPS28-212ENST00000530836 CXorf1O96002 111 aa16.54■□□□□ 0.24
VPS28-212ENST00000530836 STAG3L2P0CL84 134 aa16.54■□□□□ 0.24
VPS28-212ENST00000530836 STAG3L3P0CL85 134 aa16.54■□□□□ 0.24
VPS28-212ENST00000530836 PPIFP30405 207 aaKnown RBP16.54■□□□□ 0.24
VPS28-212ENST00000530836 TAS2R45P59539 299 aa16.54■□□□□ 0.24
VPS28-212ENST00000530836 YPEL3P61236 119 aaPredicted RBP16.54■□□□□ 0.24
VPS28-212ENST00000530836 C15orf32Q32M92 178 aa16.54■□□□□ 0.24
VPS28-212ENST00000530836 KRTAP21-3Q3LHN1 58 aa16.54■□□□□ 0.24
VPS28-212ENST00000530836 Q56UQ5 140 aa16.54■□□□□ 0.24
VPS28-212ENST00000530836 FAM78BQ5VT40 261 aa16.54■□□□□ 0.24
VPS28-212ENST00000530836 SEPSECSQ9HD40 501 aaKnown RBP16.54■□□□□ 0.24
VPS28-212ENST00000530836 TRBV7-1A0A0A6YYK4 115 aa16.53■□□□□ 0.24
VPS28-212ENST00000530836 PSMB11A5LHX3 300 aa16.53■□□□□ 0.24
VPS28-212ENST00000530836 ZP3P21754 424 aa16.53■□□□□ 0.24
VPS28-212ENST00000530836 FGF8P55075 233 aaPredicted RBP16.53■□□□□ 0.24
VPS28-212ENST00000530836 TOR2AQ5JU69 321 aa16.53■□□□□ 0.24
VPS28-212ENST00000530836 EEF1AKMT3Q96AZ1 226 aa16.53■□□□□ 0.24
VPS28-212ENST00000530836 NARS2Q96I59 477 aaKnown RBP16.53■□□□□ 0.24
VPS28-212ENST00000530836 IGKV1-17P01599 117 aa16.52■□□□□ 0.24
VPS28-212ENST00000530836 RD3LP0DJH9 198 aa16.52■□□□□ 0.24
VPS28-212ENST00000530836 KRTAP24-1Q3LI83 254 aa16.52■□□□□ 0.24
VPS28-212ENST00000530836 C10orf113Q5VZT2 155 aa16.52■□□□□ 0.24
VPS28-212ENST00000530836 TMEM158Q8WZ71 300 aa16.52■□□□□ 0.24
VPS28-212ENST00000530836 SCRT1Q9BWW7 348 aa16.52■□□□□ 0.24
VPS28-212ENST00000530836 MANBALQ9NQG1 85 aa16.52■□□□□ 0.24
VPS28-212ENST00000530836 TECRQ9NZ01 308 aaKnown RBP16.52■□□□□ 0.24
VPS28-212ENST00000530836 GNG13Q9P2W3 67 aa16.52■□□□□ 0.24
VPS28-212ENST00000530836 TMEM218A2RU14 115 aa16.52■□□□□ 0.23
VPS28-212ENST00000530836 FAM181BA6NEQ2 426 aa16.52■□□□□ 0.23
VPS28-212ENST00000530836 TOMM40O96008 361 aa16.52■□□□□ 0.23
VPS28-212ENST00000530836 SRSF3P84103 164 aaKnown RBP16.52■□□□□ 0.23
VPS28-212ENST00000530836 TIGITQ495A1 244 aa16.52■□□□□ 0.23
VPS28-212ENST00000530836 KHDC3LQ587J8 217 aa16.52■□□□□ 0.23
VPS28-212ENST00000530836 ZNF506Q5JVG8 444 aa16.52■□□□□ 0.23
VPS28-212ENST00000530836 S100A7AQ86SG5 101 aa16.52■□□□□ 0.23
VPS28-212ENST00000530836 ZNF502Q8TBZ5 544 aa16.52■□□□□ 0.23
VPS28-212ENST00000530836 TMEM37Q8WXS4 190 aa16.52■□□□□ 0.23
VPS28-212ENST00000530836 USMG5Q96IX5 58 aa16.52■□□□□ 0.23
VPS28-212ENST00000530836 HMGB3O15347 200 aaKnown RBP16.51■□□□□ 0.23
VPS28-212ENST00000530836 HYPMO75409 117 aa16.51■□□□□ 0.23
VPS28-212ENST00000530836 PSG1P11464 419 aa16.51■□□□□ 0.23
VPS28-212ENST00000530836 RPL15P61313 204 aaKnown RBP16.51■□□□□ 0.23
VPS28-212ENST00000530836 ATP5G2Q06055 141 aa16.51■□□□□ 0.23
VPS28-212ENST00000530836 PQLC2Q6ZP29 291 aa16.51■□□□□ 0.23
VPS28-212ENST00000530836 OR51G1Q8NGK1 321 aa16.51■□□□□ 0.23
VPS28-212ENST00000530836 TMEM89A2RUT3 159 aa16.5■□□□□ 0.23
VPS28-212ENST00000530836 F8W735 103 aaPredicted RBP16.5■□□□□ 0.23
VPS28-212ENST00000530836 BCL2P10415 239 aa16.5■□□□□ 0.23
VPS28-212ENST00000530836 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP16.5■□□□□ 0.23
VPS28-212ENST00000530836 Q8WTZ3 238 aa16.5■□□□□ 0.23
VPS28-212ENST00000530836 LINC00527Q9UJ94 153 aa16.5■□□□□ 0.23
VPS28-212ENST00000530836 NUPL2O15504 423 aaKnown RBP16.49■□□□□ 0.23
VPS28-212ENST00000530836 NDUFS6O75380 124 aaKnown RBP16.49■□□□□ 0.23
VPS28-212ENST00000530836 TRGV3P03979 118 aa16.49■□□□□ 0.23
VPS28-212ENST00000530836 HSPB1P04792 205 aaKnown RBP16.49■□□□□ 0.23
VPS28-212ENST00000530836 C8orf88P0DMB2 117 aa16.49■□□□□ 0.23
VPS28-212ENST00000530836 CFHR3Q02985 330 aa16.49■□□□□ 0.23
VPS28-212ENST00000530836 HAGHQ16775 308 aa16.49■□□□□ 0.23
VPS28-212ENST00000530836 Q6ZS46 218 aa16.49■□□□□ 0.23
VPS28-212ENST00000530836 NOL4LQ96MY1 436 aaPredicted RBP16.49■□□□□ 0.23
VPS28-212ENST00000530836 MS4A10Q96PG2 267 aa16.49■□□□□ 0.23
VPS28-212ENST00000530836 TMEM231Q9H6L2 316 aa16.49■□□□□ 0.23
VPS28-212ENST00000530836 VAX2Q9UIW0 290 aa16.49■□□□□ 0.23
VPS28-212ENST00000530836 LOC102723971A0A1B0GUV8 181 aa16.48■□□□□ 0.23
VPS28-212ENST00000530836 IGLV1-40P01703 118 aa16.48■□□□□ 0.23
VPS28-212ENST00000530836 CRYBA1P05813 215 aa16.48■□□□□ 0.23
VPS28-212ENST00000530836 ARL14EPLP0DKL9 152 aa16.48■□□□□ 0.23
VPS28-212ENST00000530836 ORM2P19652 201 aa16.48■□□□□ 0.23
VPS28-212ENST00000530836 OR1B1Q8NGR6 318 aa16.48■□□□□ 0.23
VPS28-212ENST00000530836 A0A0G2JLM5 398 aa16.48■□□□□ 0.23
VPS28-212ENST00000530836 OR2C1O95371 312 aa16.48■□□□□ 0.23
VPS28-212ENST00000530836 PATE2Q6UY27 113 aa16.48■□□□□ 0.23
VPS28-212ENST00000530836 MIR17HGQ75NE6 70 aa16.48■□□□□ 0.23
VPS28-212ENST00000530836 IQCF2Q8IXL9 164 aa16.48■□□□□ 0.23
VPS28-212ENST00000530836 Q8N2B8 174 aa16.48■□□□□ 0.23
VPS28-212ENST00000530836 STXBP6Q8NFX7 210 aa16.48■□□□□ 0.23
VPS28-212ENST00000530836 LINC00052Q96N35 136 aa16.48■□□□□ 0.23
VPS28-212ENST00000530836 SLC35B3Q9H1N7 401 aa16.48■□□□□ 0.23
VPS28-212ENST00000530836 CTSGP08311 255 aa16.47■□□□□ 0.23
VPS28-212ENST00000530836 TPPP2P59282 170 aa16.47■□□□□ 0.23
VPS28-212ENST00000530836 SPATA31B1PQ5VZV4 182 aa16.47■□□□□ 0.23
VPS28-212ENST00000530836 LINC00305Q7Z4B0 112 aa16.47■□□□□ 0.23
VPS28-212ENST00000530836 RARRES2Q99969 163 aa16.47■□□□□ 0.23
VPS28-212ENST00000530836 TXNDC17Q9BRA2 123 aa16.47■□□□□ 0.23
VPS28-212ENST00000530836 SEC11CQ9BY50 192 aa16.47■□□□□ 0.23
VPS28-212ENST00000530836 ZNF702PQ9H963 129 aa16.47■□□□□ 0.23
VPS28-212ENST00000530836 TMEM167BQ9NRX6 74 aa16.47■□□□□ 0.23
VPS28-212ENST00000530836 DOK5Q9P104 306 aa16.47■□□□□ 0.23
VPS28-212ENST00000530836 HIGD1AQ9Y241 93 aa16.47■□□□□ 0.23
VPS28-212ENST00000530836 S4R3C0 116 aa16.47■□□□□ 0.23
VPS28-212ENST00000530836 COL6A5A8TX70 2615 aa16.47■□□□□ 0.23
VPS28-212ENST00000530836 OR2T8A6NH00 312 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms