RNA–Protein interactions for RNA: ENST00000526313.5

USH1C-204, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best)

Gene USH1C, Length 2,149 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-204ENST00000526313 ZNF329Q86UD4 541 aa12.57□□□□□ -0.4
USH1C-204ENST00000526313 ZNF48Q96MX3 618 aaPredicted RBP12.57□□□□□ -0.4
USH1C-204ENST00000526313 NCBP2LA6PVI3 153 aaKnown RBP12.56□□□□□ -0.4
USH1C-204ENST00000526313 RNF224P0DH78 156 aa12.56□□□□□ -0.4
USH1C-204ENST00000526313 EGR2P11161 476 aaPredicted RBP12.56□□□□□ -0.4
USH1C-204ENST00000526313 TAS2R60P59551 318 aa12.56□□□□□ -0.4
USH1C-204ENST00000526313 TIGITQ495A1 244 aa12.56□□□□□ -0.4
USH1C-204ENST00000526313 Q8N9W7 124 aa12.56□□□□□ -0.4
USH1C-204ENST00000526313 MRPL27Q9P0M9 148 aaKnown RBP12.56□□□□□ -0.4
USH1C-204ENST00000526313 AKAP6Q13023 2319 aa12.56□□□□□ -0.4
USH1C-204ENST00000526313 NDUFS8O00217 210 aa12.56□□□□□ -0.4
USH1C-204ENST00000526313 GCGP01275 180 aa12.56□□□□□ -0.4
USH1C-204ENST00000526313 GP9P14770 177 aa12.56□□□□□ -0.4
USH1C-204ENST00000526313 SAA4P35542 130 aa12.56□□□□□ -0.4
USH1C-204ENST00000526313 CDX1P47902 265 aaPredicted RBP12.56□□□□□ -0.4
USH1C-204ENST00000526313 NDUFA6P56556 154 aa12.56□□□□□ -0.4
USH1C-204ENST00000526313 FAM120AOSQ5T036 256 aa12.56□□□□□ -0.4
USH1C-204ENST00000526313 SGMS2Q8NHU3 365 aa12.56□□□□□ -0.4
USH1C-204ENST00000526313 C10orf105Q8TEF2 133 aa12.56□□□□□ -0.4
USH1C-204ENST00000526313 CCL19Q99731 98 aa12.56□□□□□ -0.4
USH1C-204ENST00000526313 RASL11BQ9BPW5 248 aa12.56□□□□□ -0.4
USH1C-204ENST00000526313 C1RLQ9NZP8 487 aa12.56□□□□□ -0.4
USH1C-204ENST00000526313 CDC42EP3Q9UKI2 254 aa12.56□□□□□ -0.4
USH1C-204ENST00000526313 ASH1LQ9NR48 2969 aaKnown RBP12.56□□□□□ -0.4
USH1C-204ENST00000526313 HLA-DRB1P01911 266 aa12.55□□□□□ -0.4
USH1C-204ENST00000526313 BRS3P32247 399 aa12.55□□□□□ -0.4
USH1C-204ENST00000526313 S100A12P80511 92 aa12.55□□□□□ -0.4
USH1C-204ENST00000526313 KLK9Q2XQG4 91 aa12.55□□□□□ -0.4
USH1C-204ENST00000526313 TMEM14CQ9P0S9 112 aa12.55□□□□□ -0.4
USH1C-204ENST00000526313 KLK9Q9UKQ9 250 aa12.55□□□□□ -0.4
USH1C-204ENST00000526313 HIGD1AQ9Y241 93 aa12.55□□□□□ -0.4
USH1C-204ENST00000526313 TRAV9-1A0A075B6T8 112 aa12.55□□□□□ -0.4
USH1C-204ENST00000526313 IGHV7-81A0A0B4J1V7 117 aa12.55□□□□□ -0.4
USH1C-204ENST00000526313 FABP1P07148 127 aa12.55□□□□□ -0.4
USH1C-204ENST00000526313 RD3LP0DJH9 198 aa12.55□□□□□ -0.4
USH1C-204ENST00000526313 HNF1AP20823 631 aa12.55□□□□□ -0.4
USH1C-204ENST00000526313 CLEC12BQ2HXU8 276 aa12.55□□□□□ -0.4
USH1C-204ENST00000526313 KLF17Q5JT82 389 aaPredicted RBP12.55□□□□□ -0.4
USH1C-204ENST00000526313 PIP4P2Q8N4L2 257 aa12.55□□□□□ -0.4
USH1C-204ENST00000526313 FAM168AQ92567 244 aa12.55□□□□□ -0.4
USH1C-204ENST00000526313 RBM14Q96PK6 669 aaKnown RBP12.55□□□□□ -0.4
USH1C-204ENST00000526313 PIMREGQ9BSJ6 248 aa12.55□□□□□ -0.4
USH1C-204ENST00000526313 IL36BQ9NZH7 164 aa12.55□□□□□ -0.4
USH1C-204ENST00000526313 CENPVL3A0A0U1RRI6 287 aa12.54□□□□□ -0.4
USH1C-204ENST00000526313 IFITM10A6NMD0 228 aa12.54□□□□□ -0.4
USH1C-204ENST00000526313 NPFFO15130 113 aa12.54□□□□□ -0.4
USH1C-204ENST00000526313 NBEAP1P0C6P0 100 aa12.54□□□□□ -0.4
USH1C-204ENST00000526313 CTAG1AP78358 180 aa12.54□□□□□ -0.4
USH1C-204ENST00000526313 ACTL10Q5JWF8 245 aa12.54□□□□□ -0.4
USH1C-204ENST00000526313 OSTCQ9NRP0 149 aa12.54□□□□□ -0.4
USH1C-204ENST00000526313 V9GYV3 84 aa12.54□□□□□ -0.4
USH1C-204ENST00000526313 TRAV30A0A087WSZ9 112 aa12.53□□□□□ -0.4
USH1C-204ENST00000526313 IGHV4-61A0A0C4DH41 118 aa12.53□□□□□ -0.4
USH1C-204ENST00000526313 TOMM40O96008 361 aa12.53□□□□□ -0.4
USH1C-204ENST00000526313 S100A9P06702 114 aaKnown RBP12.53□□□□□ -0.4
USH1C-204ENST00000526313 RPL15P61313 204 aaKnown RBP12.53□□□□□ -0.4
USH1C-204ENST00000526313 SLC25A39Q9BZJ4 359 aaPredicted RBP12.53□□□□□ -0.4
USH1C-204ENST00000526313 SPTAN1Q13813 2472 aaKnown RBP12.53□□□□□ -0.4
USH1C-204ENST00000526313 F8W735 103 aaPredicted RBP12.53□□□□□ -0.4
USH1C-204ENST00000526313 PEX7O00628 323 aa12.53□□□□□ -0.4
USH1C-204ENST00000526313 YPEL3P61236 119 aaPredicted RBP12.53□□□□□ -0.4
USH1C-204ENST00000526313 OR5I1Q13606 314 aa12.53□□□□□ -0.4
USH1C-204ENST00000526313 ZNF491Q8N8L2 437 aa12.53□□□□□ -0.4
USH1C-204ENST00000526313 KLF12Q9Y4X4 402 aa12.53□□□□□ -0.4
USH1C-204ENST00000526313 FLNCQ14315 2725 aa12.52□□□□□ -0.4
USH1C-204ENST00000526313 USP24Q9UPU5 2620 aa12.52□□□□□ -0.4
USH1C-204ENST00000526313 WI2-2373I1.2A0A1W2PRP0 233 aa12.52□□□□□ -0.4
USH1C-204ENST00000526313 ISLRO14498 428 aa12.52□□□□□ -0.4
USH1C-204ENST00000526313 LYZP61626 148 aa12.52□□□□□ -0.4
USH1C-204ENST00000526313 USP9XQ93008 2570 aaPredicted RBP12.52□□□□□ -0.41
USH1C-204ENST00000526313 A0A0U1RQK1 487 aa12.52□□□□□ -0.41
USH1C-204ENST00000526313 ZNF320A2RRD8 509 aa12.52□□□□□ -0.41
USH1C-204ENST00000526313 SMIM6P0DI80 62 aa12.52□□□□□ -0.41
USH1C-204ENST00000526313 CNN1P51911 297 aaKnown RBP12.52□□□□□ -0.41
USH1C-204ENST00000526313 MFAP4P55083 255 aa12.52□□□□□ -0.41
USH1C-204ENST00000526313 RANP62826 216 aaKnown RBP12.52□□□□□ -0.41
USH1C-204ENST00000526313 COA6Q5JTJ3 125 aaKnown RBP12.52□□□□□ -0.41
USH1C-204ENST00000526313 ZNF600Q6ZNG1 722 aa12.52□□□□□ -0.41
USH1C-204ENST00000526313 EPDR1Q9UM22 224 aa12.52□□□□□ -0.41
USH1C-204ENST00000526313 ABCA2Q9BZC7 2435 aa12.51□□□□□ -0.41
USH1C-204ENST00000526313 ERVFC1-1P60608 527 aa12.51□□□□□ -0.41
USH1C-204ENST00000526313 LINC00479Q96M42 142 aa12.51□□□□□ -0.41
USH1C-204ENST00000526313 SHANK2-AS3Q9BTD1 123 aa12.51□□□□□ -0.41
USH1C-204ENST00000526313 SLC17A3O00476 420 aa12.5□□□□□ -0.41
USH1C-204ENST00000526313 FCGR2BP31994 310 aaPredicted RBP12.5□□□□□ -0.41
USH1C-204ENST00000526313 TMEM183BQ1AE95 376 aa12.5□□□□□ -0.41
USH1C-204ENST00000526313 LEMD1Q68G75 181 aa12.5□□□□□ -0.41
USH1C-204ENST00000526313 HIST3H2BBQ8N257 126 aa12.5□□□□□ -0.41
USH1C-204ENST00000526313 TMEM190Q8WZ59 177 aa12.5□□□□□ -0.41
USH1C-204ENST00000526313 TMEM68Q96MH6 324 aa12.5□□□□□ -0.41
USH1C-204ENST00000526313 THYN1Q9P016 225 aa12.5□□□□□ -0.41
USH1C-204ENST00000526313 PITPNC1Q9UKF7 332 aa12.5□□□□□ -0.41
USH1C-204ENST00000526313 COL12A1Q99715 3063 aa12.5□□□□□ -0.41
USH1C-204ENST00000526313 CACNA1BQ00975 2339 aa12.5□□□□□ -0.41
USH1C-204ENST00000526313 PGPA6NDG6 321 aa12.5□□□□□ -0.41
USH1C-204ENST00000526313 H3BRN7 92 aa12.5□□□□□ -0.41
USH1C-204ENST00000526313 HIST1H1EP10412 219 aaKnown RBP12.5□□□□□ -0.41
USH1C-204ENST00000526313 BLNKQ8WV28 456 aa12.5□□□□□ -0.41
USH1C-204ENST00000526313 BBC3Q96PG8 261 aaPredicted RBP12.5□□□□□ -0.41
USH1C-204ENST00000526313 HSPB9Q9BQS6 159 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms