RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 IFNA4P05014 189 aa10.29□□□□□ -0.76
CPSF1-201ENST00000526271 MFAP4P55083 255 aa10.29□□□□□ -0.76
CPSF1-201ENST00000526271 RELQ04864 619 aaPredicted RBP10.29□□□□□ -0.76
CPSF1-201ENST00000526271 MLANAQ16655 118 aa10.29□□□□□ -0.76
CPSF1-201ENST00000526271 ZNF767PQ75MW2 155 aa10.29□□□□□ -0.76
CPSF1-201ENST00000526271 H2BFWTQ7Z2G1 175 aa10.29□□□□□ -0.76
CPSF1-201ENST00000526271 LYZL2Q7Z4W2 148 aa10.29□□□□□ -0.76
CPSF1-201ENST00000526271 FAM219AQ8IW50 185 aa10.29□□□□□ -0.76
CPSF1-201ENST00000526271 SLC35G3Q8N808 338 aa10.29□□□□□ -0.76
CPSF1-201ENST00000526271 COQ8AQ8NI60 647 aa10.29□□□□□ -0.76
CPSF1-201ENST00000526271 FKBP11Q9NYL4 201 aa10.29□□□□□ -0.76
CPSF1-201ENST00000526271 A0A0B4J293 547 aa10.28□□□□□ -0.76
CPSF1-201ENST00000526271 K7EQG2 157 aa10.28□□□□□ -0.76
CPSF1-201ENST00000526271 TCTAP57738 103 aa10.28□□□□□ -0.76
CPSF1-201ENST00000526271 PRCDQ00LT1 54 aa10.28□□□□□ -0.76
CPSF1-201ENST00000526271 C12orf74Q32Q52 190 aa10.28□□□□□ -0.76
CPSF1-201ENST00000526271 NMSQ5H8A3 153 aa10.28□□□□□ -0.76
CPSF1-201ENST00000526271 Q6ZRM9 215 aa10.28□□□□□ -0.76
CPSF1-201ENST00000526271 GPR146Q96CH1 333 aa10.28□□□□□ -0.76
CPSF1-201ENST00000526271 TXN2Q99757 166 aa10.28□□□□□ -0.76
CPSF1-201ENST00000526271 FNDC4Q9H6D8 234 aaPredicted RBP10.28□□□□□ -0.76
CPSF1-201ENST00000526271 GPN1Q9HCN4 374 aaPredicted RBP10.28□□□□□ -0.76
CPSF1-201ENST00000526271 CLEC5AQ9NY25 188 aa10.28□□□□□ -0.76
CPSF1-201ENST00000526271 TMED3Q9Y3Q3 217 aa10.28□□□□□ -0.76
CPSF1-201ENST00000526271 PUS1Q9Y606 427 aaKnown RBP eCLIP10.28□□□□□ -0.76
CPSF1-201ENST00000526271 NACAE9PAV3 2078 aa10.28□□□□□ -0.76
CPSF1-201ENST00000526271 APOBP04114 4563 aaKnown RBP10.28□□□□□ -0.76
CPSF1-201ENST00000526271 TRAV2A0A0B4J234 112 aa10.27□□□□□ -0.77
CPSF1-201ENST00000526271 C7orf66A4D0T2 115 aa10.27□□□□□ -0.77
CPSF1-201ENST00000526271 ST8SIA3O43173 380 aa10.27□□□□□ -0.77
CPSF1-201ENST00000526271 C12orf45Q8N5I9 185 aaPredicted RBP10.27□□□□□ -0.77
CPSF1-201ENST00000526271 DCANP1Q8TF63 244 aa10.27□□□□□ -0.77
CPSF1-201ENST00000526271 PINX1Q96BK5 328 aaKnown RBP10.27□□□□□ -0.77
CPSF1-201ENST00000526271 RRNAD1Q96FB5 475 aaKnown RBP10.27□□□□□ -0.77
CPSF1-201ENST00000526271 TMEM50AO95807 157 aa10.26□□□□□ -0.77
CPSF1-201ENST00000526271 SLC25A6P12236 298 aa10.26□□□□□ -0.77
CPSF1-201ENST00000526271 AKR1C2P52895 323 aa10.26□□□□□ -0.77
CPSF1-201ENST00000526271 CMC4P56277 68 aaPredicted RBP10.26□□□□□ -0.77
CPSF1-201ENST00000526271 HSPE1P61604 102 aaKnown RBP10.26□□□□□ -0.77
CPSF1-201ENST00000526271 AARDQ4LEZ3 155 aa10.26□□□□□ -0.77
CPSF1-201ENST00000526271 C11orf94C9JXX5 98 aa10.25□□□□□ -0.77
CPSF1-201ENST00000526271 GNG7O60262 68 aa10.25□□□□□ -0.77
CPSF1-201ENST00000526271 PITX3O75364 302 aa10.25□□□□□ -0.77
CPSF1-201ENST00000526271 ADAP1O75689 374 aa10.25□□□□□ -0.77
CPSF1-201ENST00000526271 HOXB5P09067 269 aa10.25□□□□□ -0.77
CPSF1-201ENST00000526271 RNASE2P10153 161 aaKnown RBP10.25□□□□□ -0.77
CPSF1-201ENST00000526271 GGNBP1Q5YKI7 109 aa10.25□□□□□ -0.77
CPSF1-201ENST00000526271 OR4A16Q8NH70 328 aa10.25□□□□□ -0.77
CPSF1-201ENST00000526271 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.25□□□□□ -0.77
CPSF1-201ENST00000526271 ALG5Q9Y673 324 aa10.25□□□□□ -0.77
CPSF1-201ENST00000526271 U3KQE9 123 aa10.25□□□□□ -0.77
CPSF1-201ENST00000526271 IGKV1-17P01599 117 aa10.24□□□□□ -0.77
CPSF1-201ENST00000526271 ZNF688P0C7X2 276 aa10.24□□□□□ -0.77
CPSF1-201ENST00000526271 SULT1A3P0DMM9 295 aa10.24□□□□□ -0.77
CPSF1-201ENST00000526271 SULT1A4P0DMN0 295 aa10.24□□□□□ -0.77
CPSF1-201ENST00000526271 CRYBB3P26998 211 aa10.24□□□□□ -0.77
CPSF1-201ENST00000526271 ZNF600Q6ZNG1 722 aa10.24□□□□□ -0.77
CPSF1-201ENST00000526271 LINC00336Q6ZUF6 198 aa10.24□□□□□ -0.77
CPSF1-201ENST00000526271 OR52E5Q8NH55 327 aa10.24□□□□□ -0.77
CPSF1-201ENST00000526271 RNASE11Q8TAA1 199 aaKnown RBP10.24□□□□□ -0.77
CPSF1-201ENST00000526271 TRAV10A0A0B4J240 114 aa10.23□□□□□ -0.77
CPSF1-201ENST00000526271 INS-IGF2F8WCM5 200 aa10.23□□□□□ -0.77
CPSF1-201ENST00000526271 IFNA21P01568 189 aa10.23□□□□□ -0.77
CPSF1-201ENST00000526271 AMBPP02760 352 aa10.23□□□□□ -0.77
CPSF1-201ENST00000526271 MED14OSP0DP75 135 aa10.23□□□□□ -0.77
CPSF1-201ENST00000526271 MIFP14174 115 aa10.23□□□□□ -0.77
CPSF1-201ENST00000526271 SMCO1Q147U7 214 aa10.23□□□□□ -0.77
CPSF1-201ENST00000526271 STHQ8IWL8 128 aa10.23□□□□□ -0.77
CPSF1-201ENST00000526271 RNF126Q9BV68 326 aa10.23□□□□□ -0.77
CPSF1-201ENST00000526271 CACNG5Q9UF02 275 aa10.23□□□□□ -0.77
CPSF1-201ENST00000526271 RABAC1Q9UI14 185 aa10.23□□□□□ -0.77
CPSF1-201ENST00000526271 DNAH5Q8TE73 4624 aa10.23□□□□□ -0.77
CPSF1-201ENST00000526271 PRSS29PA6NIE9 313 aa10.22□□□□□ -0.77
CPSF1-201ENST00000526271 M0R2N4 97 aa10.22□□□□□ -0.77
CPSF1-201ENST00000526271 DNASE2O00115 360 aaPredicted RBP10.22□□□□□ -0.77
CPSF1-201ENST00000526271 P2RY1P47900 373 aa10.22□□□□□ -0.77
CPSF1-201ENST00000526271 BSXQ3C1V8 233 aa10.22□□□□□ -0.77
CPSF1-201ENST00000526271 Q6ZNX1 250 aa10.22□□□□□ -0.77
CPSF1-201ENST00000526271 GRAMD2BQ96HH9 432 aa10.22□□□□□ -0.77
CPSF1-201ENST00000526271 GINS3Q9BRX5 216 aa10.22□□□□□ -0.77
CPSF1-201ENST00000526271 CACFD1Q9UGQ2 172 aa10.22□□□□□ -0.77
CPSF1-201ENST00000526271 DEFB1P60022 68 aa10.21□□□□□ -0.77
CPSF1-201ENST00000526271 SPCS3P61009 180 aa10.21□□□□□ -0.77
CPSF1-201ENST00000526271 PAFAH1B2P68402 229 aa10.21□□□□□ -0.77
CPSF1-201ENST00000526271 ERHP84090 104 aaKnown RBP10.21□□□□□ -0.77
CPSF1-201ENST00000526271 TIGITQ495A1 244 aa10.21□□□□□ -0.77
CPSF1-201ENST00000526271 ACTL10Q5JWF8 245 aa10.21□□□□□ -0.77
CPSF1-201ENST00000526271 GSG1LQ6UXU4 331 aa10.21□□□□□ -0.77
CPSF1-201ENST00000526271 Q6ZR54 194 aa10.21□□□□□ -0.77
CPSF1-201ENST00000526271 ZNF575Q86XF7 245 aa10.21□□□□□ -0.77
CPSF1-201ENST00000526271 POM121L12Q8N7R1 296 aa10.21□□□□□ -0.77
CPSF1-201ENST00000526271 STXBP6Q8NFX7 210 aa10.21□□□□□ -0.77
CPSF1-201ENST00000526271 OR4D5Q8NGN0 318 aa10.21□□□□□ -0.77
CPSF1-201ENST00000526271 TMEM170AQ8WVE7 144 aa10.21□□□□□ -0.77
CPSF1-201ENST00000526271 GLMPQ8WWB7 406 aa10.21□□□□□ -0.77
CPSF1-201ENST00000526271 HSPB7Q9UBY9 170 aa10.21□□□□□ -0.77
CPSF1-201ENST00000526271 DEFB131BA0A096LNP1 70 aa10.2□□□□□ -0.78
CPSF1-201ENST00000526271 FAM90A26D6RGX4 464 aa10.2□□□□□ -0.78
CPSF1-201ENST00000526271 CCSO14618 274 aa10.2□□□□□ -0.78
CPSF1-201ENST00000526271 SSNA1O43805 119 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 145.1 ms