RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 A0A1W2PPI3 338 aa7.45□□□□□ -1.22
LIMCH1-215ENST00000512632 BPIFB3P59826 476 aa7.45□□□□□ -1.22
LIMCH1-215ENST00000512632 ST6GALNAC6Q969X2 333 aa7.45□□□□□ -1.22
LIMCH1-215ENST00000512632 GRAMD2BQ96HH9 432 aa7.45□□□□□ -1.22
LIMCH1-215ENST00000512632 TP73-AS1Q9UF72 201 aa7.45□□□□□ -1.22
LIMCH1-215ENST00000512632 EPDR1Q9UM22 224 aa7.45□□□□□ -1.22
LIMCH1-215ENST00000512632 TIMM8BQ9Y5J9 83 aaPredicted RBP7.45□□□□□ -1.22
LIMCH1-215ENST00000512632 ZFHX2Q9C0A1 2572 aaPredicted RBP7.45□□□□□ -1.22
LIMCH1-215ENST00000512632 C22orf46C9J442 243 aa7.45□□□□□ -1.22
LIMCH1-215ENST00000512632 SUB1P53999 127 aaKnown RBP eCLIP7.45□□□□□ -1.22
LIMCH1-215ENST00000512632 TMEM177Q53S58 311 aa7.45□□□□□ -1.22
LIMCH1-215ENST00000512632 TMEM167AQ8TBQ9 72 aa7.45□□□□□ -1.22
LIMCH1-215ENST00000512632 ALKBH7Q9BT30 221 aaPredicted RBP7.45□□□□□ -1.22
LIMCH1-215ENST00000512632 LINC00574Q9H8X3 128 aa7.45□□□□□ -1.22
LIMCH1-215ENST00000512632 ZNF835Q9Y2P0 537 aa7.45□□□□□ -1.22
LIMCH1-215ENST00000512632 C1orf185Q5T7R7 199 aa7.45□□□□□ -1.22
LIMCH1-215ENST00000512632 OR8B2Q96RD0 313 aa7.45□□□□□ -1.22
LIMCH1-215ENST00000512632 NBEAP1P0C6P0 100 aa7.44□□□□□ -1.22
LIMCH1-215ENST00000512632 FAM87AP0C7U9 286 aa7.44□□□□□ -1.22
LIMCH1-215ENST00000512632 TNFRSF1AP19438 455 aa7.44□□□□□ -1.22
LIMCH1-215ENST00000512632 UNQ5815/PRO19632Q6UWF5 114 aa7.44□□□□□ -1.22
LIMCH1-215ENST00000512632 KLHDC1Q8N7A1 406 aa7.44□□□□□ -1.22
LIMCH1-215ENST00000512632 PGLYRP4Q96LB8 373 aa7.44□□□□□ -1.22
LIMCH1-215ENST00000512632 TRAV8-1A0A0A6YYK1 113 aa7.44□□□□□ -1.22
LIMCH1-215ENST00000512632 HIST1H1EP10412 219 aaKnown RBP7.44□□□□□ -1.22
LIMCH1-215ENST00000512632 PPIAL4EA0A075B759 164 aa7.44□□□□□ -1.22
LIMCH1-215ENST00000512632 C17orf100A8MU93 164 aa7.44□□□□□ -1.22
LIMCH1-215ENST00000512632 PPIAL4DF5H284 164 aa7.44□□□□□ -1.22
LIMCH1-215ENST00000512632 NDUFB8O95169 186 aa7.44□□□□□ -1.22
LIMCH1-215ENST00000512632 PPIAL4FP0DN26 164 aa7.44□□□□□ -1.22
LIMCH1-215ENST00000512632 TEX36Q5VZQ5 186 aa7.44□□□□□ -1.22
LIMCH1-215ENST00000512632 VSTM2AQ8TAG5 236 aa7.44□□□□□ -1.22
LIMCH1-215ENST00000512632 ZFP30Q9Y2G7 519 aa7.44□□□□□ -1.22
LIMCH1-215ENST00000512632 WNK2Q9Y3S1 2297 aa7.44□□□□□ -1.22
LIMCH1-215ENST00000512632 FAM181BA6NEQ2 426 aa7.44□□□□□ -1.22
LIMCH1-215ENST00000512632 ADIPOQQ15848 244 aa7.44□□□□□ -1.22
LIMCH1-215ENST00000512632 MRPL52Q86TS9 123 aaKnown RBP7.44□□□□□ -1.22
LIMCH1-215ENST00000512632 ASCL2Q99929 193 aa7.44□□□□□ -1.22
LIMCH1-215ENST00000512632 MCRIP2Q9BUT9 160 aaKnown RBP7.44□□□□□ -1.22
LIMCH1-215ENST00000512632 IGLL1P15814 213 aa7.43□□□□□ -1.22
LIMCH1-215ENST00000512632 CNTFRP26992 372 aa7.43□□□□□ -1.22
LIMCH1-215ENST00000512632 TMEM108Q6UXF1 575 aa7.43□□□□□ -1.22
LIMCH1-215ENST00000512632 FAM231DQ6ZW35 169 aa7.43□□□□□ -1.22
LIMCH1-215ENST00000512632 MRPL27Q9P0M9 148 aaKnown RBP7.43□□□□□ -1.22
LIMCH1-215ENST00000512632 WASHC3Q9Y3C0 194 aa7.43□□□□□ -1.22
LIMCH1-215ENST00000512632 NDUFB3O43676 98 aa7.43□□□□□ -1.22
LIMCH1-215ENST00000512632 TSPOP30536 169 aa7.43□□□□□ -1.22
LIMCH1-215ENST00000512632 ZNF138P52744 262 aa7.43□□□□□ -1.22
LIMCH1-215ENST00000512632 GAGE1Q13065 139 aa7.43□□□□□ -1.22
LIMCH1-215ENST00000512632 LINC00173Q6ZV60 143 aa7.43□□□□□ -1.22
LIMCH1-215ENST00000512632 SSX8Q7RTT4 187 aa7.43□□□□□ -1.22
LIMCH1-215ENST00000512632 GPR82Q96P67 336 aa7.43□□□□□ -1.22
LIMCH1-215ENST00000512632 RAI1Q7Z5J4 1906 aaPredicted RBP7.43□□□□□ -1.22
LIMCH1-215ENST00000512632 ANKRD11Q6UB99 2663 aaPredicted RBP7.43□□□□□ -1.22
LIMCH1-215ENST00000512632 FSTL3O95633 263 aa7.43□□□□□ -1.22
LIMCH1-215ENST00000512632 Q71RC1 249 aaPredicted RBP7.43□□□□□ -1.22
LIMCH1-215ENST00000512632 SPATA12Q7Z6I5 190 aa7.43□□□□□ -1.22
LIMCH1-215ENST00000512632 PERPQ96FX8 193 aa7.43□□□□□ -1.22
LIMCH1-215ENST00000512632 H0Y8G0 127 aa7.43□□□□□ -1.22
LIMCH1-215ENST00000512632 IGLV2-23P01705 113 aa7.43□□□□□ -1.22
LIMCH1-215ENST00000512632 MEF2CQ06413 473 aaPredicted RBP7.43□□□□□ -1.22
LIMCH1-215ENST00000512632 C21orf62-AS1Q17RA5 79 aa7.43□□□□□ -1.22
LIMCH1-215ENST00000512632 VMA21Q3ZAQ7 101 aa7.43□□□□□ -1.22
LIMCH1-215ENST00000512632 ERASQ7Z444 233 aa7.43□□□□□ -1.22
LIMCH1-215ENST00000512632 KALRNO60229 2985 aa7.42□□□□□ -1.22
LIMCH1-215ENST00000512632 CTSZQ9UBR2 303 aa7.42□□□□□ -1.22
LIMCH1-215ENST00000512632 CACNA1BQ00975 2339 aa7.42□□□□□ -1.22
LIMCH1-215ENST00000512632 C2orf70A6NJV1 201 aa7.42□□□□□ -1.22
LIMCH1-215ENST00000512632 BTF3P20290 206 aaKnown RBP7.42□□□□□ -1.22
LIMCH1-215ENST00000512632 BSPH1Q075Z2 132 aa7.42□□□□□ -1.22
LIMCH1-215ENST00000512632 WIPF2Q8TF74 440 aaPredicted RBP7.42□□□□□ -1.22
LIMCH1-215ENST00000512632 GTSF1Q8WW33 167 aa7.42□□□□□ -1.22
LIMCH1-215ENST00000512632 DAZAP1Q96EP5 407 aaKnown RBP7.42□□□□□ -1.22
LIMCH1-215ENST00000512632 URB1-AS1Q96HZ7 61 aa7.42□□□□□ -1.22
LIMCH1-215ENST00000512632 C7orf69Q9H7B7 122 aa7.42□□□□□ -1.22
LIMCH1-215ENST00000512632 TRAV9-2A0A087WT02 112 aa7.42□□□□□ -1.22
LIMCH1-215ENST00000512632 P01737 135 aa7.42□□□□□ -1.22
LIMCH1-215ENST00000512632 CSN3P07498 182 aa7.42□□□□□ -1.22
LIMCH1-215ENST00000512632 TMEM186Q96B77 213 aa7.42□□□□□ -1.22
LIMCH1-215ENST00000512632 TACC2O95359 2948 aa7.42□□□□□ -1.22
LIMCH1-215ENST00000512632 TMEM30BQ3MIR4 351 aa7.42□□□□□ -1.22
LIMCH1-215ENST00000512632 LRRC10Q5BKY1 277 aa7.42□□□□□ -1.22
LIMCH1-215ENST00000512632 CIARTQ8N365 385 aaPredicted RBP7.42□□□□□ -1.22
LIMCH1-215ENST00000512632 CHRDL1Q9BU40 450 aa7.42□□□□□ -1.22
LIMCH1-215ENST00000512632 TMEM178BH3BS89 294 aa7.41□□□□□ -1.22
LIMCH1-215ENST00000512632 LINC00614P0C842 121 aa7.41□□□□□ -1.22
LIMCH1-215ENST00000512632 MYCNOSP40205 109 aa7.41□□□□□ -1.22
LIMCH1-215ENST00000512632 RPL27AP46776 148 aaKnown RBP7.41□□□□□ -1.22
LIMCH1-215ENST00000512632 PTTG1IPP53801 180 aa7.41□□□□□ -1.22
LIMCH1-215ENST00000512632 PIP4P1Q86T03 277 aa7.41□□□□□ -1.22
LIMCH1-215ENST00000512632 THAP8Q8NA92 274 aa7.41□□□□□ -1.22
LIMCH1-215ENST00000512632 ZNF596Q8TC21 504 aa7.41□□□□□ -1.22
LIMCH1-215ENST00000512632 RPP21Q9H633 154 aaKnown RBP7.41□□□□□ -1.22
LIMCH1-215ENST00000512632 ATMQ13315 3056 aa7.41□□□□□ -1.22
LIMCH1-215ENST00000512632 IGLC7A0M8Q6 106 aa7.41□□□□□ -1.22
LIMCH1-215ENST00000512632 A8MWL6 223 aa7.41□□□□□ -1.22
LIMCH1-215ENST00000512632 C16orf97H3BN30 126 aa7.41□□□□□ -1.22
LIMCH1-215ENST00000512632 LYZP61626 148 aa7.41□□□□□ -1.22
LIMCH1-215ENST00000512632 HBBP68871 147 aa7.41□□□□□ -1.22
LIMCH1-215ENST00000512632 EXOC3-AS1Q8N2X6 119 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms