RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 ACY3Q96HD9 319 aa10.54□□□□□ -0.72
HMGCS1-203ENST00000507004 SLC35E1Q96K37 410 aa10.54□□□□□ -0.72
HMGCS1-203ENST00000507004 CIB3Q96Q77 187 aaPredicted RBP10.54□□□□□ -0.72
HMGCS1-203ENST00000507004 NRN1Q9NPD7 142 aa10.54□□□□□ -0.72
HMGCS1-203ENST00000507004 FBXL17Q9UF56 701 aa10.54□□□□□ -0.72
HMGCS1-203ENST00000507004 BUB3O43684 328 aa10.53□□□□□ -0.72
HMGCS1-203ENST00000507004 CFDP00746 253 aaPredicted RBP10.53□□□□□ -0.72
HMGCS1-203ENST00000507004 FAM24BQ8N5W8 94 aa10.53□□□□□ -0.72
HMGCS1-203ENST00000507004 LRTM2Q8N967 370 aa10.53□□□□□ -0.72
HMGCS1-203ENST00000507004 C2CD4CQ8TF44 421 aa10.53□□□□□ -0.72
HMGCS1-203ENST00000507004 TMEM170AQ8WVE7 144 aa10.53□□□□□ -0.72
HMGCS1-203ENST00000507004 ZFP92A6NM28 416 aa10.52□□□□□ -0.73
HMGCS1-203ENST00000507004 ZNF705EA8MWA4 302 aaPredicted RBP10.52□□□□□ -0.73
HMGCS1-203ENST00000507004 PSG1P11464 419 aa10.52□□□□□ -0.73
HMGCS1-203ENST00000507004 SUPT4H1P63272 117 aaKnown RBP10.52□□□□□ -0.73
HMGCS1-203ENST00000507004 USF2Q15853 346 aaPredicted RBP10.52□□□□□ -0.73
HMGCS1-203ENST00000507004 ACTL10Q5JWF8 245 aa10.52□□□□□ -0.73
HMGCS1-203ENST00000507004 C1orf194Q5T5A4 169 aa10.52□□□□□ -0.73
HMGCS1-203ENST00000507004 SIGLEC15Q6ZMC9 328 aa10.52□□□□□ -0.73
HMGCS1-203ENST00000507004 LYZL2Q7Z4W2 148 aa10.52□□□□□ -0.73
HMGCS1-203ENST00000507004 RNF125Q96EQ8 232 aa10.52□□□□□ -0.73
HMGCS1-203ENST00000507004 RBKSQ9H477 322 aa10.52□□□□□ -0.73
HMGCS1-203ENST00000507004 TMED3Q9Y3Q3 217 aa10.52□□□□□ -0.73
HMGCS1-203ENST00000507004 ALMS1Q8TCU4 4167 aa10.52□□□□□ -0.73
HMGCS1-203ENST00000507004 SNRPGP15A8MWD9 76 aa10.51□□□□□ -0.73
HMGCS1-203ENST00000507004 ID1P41134 155 aa10.51□□□□□ -0.73
HMGCS1-203ENST00000507004 PYDC2Q56P42 97 aa10.51□□□□□ -0.73
HMGCS1-203ENST00000507004 PSMG4Q5JS54 123 aa10.51□□□□□ -0.73
HMGCS1-203ENST00000507004 Q8NAQ8 132 aa10.51□□□□□ -0.73
HMGCS1-203ENST00000507004 RAB40CQ96S21 281 aa10.51□□□□□ -0.73
HMGCS1-203ENST00000507004 BIRC6Q9NR09 4857 aa10.51□□□□□ -0.73
HMGCS1-203ENST00000507004 PITX3O75364 302 aa10.5□□□□□ -0.73
HMGCS1-203ENST00000507004 NXPH3O95157 252 aa10.5□□□□□ -0.73
HMGCS1-203ENST00000507004 NKX2-1P43699 371 aaPredicted RBP10.5□□□□□ -0.73
HMGCS1-203ENST00000507004 NANOS2P60321 138 aaKnown RBP10.5□□□□□ -0.73
HMGCS1-203ENST00000507004 UBE2MP61081 183 aaKnown RBP10.5□□□□□ -0.73
HMGCS1-203ENST00000507004 SPATA31B1PQ5VZV4 182 aa10.5□□□□□ -0.73
HMGCS1-203ENST00000507004 TMED4Q7Z7H5 227 aa10.5□□□□□ -0.73
HMGCS1-203ENST00000507004 TRIM63Q969Q1 353 aa10.5□□□□□ -0.73
HMGCS1-203ENST00000507004 TBC1D24Q9ULP9 559 aa10.5□□□□□ -0.73
HMGCS1-203ENST00000507004 KNCNA6PVL3 124 aa10.49□□□□□ -0.73
HMGCS1-203ENST00000507004 GIG44P09565 113 aaPredicted RBP10.49□□□□□ -0.73
HMGCS1-203ENST00000507004 VAMP1P23763 118 aa10.49□□□□□ -0.73
HMGCS1-203ENST00000507004 GAMTQ14353 236 aa10.49□□□□□ -0.73
HMGCS1-203ENST00000507004 GGNBP1Q5YKI7 109 aa10.49□□□□□ -0.73
HMGCS1-203ENST00000507004 TRGV9Q99603 122 aa10.49□□□□□ -0.73
HMGCS1-203ENST00000507004 SLC45A2Q9UMX9 530 aa10.49□□□□□ -0.73
HMGCS1-203ENST00000507004 HYDINQ4G0P3 5121 aa10.49□□□□□ -0.73
HMGCS1-203ENST00000507004 IGHV4-28A0A0C4DH34 117 aa10.48□□□□□ -0.73
HMGCS1-203ENST00000507004 CCDC160A6NGH7 325 aa10.48□□□□□ -0.73
HMGCS1-203ENST00000507004 SFT2D2O95562 160 aa10.48□□□□□ -0.73
HMGCS1-203ENST00000507004 HLA-DRB4P13762 266 aa10.48□□□□□ -0.73
HMGCS1-203ENST00000507004 MEOX2P50222 304 aa10.48□□□□□ -0.73
HMGCS1-203ENST00000507004 SPANXN2Q5MJ10 180 aa10.48□□□□□ -0.73
HMGCS1-203ENST00000507004 CLUHP3Q96NS8 147 aa10.48□□□□□ -0.73
HMGCS1-203ENST00000507004 PBDC1Q9BVG4 233 aa10.48□□□□□ -0.73
HMGCS1-203ENST00000507004 PRR13Q9NZ81 148 aa10.48□□□□□ -0.73
HMGCS1-203ENST00000507004 HLA-DRB4X5D2U9 266 aa10.48□□□□□ -0.73
HMGCS1-203ENST00000507004 AGRNO00468 2067 aa10.47□□□□□ -0.73
HMGCS1-203ENST00000507004 TRAV10A0A0B4J240 114 aa10.47□□□□□ -0.73
HMGCS1-203ENST00000507004 NAP1L6A6NFF2 107 aa10.47□□□□□ -0.73
HMGCS1-203ENST00000507004 H3BMM0 161 aa10.47□□□□□ -0.73
HMGCS1-203ENST00000507004 ZNF701M0R085 212 aaPredicted RBP10.47□□□□□ -0.73
HMGCS1-203ENST00000507004 C4BPBP20851 252 aa10.47□□□□□ -0.73
HMGCS1-203ENST00000507004 INPP1P49441 399 aa10.47□□□□□ -0.73
HMGCS1-203ENST00000507004 PSMB3P49720 205 aa10.47□□□□□ -0.73
HMGCS1-203ENST00000507004 CSNK1G2-AS1Q8NCQ2 148 aa10.47□□□□□ -0.73
HMGCS1-203ENST00000507004 PPP1R14BQ96C90 147 aa10.47□□□□□ -0.73
HMGCS1-203ENST00000507004 V9GYH0 126 aa10.47□□□□□ -0.73
HMGCS1-203ENST00000507004 EPPK1P58107 5090 aaKnown RBP10.47□□□□□ -0.73
HMGCS1-203ENST00000507004 TEX48A0A1B0GUV7 120 aa10.46□□□□□ -0.73
HMGCS1-203ENST00000507004 TMEM189A5PLL7 270 aa10.46□□□□□ -0.73
HMGCS1-203ENST00000507004 SMIM9A6NGZ8 99 aa10.46□□□□□ -0.73
HMGCS1-203ENST00000507004 SYNGR2O43760 224 aa10.46□□□□□ -0.73
HMGCS1-203ENST00000507004 FOXI2Q6ZQN5 318 aa10.46□□□□□ -0.73
HMGCS1-203ENST00000507004 S100A7AQ86SG5 101 aa10.46□□□□□ -0.73
HMGCS1-203ENST00000507004 CCDC190Q86UF4 302 aa10.46□□□□□ -0.73
HMGCS1-203ENST00000507004 OR8I2Q8N0Y5 310 aa10.46□□□□□ -0.73
HMGCS1-203ENST00000507004 THAP8Q8NA92 274 aa10.46□□□□□ -0.73
HMGCS1-203ENST00000507004 COQ8AQ8NI60 647 aa10.46□□□□□ -0.73
HMGCS1-203ENST00000507004 NEU1Q99519 415 aa10.46□□□□□ -0.73
HMGCS1-203ENST00000507004 X6R8D5 127 aa10.46□□□□□ -0.73
HMGCS1-203ENST00000507004 IGKV1D-37A0A075B6S9 117 aa10.45□□□□□ -0.74
HMGCS1-203ENST00000507004 ISLRO14498 428 aa10.45□□□□□ -0.74
HMGCS1-203ENST00000507004 DEFB4AO15263 64 aa10.45□□□□□ -0.74
HMGCS1-203ENST00000507004 RBMY1A1P0DJD3 496 aaKnown RBP10.45□□□□□ -0.74
HMGCS1-203ENST00000507004 RBMY1CP0DJD4 496 aa10.45□□□□□ -0.74
HMGCS1-203ENST00000507004 HLA-DMBP28068 263 aa10.45□□□□□ -0.74
HMGCS1-203ENST00000507004 LYZP61626 148 aa10.45□□□□□ -0.74
HMGCS1-203ENST00000507004 RBMY1FQ15415 496 aaKnown RBP10.45□□□□□ -0.74
HMGCS1-203ENST00000507004 CNPY1Q3B7I2 92 aa10.45□□□□□ -0.74
HMGCS1-203ENST00000507004 GPR82Q96P67 336 aa10.45□□□□□ -0.74
HMGCS1-203ENST00000507004 PAIP2BQ9ULR5 123 aaKnown RBP10.45□□□□□ -0.74
HMGCS1-203ENST00000507004 RNF24Q9Y225 148 aa10.45□□□□□ -0.74
HMGCS1-203ENST00000507004 IGLL5B9A064 214 aa10.44□□□□□ -0.74
HMGCS1-203ENST00000507004 IAPPP10997 89 aa10.44□□□□□ -0.74
HMGCS1-203ENST00000507004 GALR1P47211 349 aa10.44□□□□□ -0.74
HMGCS1-203ENST00000507004 ZNF90Q03938 601 aa10.44□□□□□ -0.74
HMGCS1-203ENST00000507004 PPP1R1AQ13522 171 aa10.44□□□□□ -0.74
HMGCS1-203ENST00000507004 ZNF79Q15937 498 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms