RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 NAA38Q9BRA0 125 aaKnown RBP4.25□□□□□ -1.73
USP54-216ENST00000498143 FBXL7Q9UJT9 491 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 CES1P1Q9UKY3 287 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 IER3IP1Q9Y5U9 82 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 PXMP4Q9Y6I8 212 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 FREM3P0C091 2139 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 TEX48A0A1B0GUV7 120 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 CD160O95971 181 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 HLA-DQA1P01909 254 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 CDAP32320 146 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 SUB1P53999 127 aaKnown RBP eCLIP4.25□□□□□ -1.73
USP54-216ENST00000498143 RBM3P98179 157 aaKnown RBP4.25□□□□□ -1.73
USP54-216ENST00000498143 EWSR1Q01844 656 aaKnown RBP eCLIP4.25□□□□□ -1.73
USP54-216ENST00000498143 MPV17L2Q567V2 206 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 GFI1BQ5VTD9 330 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 DMKNQ6E0U4 476 aaPredicted RBP4.25□□□□□ -1.73
USP54-216ENST00000498143 SMIM8Q96KF7 97 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 ZNF665Q9H7R5 613 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 SAP30LQ9HAJ7 183 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 MANBALQ9NQG1 85 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 TRIOO75962 3097 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 A0A087WUU8 490 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 BCL2P10415 239 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 SRSF3P84103 164 aaKnown RBP4.25□□□□□ -1.73
USP54-216ENST00000498143 COL10A1Q03692 680 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 C9orf106Q8NAJ2 232 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 RCHY1Q96PM5 261 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 RCL1Q9Y2P8 373 aaKnown RBP4.25□□□□□ -1.73
USP54-216ENST00000498143 LSM4Q9Y4Z0 139 aaKnown RBP4.25□□□□□ -1.73
USP54-216ENST00000498143 SMAD5-AS1Q9Y6J3 95 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 VCYO14598 125 aa4.24□□□□□ -1.73
USP54-216ENST00000498143 CCL3P10147 92 aa4.24□□□□□ -1.73
USP54-216ENST00000498143 ZNF133P52736 654 aaPredicted RBP4.24□□□□□ -1.73
USP54-216ENST00000498143 IBA57Q5T440 356 aaKnown RBP4.24□□□□□ -1.73
USP54-216ENST00000498143 CYB561D1Q8N8Q1 229 aa4.24□□□□□ -1.73
USP54-216ENST00000498143 SPTSSAQ969W0 71 aa4.24□□□□□ -1.73
USP54-216ENST00000498143 CHST6Q9GZX3 395 aa4.24□□□□□ -1.73
USP54-216ENST00000498143 MRPS18AQ9NVS2 196 aaKnown RBP4.24□□□□□ -1.73
USP54-216ENST00000498143 DSCAMO60469 2012 aa4.24□□□□□ -1.73
USP54-216ENST00000498143 FAM236DA0A1B0GTK5 79 aa4.24□□□□□ -1.73
USP54-216ENST00000498143 CXorf51AA0A1B0GTR3 108 aa4.24□□□□□ -1.73
USP54-216ENST00000498143 A0A1W2PPV9 198 aa4.24□□□□□ -1.73
USP54-216ENST00000498143 FAM231BA6NCW3 169 aa4.24□□□□□ -1.73
USP54-216ENST00000498143 UQCRQO14949 82 aa4.24□□□□□ -1.73
USP54-216ENST00000498143 GPR75O95800 540 aa4.24□□□□□ -1.73
USP54-216ENST00000498143 FAM236CP0DP71 79 aa4.24□□□□□ -1.73
USP54-216ENST00000498143 CTLA4P16410 223 aa4.24□□□□□ -1.73
USP54-216ENST00000498143 OPRK1P41145 380 aa4.24□□□□□ -1.73
USP54-216ENST00000498143 PPICP45877 212 aa4.24□□□□□ -1.73
USP54-216ENST00000498143 ZNF672Q499Z4 452 aaPredicted RBP4.24□□□□□ -1.73
USP54-216ENST00000498143 CENPWQ5EE01 88 aa4.24□□□□□ -1.73
USP54-216ENST00000498143 FAM19A5Q7Z5A7 132 aaPredicted RBP4.24□□□□□ -1.73
USP54-216ENST00000498143 DLX4Q92988 240 aaPredicted RBP4.24□□□□□ -1.73
USP54-216ENST00000498143 TRBV24-1A0A075B6N3 115 aa4.24□□□□□ -1.73
USP54-216ENST00000498143 CD300LBA8K4G0 201 aa4.24□□□□□ -1.73
USP54-216ENST00000498143 CST7O76096 145 aa4.24□□□□□ -1.73
USP54-216ENST00000498143 GP9P14770 177 aa4.24□□□□□ -1.73
USP54-216ENST00000498143 BTCP35070 178 aa4.24□□□□□ -1.73
USP54-216ENST00000498143 GUSBP1Q15486 140 aa4.24□□□□□ -1.73
USP54-216ENST00000498143 CXorf66Q5JRM2 361 aaPredicted RBP4.24□□□□□ -1.73
USP54-216ENST00000498143 S100A7L2Q5SY68 101 aa4.24□□□□□ -1.73
USP54-216ENST00000498143 HRCT1Q6UXD1 115 aa4.24□□□□□ -1.73
USP54-216ENST00000498143 AAED1Q7RTV5 226 aa4.24□□□□□ -1.73
USP54-216ENST00000498143 TMEM230Q96A57 120 aa4.24□□□□□ -1.73
USP54-216ENST00000498143 APOBEC3DQ96AK3 386 aaPredicted RBP4.24□□□□□ -1.73
USP54-216ENST00000498143 ZNF681Q96N22 645 aa4.24□□□□□ -1.73
USP54-216ENST00000498143 CMC2Q9NRP2 79 aa4.24□□□□□ -1.73
USP54-216ENST00000498143 SNURFLB1AK76 121 aa4.23□□□□□ -1.73
USP54-216ENST00000498143 LEPROTL1O95214 131 aa4.23□□□□□ -1.73
USP54-216ENST00000498143 MYOD1P15172 320 aa4.23□□□□□ -1.73
USP54-216ENST00000498143 NDUFV3P56181 108 aaKnown RBP4.23□□□□□ -1.73
USP54-216ENST00000498143 TMEM50BP56557 158 aa4.23□□□□□ -1.73
USP54-216ENST00000498143 TMEM255AQ5JRV8 349 aa4.23□□□□□ -1.73
USP54-216ENST00000498143 IGFL2Q6UWQ7 119 aa4.23□□□□□ -1.73
USP54-216ENST00000498143 LINC00305Q7Z4B0 112 aa4.23□□□□□ -1.73
USP54-216ENST00000498143 DEFB108BQ8NET1 73 aa4.23□□□□□ -1.73
USP54-216ENST00000498143 MYEOVQ96EZ4 313 aa4.23□□□□□ -1.73
USP54-216ENST00000498143 COQ2Q96H96 371 aa4.23□□□□□ -1.73
USP54-216ENST00000498143 HIST1H4GQ99525 98 aa4.23□□□□□ -1.73
USP54-216ENST00000498143 WFDC1Q9HC57 220 aa4.23□□□□□ -1.73
USP54-216ENST00000498143 B9D1Q9UPM9 204 aa4.23□□□□□ -1.73
USP54-216ENST00000498143 C11orf98E9PRG8 122 aa4.23□□□□□ -1.73
USP54-216ENST00000498143 LY6HO94772 140 aa4.23□□□□□ -1.73
USP54-216ENST00000498143 ADCYAP1P18509 176 aa4.23□□□□□ -1.73
USP54-216ENST00000498143 NMUP48645 174 aa4.23□□□□□ -1.73
USP54-216ENST00000498143 CD164Q04900 197 aa4.23□□□□□ -1.73
USP54-216ENST00000498143 DGAT2L6Q6ZPD8 337 aa4.23□□□□□ -1.73
USP54-216ENST00000498143 NEURL3Q96EH8 262 aa4.23□□□□□ -1.73
USP54-216ENST00000498143 GPR35Q9HC97 309 aa4.23□□□□□ -1.73
USP54-216ENST00000498143 SIPA1L1O43166 1804 aa4.23□□□□□ -1.73
USP54-216ENST00000498143 BRCA2P51587 3418 aa4.23□□□□□ -1.73
USP54-216ENST00000498143 TRAV27A0A087WT01 109 aa4.23□□□□□ -1.73
USP54-216ENST00000498143 TRAV40A0A0B4J280 105 aa4.23□□□□□ -1.73
USP54-216ENST00000498143 FOXI3A8MTJ6 420 aaPredicted RBP4.23□□□□□ -1.73
USP54-216ENST00000498143 EDIL3O43854 480 aa4.23□□□□□ -1.73
USP54-216ENST00000498143 ZNF688P0C7X2 276 aa4.23□□□□□ -1.73
USP54-216ENST00000498143 PSG2P11465 335 aa4.23□□□□□ -1.73
USP54-216ENST00000498143 PI3P19957 117 aa4.23□□□□□ -1.73
USP54-216ENST00000498143 EMDP50402 254 aa4.23□□□□□ -1.73
USP54-216ENST00000498143 RPL8P62917 257 aaKnown RBP4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms