RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 IGKV3-20P01619 116 aa4.87□□□□□ -1.63
USF3-204ENST00000496826 PYYP10082 97 aa4.87□□□□□ -1.63
USF3-204ENST00000496826 COL3A1P02461 1466 aaPredicted RBP4.87□□□□□ -1.63
USF3-204ENST00000496826 IGHV3-43A0A0B4J1X8 118 aa4.87□□□□□ -1.63
USF3-204ENST00000496826 IGHV3-43DP0DP04 118 aa4.87□□□□□ -1.63
USF3-204ENST00000496826 A0A1W2PQF6 199 aa4.87□□□□□ -1.63
USF3-204ENST00000496826 PRSS29PA6NIE9 313 aa4.87□□□□□ -1.63
USF3-204ENST00000496826 ZNF876PQ49A33 203 aa4.87□□□□□ -1.63
USF3-204ENST00000496826 LILRA6Q6PI73 481 aa4.87□□□□□ -1.63
USF3-204ENST00000496826 GCHFRP30047 84 aa4.87□□□□□ -1.63
USF3-204ENST00000496826 CDKN1BP46527 198 aa4.87□□□□□ -1.63
USF3-204ENST00000496826 ZNF576Q9H609 170 aa4.87□□□□□ -1.63
USF3-204ENST00000496826 TRAV12-1A0A0B4J245 112 aa4.86□□□□□ -1.63
USF3-204ENST00000496826 MSGN1A6NI15 193 aa4.86□□□□□ -1.63
USF3-204ENST00000496826 K7ENP7 123 aa4.86□□□□□ -1.63
USF3-204ENST00000496826 EFEMP2O95967 443 aa4.86□□□□□ -1.63
USF3-204ENST00000496826 LOXL1Q08397 574 aaPredicted RBP4.86□□□□□ -1.63
USF3-204ENST00000496826 Q8N1Y9 231 aa4.86□□□□□ -1.63
USF3-204ENST00000496826 INSM2Q96T92 566 aaPredicted RBP4.86□□□□□ -1.63
USF3-204ENST00000496826 C7orf69Q9H7B7 122 aa4.86□□□□□ -1.63
USF3-204ENST00000496826 I3L3M4 83 aa4.86□□□□□ -1.63
USF3-204ENST00000496826 DLEU1O43261 78 aa4.86□□□□□ -1.63
USF3-204ENST00000496826 PPIFP30405 207 aaKnown RBP4.86□□□□□ -1.63
USF3-204ENST00000496826 LTBRP36941 435 aa4.86□□□□□ -1.63
USF3-204ENST00000496826 SP6Q3SY56 376 aa4.86□□□□□ -1.63
USF3-204ENST00000496826 FAAP20Q6NZ36 180 aa4.86□□□□□ -1.63
USF3-204ENST00000496826 PPRC1Q5VV67 1664 aaKnown RBP4.86□□□□□ -1.63
USF3-204ENST00000496826 LYZL2Q7Z4W2 148 aa4.86□□□□□ -1.63
USF3-204ENST00000496826 CLTCL1P53675 1640 aa4.86□□□□□ -1.63
USF3-204ENST00000496826 LINC01553A4QN01 128 aa4.86□□□□□ -1.63
USF3-204ENST00000496826 METTL12A8MUP2 240 aa4.86□□□□□ -1.63
USF3-204ENST00000496826 LINC00303Q3SY05 128 aa4.86□□□□□ -1.63
USF3-204ENST00000496826 ZC3H13Q5T200 1668 aaKnown RBP4.86□□□□□ -1.63
USF3-204ENST00000496826 LY6EQ16553 131 aa4.86□□□□□ -1.63
USF3-204ENST00000496826 C4orf3Q8WVX3 66 aa4.86□□□□□ -1.63
USF3-204ENST00000496826 CFHR4Q92496 578 aa4.86□□□□□ -1.63
USF3-204ENST00000496826 PILRBQ9UKJ0 227 aa4.86□□□□□ -1.63
USF3-204ENST00000496826 BUB3O43684 328 aa4.86□□□□□ -1.63
USF3-204ENST00000496826 TNFRSF1BP20333 461 aa4.86□□□□□ -1.63
USF3-204ENST00000496826 LMO3Q8TAP4 145 aa4.86□□□□□ -1.63
USF3-204ENST00000496826 AJUBAQ96IF1 538 aa4.86□□□□□ -1.63
USF3-204ENST00000496826 TMEFF2Q9UIK5 374 aaPredicted RBP4.86□□□□□ -1.63
USF3-204ENST00000496826 USP32Q8NFA0 1604 aa4.86□□□□□ -1.63
USF3-204ENST00000496826 TIMM17AQ99595 171 aa4.85□□□□□ -1.63
USF3-204ENST00000496826 A8MWP6 167 aa4.85□□□□□ -1.63
USF3-204ENST00000496826 HMGN4O00479 90 aa4.85□□□□□ -1.63
USF3-204ENST00000496826 NBR2O15453 112 aa4.85□□□□□ -1.63
USF3-204ENST00000496826 TMEM242Q9NWH2 141 aa4.85□□□□□ -1.63
USF3-204ENST00000496826 TRBV10-2A0A0K0K1G8 114 aa4.85□□□□□ -1.63
USF3-204ENST00000496826 FOXF1Q12946 379 aa4.85□□□□□ -1.63
USF3-204ENST00000496826 ZC2HC1AQ96GY0 325 aa4.85□□□□□ -1.63
USF3-204ENST00000496826 EAF1Q96JC9 268 aaPredicted RBP4.85□□□□□ -1.63
USF3-204ENST00000496826 SLIT2O94813 1529 aa4.85□□□□□ -1.63
USF3-204ENST00000496826 MRPS36P82909 103 aaKnown RBP4.85□□□□□ -1.63
USF3-204ENST00000496826 MADDQ8WXG6 1647 aa4.85□□□□□ -1.63
USF3-204ENST00000496826 H0YIZ8 118 aa4.85□□□□□ -1.63
USF3-204ENST00000496826 PSG3Q16557 428 aa4.85□□□□□ -1.63
USF3-204ENST00000496826 HIGD1CA8MV81 97 aa4.85□□□□□ -1.63
USF3-204ENST00000496826 NDUFS6O75380 124 aaKnown RBP4.85□□□□□ -1.63
USF3-204ENST00000496826 C5orf64Q2M2E5 130 aa4.85□□□□□ -1.63
USF3-204ENST00000496826 SPINK9Q5DT21 86 aa4.85□□□□□ -1.63
USF3-204ENST00000496826 RNASE2P10153 161 aaKnown RBP4.85□□□□□ -1.63
USF3-204ENST00000496826 GATA1P15976 413 aaPredicted RBP4.85□□□□□ -1.63
USF3-204ENST00000496826 RHOHQ15669 191 aa4.85□□□□□ -1.63
USF3-204ENST00000496826 GATA4P43694 442 aa4.84□□□□□ -1.63
USF3-204ENST00000496826 ZNF138P52744 262 aa4.84□□□□□ -1.63
USF3-204ENST00000496826 HCP5Q6MZN7 132 aa4.84□□□□□ -1.63
USF3-204ENST00000496826 DEFB123Q8N688 67 aa4.84□□□□□ -1.63
USF3-204ENST00000496826 AGLP35573 1532 aa4.84□□□□□ -1.63
USF3-204ENST00000496826 UPK3AO75631 287 aa4.84□□□□□ -1.63
USF3-204ENST00000496826 FAM189BP81408 668 aa4.84□□□□□ -1.63
USF3-204ENST00000496826 PYY3Q5JQD4 70 aa4.84□□□□□ -1.63
USF3-204ENST00000496826 GAFA1Q96PS6 74 aa4.84□□□□□ -1.63
USF3-204ENST00000496826 M0QZQ0 153 aa4.84□□□□□ -1.63
USF3-204ENST00000496826 NGFRP08138 427 aa4.84□□□□□ -1.63
USF3-204ENST00000496826 GZMMP51124 257 aa4.84□□□□□ -1.63
USF3-204ENST00000496826 NFE4Q86UQ8 179 aa4.84□□□□□ -1.63
USF3-204ENST00000496826 NPDC1Q9NQX5 325 aaPredicted RBP4.84□□□□□ -1.63
USF3-204ENST00000496826 CRYBA4P53673 196 aa4.84□□□□□ -1.63
USF3-204ENST00000496826 KLF16Q9BXK1 252 aaPredicted RBP4.84□□□□□ -1.63
USF3-204ENST00000496826 CCL28Q9NRJ3 127 aa4.84□□□□□ -1.63
USF3-204ENST00000496826 FAM216BQ8N7L0 139 aa4.84□□□□□ -1.63
USF3-204ENST00000496826 CCL4L1Q8NHW4 92 aa4.84□□□□□ -1.63
USF3-204ENST00000496826 FAM60AQ9NP50 221 aa4.84□□□□□ -1.63
USF3-204ENST00000496826 PRDM6Q9NQX0 595 aa4.84□□□□□ -1.63
USF3-204ENST00000496826 Q0VG73 95 aa4.84□□□□□ -1.64
USF3-204ENST00000496826 PCP2Q8IVA1 136 aa4.84□□□□□ -1.64
USF3-204ENST00000496826 NDUFA4L2Q9NRX3 87 aa4.84□□□□□ -1.64
USF3-204ENST00000496826 AURKAIP1Q9NWT8 199 aaPredicted RBP4.84□□□□□ -1.64
USF3-204ENST00000496826 PRO1854Q9UHT4 67 aa4.84□□□□□ -1.64
USF3-204ENST00000496826 TCF19Q9Y242 345 aa4.84□□□□□ -1.64
USF3-204ENST00000496826 CCL25O15444 150 aa4.84□□□□□ -1.64
USF3-204ENST00000496826 C1QAP02745 245 aa4.84□□□□□ -1.64
USF3-204ENST00000496826 PSG4Q00888 419 aa4.84□□□□□ -1.64
USF3-204ENST00000496826 LIME1Q9H400 295 aa4.84□□□□□ -1.64
USF3-204ENST00000496826 MYOM1P52179 1685 aa4.83□□□□□ -1.64
USF3-204ENST00000496826 CCL20P78556 96 aa4.83□□□□□ -1.64
USF3-204ENST00000496826 CD300LDQ6UXZ3 194 aa4.83□□□□□ -1.64
USF3-204ENST00000496826 DMRTC2Q8IXT2 367 aaPredicted RBP4.83□□□□□ -1.64
USF3-204ENST00000496826 Q8NFD4 153 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms