RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 NRN1Q9NPD7 142 aa9.07□□□□□ -0.96
SKA1-205ENST00000494518 ABCA13Q86UQ4 5058 aa9.07□□□□□ -0.96
SKA1-205ENST00000494518 RD3LP0DJH9 198 aa9.06□□□□□ -0.96
SKA1-205ENST00000494518 PSG1P11464 419 aa9.06□□□□□ -0.96
SKA1-205ENST00000494518 ZNF182P17025 639 aaPredicted RBP9.06□□□□□ -0.96
SKA1-205ENST00000494518 AP2S1P53680 142 aaPredicted RBP9.06□□□□□ -0.96
SKA1-205ENST00000494518 AARDQ4LEZ3 155 aa9.06□□□□□ -0.96
SKA1-205ENST00000494518 LINC00336Q6ZUF6 198 aa9.06□□□□□ -0.96
SKA1-205ENST00000494518 FAM219AQ8IW50 185 aa9.06□□□□□ -0.96
SKA1-205ENST00000494518 POM121L12Q8N7R1 296 aa9.06□□□□□ -0.96
SKA1-205ENST00000494518 RNASEH2CQ8TDP1 164 aaKnown RBP9.06□□□□□ -0.96
SKA1-205ENST00000494518 AP3S1Q92572 193 aa9.06□□□□□ -0.96
SKA1-205ENST00000494518 LINC00052Q96N35 136 aa9.06□□□□□ -0.96
SKA1-205ENST00000494518 NDUFAF3Q9BU61 184 aa9.06□□□□□ -0.96
SKA1-205ENST00000494518 C1QTNF4Q9BXJ3 329 aa9.06□□□□□ -0.96
SKA1-205ENST00000494518 MIXL1Q9H2W2 232 aa9.06□□□□□ -0.96
SKA1-205ENST00000494518 IGLV2-18A0A075B6J9 118 aa9.05□□□□□ -0.96
SKA1-205ENST00000494518 PRSS29PA6NIE9 313 aa9.05□□□□□ -0.96
SKA1-205ENST00000494518 RTL8CO15255 209 aa9.05□□□□□ -0.96
SKA1-205ENST00000494518 BUB3O43684 328 aa9.05□□□□□ -0.96
SKA1-205ENST00000494518 TOMM40O96008 361 aa9.05□□□□□ -0.96
SKA1-205ENST00000494518 P0DMU3 169 aa9.05□□□□□ -0.96
SKA1-205ENST00000494518 FAM231AP0DMU4 169 aa9.05□□□□□ -0.96
SKA1-205ENST00000494518 FAM231CP0DMU5 169 aa9.05□□□□□ -0.96
SKA1-205ENST00000494518 HLA-DRB4P13762 266 aa9.05□□□□□ -0.96
SKA1-205ENST00000494518 NUTF2P61970 127 aaKnown RBP9.05□□□□□ -0.96
SKA1-205ENST00000494518 CTF1Q16619 201 aa9.05□□□□□ -0.96
SKA1-205ENST00000494518 GPR107Q5VW38 600 aa9.05□□□□□ -0.96
SKA1-205ENST00000494518 WDR12Q9GZL7 423 aaKnown RBP9.05□□□□□ -0.96
SKA1-205ENST00000494518 HLA-DRB4X5D2U9 266 aa9.05□□□□□ -0.96
SKA1-205ENST00000494518 CRYM-AS1A6NIL9 109 aa9.04□□□□□ -0.96
SKA1-205ENST00000494518 DISC1C4P0D8 188 aa9.04□□□□□ -0.96
SKA1-205ENST00000494518 GABARAPH6UMI1 98 aa9.04□□□□□ -0.96
SKA1-205ENST00000494518 RGS5O15539 181 aa9.04□□□□□ -0.96
SKA1-205ENST00000494518 GSTZ1O43708 216 aaPredicted RBP9.04□□□□□ -0.96
SKA1-205ENST00000494518 B3GALNT1O75752 331 aa9.04□□□□□ -0.96
SKA1-205ENST00000494518 GABARAPO95166 117 aa9.04□□□□□ -0.96
SKA1-205ENST00000494518 IFNA10P01566 189 aa9.04□□□□□ -0.96
SKA1-205ENST00000494518 SULT1A3P0DMM9 295 aa9.04□□□□□ -0.96
SKA1-205ENST00000494518 SULT1A4P0DMN0 295 aa9.04□□□□□ -0.96
SKA1-205ENST00000494518 HTN3P15516 51 aa9.04□□□□□ -0.96
SKA1-205ENST00000494518 NMSQ5H8A3 153 aa9.04□□□□□ -0.96
SKA1-205ENST00000494518 ETFRF1Q6IPR1 90 aa9.04□□□□□ -0.96
SKA1-205ENST00000494518 UBE2DNLQ8IWF7 75 aa9.04□□□□□ -0.96
SKA1-205ENST00000494518 OR4C16Q8NGL9 310 aa9.04□□□□□ -0.96
SKA1-205ENST00000494518 RNF125Q96EQ8 232 aa9.04□□□□□ -0.96
SKA1-205ENST00000494518 F6UB75 175 aa9.03□□□□□ -0.96
SKA1-205ENST00000494518 CTDSP2O14595 271 aa9.03□□□□□ -0.96
SKA1-205ENST00000494518 SMIM18P0DKX4 95 aa9.03□□□□□ -0.96
SKA1-205ENST00000494518 ZNF90Q03938 601 aa9.03□□□□□ -0.96
SKA1-205ENST00000494518 ZNF705AQ6ZN79 300 aaPredicted RBP9.03□□□□□ -0.96
SKA1-205ENST00000494518 OR4B1Q8NGF8 309 aa9.03□□□□□ -0.96
SKA1-205ENST00000494518 RBKSQ9H477 322 aa9.03□□□□□ -0.96
SKA1-205ENST00000494518 GPR132Q9UNW8 380 aa9.03□□□□□ -0.96
SKA1-205ENST00000494518 ZFP92A6NM28 416 aa9.02□□□□□ -0.97
SKA1-205ENST00000494518 SPART-AS1P0CW21 52 aa9.02□□□□□ -0.97
SKA1-205ENST00000494518 AKAIN1P0CW23 69 aa9.02□□□□□ -0.97
SKA1-205ENST00000494518 NKX2-1P43699 371 aaPredicted RBP9.02□□□□□ -0.97
SKA1-205ENST00000494518 LYZP61626 148 aa9.02□□□□□ -0.97
SKA1-205ENST00000494518 OR2F1Q13607 317 aa9.02□□□□□ -0.97
SKA1-205ENST00000494518 LGI3Q8N145 548 aa9.02□□□□□ -0.97
SKA1-205ENST00000494518 OR51S1Q8NGJ8 323 aa9.02□□□□□ -0.97
SKA1-205ENST00000494518 COQ8AQ8NI60 647 aa9.02□□□□□ -0.97
SKA1-205ENST00000494518 DTD1Q8TEA8 209 aa9.02□□□□□ -0.97
SKA1-205ENST00000494518 SLC35B3Q9H1N7 401 aa9.02□□□□□ -0.97
SKA1-205ENST00000494518 SAV1Q9H4B6 383 aaPredicted RBP9.02□□□□□ -0.97
SKA1-205ENST00000494518 TMEM56-RWDD3S4R434 201 aa9.02□□□□□ -0.97
SKA1-205ENST00000494518 IGKV1D-37A0A075B6S9 117 aa9.01□□□□□ -0.97
SKA1-205ENST00000494518 ZNF705FA8MVS1 300 aaPredicted RBP9.01□□□□□ -0.97
SKA1-205ENST00000494518 ZNF705DP0CH99 300 aaPredicted RBP9.01□□□□□ -0.97
SKA1-205ENST00000494518 ZNF705BP0CI00 300 aaPredicted RBP9.01□□□□□ -0.97
SKA1-205ENST00000494518 KLF9Q13886 244 aaPredicted RBP9.01□□□□□ -0.97
SKA1-205ENST00000494518 IL18Q14116 193 aa9.01□□□□□ -0.97
SKA1-205ENST00000494518 SURF2Q15527 256 aaPredicted RBP9.01□□□□□ -0.97
SKA1-205ENST00000494518 FAM222AQ5U5X8 452 aa9.01□□□□□ -0.97
SKA1-205ENST00000494518 LYZL2Q7Z4W2 148 aa9.01□□□□□ -0.97
SKA1-205ENST00000494518 NOXA1Q86UR1 476 aa9.01□□□□□ -0.97
SKA1-205ENST00000494518 CLVS1Q8IUQ0 354 aaPredicted RBP9.01□□□□□ -0.97
SKA1-205ENST00000494518 ZNF709Q8N972 641 aa9.01□□□□□ -0.97
SKA1-205ENST00000494518 C15orf40Q8WUR7 153 aa9.01□□□□□ -0.97
SKA1-205ENST00000494518 SMIM4Q8WVI0 70 aa9.01□□□□□ -0.97
SKA1-205ENST00000494518 PPP1R14BQ96C90 147 aa9.01□□□□□ -0.97
SKA1-205ENST00000494518 SEPSECSQ9HD40 501 aaKnown RBP9.01□□□□□ -0.97
SKA1-205ENST00000494518 RFNGQ9Y644 331 aa9.01□□□□□ -0.97
SKA1-205ENST00000494518 HSPG2P98160 4391 aa9.01□□□□□ -0.97
SKA1-205ENST00000494518 IFNA21P01568 189 aa9□□□□□ -0.97
SKA1-205ENST00000494518 AKR1C4P17516 323 aa9□□□□□ -0.97
SKA1-205ENST00000494518 ID1P41134 155 aa9□□□□□ -0.97
SKA1-205ENST00000494518 SSBP1Q04837 148 aaKnown RBP9□□□□□ -0.97
SKA1-205ENST00000494518 GAMTQ14353 236 aa9□□□□□ -0.97
SKA1-205ENST00000494518 SMCO1Q147U7 214 aa9□□□□□ -0.97
SKA1-205ENST00000494518 SPCS2Q15005 226 aa9□□□□□ -0.97
SKA1-205ENST00000494518 FOXI2Q6ZQN5 318 aa9□□□□□ -0.97
SKA1-205ENST00000494518 SLC35E1Q96K37 410 aa9□□□□□ -0.97
SKA1-205ENST00000494518 NEU1Q99519 415 aa9□□□□□ -0.97
SKA1-205ENST00000494518 C7orf50Q9BRJ6 194 aaKnown RBP9□□□□□ -0.97
SKA1-205ENST00000494518 NIPSNAP3BQ9BS92 247 aa9□□□□□ -0.97
SKA1-205ENST00000494518 DKK2Q9UBU2 259 aa9□□□□□ -0.97
SKA1-205ENST00000494518 HSPB7Q9UBY9 170 aa9□□□□□ -0.97
SKA1-205ENST00000494518 PAIP2BQ9ULR5 123 aaKnown RBP9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms