RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 CX3CL1P78423 397 aa13.42□□□□□ -0.26
CCDC88B-209ENST00000494080 MEF2CQ06413 473 aaPredicted RBP13.42□□□□□ -0.26
CCDC88B-209ENST00000494080 TMEM144Q7Z5S9 345 aa13.42□□□□□ -0.26
CCDC88B-209ENST00000494080 A0A1W2PS18 150 aa13.42□□□□□ -0.26
CCDC88B-209ENST00000494080 PSMB2P49721 201 aa13.42□□□□□ -0.26
CCDC88B-209ENST00000494080 GNG5P63218 68 aa13.42□□□□□ -0.26
CCDC88B-209ENST00000494080 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.42□□□□□ -0.26
CCDC88B-209ENST00000494080 MBD3L4A6NDZ8 208 aaPredicted RBP13.42□□□□□ -0.26
CCDC88B-209ENST00000494080 MBD3L3A6NE82 208 aaPredicted RBP13.42□□□□□ -0.26
CCDC88B-209ENST00000494080 MBD3L5A6NJ08 208 aaPredicted RBP13.42□□□□□ -0.26
CCDC88B-209ENST00000494080 C9JCJ5 164 aa13.42□□□□□ -0.26
CCDC88B-209ENST00000494080 FOXH1O75593 365 aa13.42□□□□□ -0.26
CCDC88B-209ENST00000494080 TDGF1P13385 188 aa13.42□□□□□ -0.26
CCDC88B-209ENST00000494080 HIST1H1AQ02539 215 aaPredicted RBP13.42□□□□□ -0.26
CCDC88B-209ENST00000494080 MBNL2Q5VZF2 373 aaKnown RBP13.42□□□□□ -0.26
CCDC88B-209ENST00000494080 MBD3L2Q8NHZ7 208 aaPredicted RBP13.42□□□□□ -0.26
CCDC88B-209ENST00000494080 COQ2Q96H96 371 aa13.42□□□□□ -0.26
CCDC88B-209ENST00000494080 CST9LQ9H4G1 147 aa13.42□□□□□ -0.26
CCDC88B-209ENST00000494080 A0A087X0K7 114 aa13.42□□□□□ -0.26
CCDC88B-209ENST00000494080 PYYP10082 97 aa13.42□□□□□ -0.26
CCDC88B-209ENST00000494080 CD24P25063 80 aa13.42□□□□□ -0.26
CCDC88B-209ENST00000494080 ZNF585BQ52M93 769 aa13.42□□□□□ -0.26
CCDC88B-209ENST00000494080 OCIAD2Q56VL3 154 aa13.42□□□□□ -0.26
CCDC88B-209ENST00000494080 WFDC3Q8IUB2 231 aa13.42□□□□□ -0.26
CCDC88B-209ENST00000494080 ZNF114Q8NC26 417 aa13.42□□□□□ -0.26
CCDC88B-209ENST00000494080 GAGE12BA1L429 117 aa13.41□□□□□ -0.26
CCDC88B-209ENST00000494080 LYPD6Q86Y78 171 aa13.41□□□□□ -0.26
CCDC88B-209ENST00000494080 MUC21A0A0G2JKD1 596 aa13.41□□□□□ -0.26
CCDC88B-209ENST00000494080 MUC21A0A140T8X8 626 aa13.41□□□□□ -0.26
CCDC88B-209ENST00000494080 A0A1W2PRE2 83 aa13.41□□□□□ -0.26
CCDC88B-209ENST00000494080 IGKV3-15P01624 115 aa13.41□□□□□ -0.26
CCDC88B-209ENST00000494080 ATP5J2P56134 94 aa13.41□□□□□ -0.26
CCDC88B-209ENST00000494080 Q0VG73 95 aa13.41□□□□□ -0.26
CCDC88B-209ENST00000494080 MUC21Q5SSG8 566 aa13.41□□□□□ -0.26
CCDC88B-209ENST00000494080 TSKUQ8WUA8 353 aa13.41□□□□□ -0.26
CCDC88B-209ENST00000494080 MGST2Q99735 147 aa13.41□□□□□ -0.26
CCDC88B-209ENST00000494080 PIEZO1Q92508 2521 aa13.41□□□□□ -0.26
CCDC88B-209ENST00000494080 KIR2DL5BA0A0G2JN68 375 aa13.41□□□□□ -0.26
CCDC88B-209ENST00000494080 KIR2DL5BA0A0G2JPC4 375 aa13.41□□□□□ -0.26
CCDC88B-209ENST00000494080 PRSS8Q16651 343 aa13.41□□□□□ -0.26
CCDC88B-209ENST00000494080 KIR2DL5AQ8N109 375 aa13.41□□□□□ -0.26
CCDC88B-209ENST00000494080 A0A0G2JNJ9 132 aa13.4□□□□□ -0.26
CCDC88B-209ENST00000494080 A0A1B0GUT8 65 aa13.4□□□□□ -0.26
CCDC88B-209ENST00000494080 DTX1Q86Y01 620 aa13.4□□□□□ -0.26
CCDC88B-209ENST00000494080 GPR82Q96P67 336 aa13.4□□□□□ -0.26
CCDC88B-209ENST00000494080 DPM3Q9P2X0 92 aa13.4□□□□□ -0.26
CCDC88B-209ENST00000494080 Q9UFV3 132 aa13.4□□□□□ -0.26
CCDC88B-209ENST00000494080 MRPS16Q9Y3D3 137 aaKnown RBP13.4□□□□□ -0.26
CCDC88B-209ENST00000494080 ARFGEF3Q5TH69 2177 aa13.4□□□□□ -0.26
CCDC88B-209ENST00000494080 RBPMS2Q6ZRY4 209 aaKnown RBP13.4□□□□□ -0.26
CCDC88B-209ENST00000494080 VKORC1Q9BQB6 163 aa13.4□□□□□ -0.26
CCDC88B-209ENST00000494080 MCRIP2Q9BUT9 160 aaKnown RBP13.4□□□□□ -0.26
CCDC88B-209ENST00000494080 TDRG1Q3Y452 100 aa13.4□□□□□ -0.26
CCDC88B-209ENST00000494080 Q6ZS49 121 aa13.4□□□□□ -0.26
CCDC88B-209ENST00000494080 TRAV8-6A0A0B4J262 113 aa13.39□□□□□ -0.27
CCDC88B-209ENST00000494080 ANOS1P23352 680 aa13.39□□□□□ -0.27
CCDC88B-209ENST00000494080 C5orf30Q96GV9 206 aa13.39□□□□□ -0.27
CCDC88B-209ENST00000494080 ZNF106Q9H2Y7 1883 aaKnown RBP13.39□□□□□ -0.27
CCDC88B-209ENST00000494080 DKK1O94907 266 aa13.39□□□□□ -0.27
CCDC88B-209ENST00000494080 IGHV3OR16-13A0A075B7E8 117 aa13.39□□□□□ -0.27
CCDC88B-209ENST00000494080 IGHV3-74A0A0B4J1X5 117 aa13.39□□□□□ -0.27
CCDC88B-209ENST00000494080 YPEL3P61236 119 aaPredicted RBP13.39□□□□□ -0.27
CCDC88B-209ENST00000494080 LY6EQ16553 131 aa13.39□□□□□ -0.27
CCDC88B-209ENST00000494080 TEX43Q6ZNM6 134 aa13.39□□□□□ -0.27
CCDC88B-209ENST00000494080 ARHGAP21Q5T5U3 1957 aa13.39□□□□□ -0.27
CCDC88B-209ENST00000494080 NCOR2Q9Y618 2525 aa13.39□□□□□ -0.27
CCDC88B-209ENST00000494080 C15orf62A8K5M9 175 aa13.39□□□□□ -0.27
CCDC88B-209ENST00000494080 HAPLN4Q86UW8 402 aa13.39□□□□□ -0.27
CCDC88B-209ENST00000494080 PF4V1P10720 104 aa13.38□□□□□ -0.27
CCDC88B-209ENST00000494080 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.38□□□□□ -0.27
CCDC88B-209ENST00000494080 IGKV1D-17A0A075B6S4 117 aa13.38□□□□□ -0.27
CCDC88B-209ENST00000494080 LINC00473A8K010 186 aa13.38□□□□□ -0.27
CCDC88B-209ENST00000494080 PYGO2Q9BRQ0 406 aa13.38□□□□□ -0.27
CCDC88B-209ENST00000494080 IGF2RP11717 2491 aa13.38□□□□□ -0.27
CCDC88B-209ENST00000494080 IGHV3OR16-8A0A075B7F1 116 aa13.38□□□□□ -0.27
CCDC88B-209ENST00000494080 C15orf61A6NNL5 157 aa13.38□□□□□ -0.27
CCDC88B-209ENST00000494080 UPK2O00526 184 aa13.38□□□□□ -0.27
CCDC88B-209ENST00000494080 NUPR1O60356 82 aa13.38□□□□□ -0.27
CCDC88B-209ENST00000494080 C10orf55Q5SWW7 151 aa13.38□□□□□ -0.27
CCDC88B-209ENST00000494080 FAM53AQ6NSI3 398 aaPredicted RBP13.38□□□□□ -0.27
CCDC88B-209ENST00000494080 RABAC1Q9UI14 185 aa13.38□□□□□ -0.27
CCDC88B-209ENST00000494080 RPUSD1Q9UJJ7 312 aaKnown RBP13.38□□□□□ -0.27
CCDC88B-209ENST00000494080 ZNF257Q9Y2Q1 563 aa13.38□□□□□ -0.27
CCDC88B-209ENST00000494080 TRAV5A0A0B4J249 113 aa13.37□□□□□ -0.27
CCDC88B-209ENST00000494080 CGB1A6NKQ9 187 aa13.37□□□□□ -0.27
CCDC88B-209ENST00000494080 IL4P05112 153 aa13.37□□□□□ -0.27
CCDC88B-209ENST00000494080 MFAP4P55083 255 aa13.37□□□□□ -0.27
CCDC88B-209ENST00000494080 PRR30Q53SZ7 412 aaPredicted RBP13.37□□□□□ -0.27
CCDC88B-209ENST00000494080 ZNF502Q8TBZ5 544 aa13.37□□□□□ -0.27
CCDC88B-209ENST00000494080 MAP1LC3AQ9H492 121 aa13.37□□□□□ -0.27
CCDC88B-209ENST00000494080 IGKV1-39P01597 117 aa13.37□□□□□ -0.27
CCDC88B-209ENST00000494080 IGKV1D-39P04432 117 aa13.37□□□□□ -0.27
CCDC88B-209ENST00000494080 PRELID3AQ96N28 172 aa13.37□□□□□ -0.27
CCDC88B-209ENST00000494080 OR52E5Q8NH55 327 aa13.37□□□□□ -0.27
CCDC88B-209ENST00000494080 GTSF1LQ9H1H1 148 aa13.37□□□□□ -0.27
CCDC88B-209ENST00000494080 A0A1B0GWB2 263 aa13.37□□□□□ -0.27
CCDC88B-209ENST00000494080 RPL13AP40429 203 aaKnown RBP13.37□□□□□ -0.27
CCDC88B-209ENST00000494080 SEC11AP67812 179 aa13.37□□□□□ -0.27
CCDC88B-209ENST00000494080 OR10W1Q8NGF6 305 aa13.37□□□□□ -0.27
CCDC88B-209ENST00000494080 SOX21Q9Y651 276 aaPredicted RBP13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms