RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 SPART-AS1P0CW21 52 aa8.39□□□□□ -1.07
COL6A3-213ENST00000493475 AKAIN1P0CW23 69 aa8.39□□□□□ -1.07
COL6A3-213ENST00000493475 RBMY1A1P0DJD3 496 aaKnown RBP8.39□□□□□ -1.07
COL6A3-213ENST00000493475 RBMY1CP0DJD4 496 aa8.39□□□□□ -1.07
COL6A3-213ENST00000493475 C4BPBP20851 252 aa8.39□□□□□ -1.07
COL6A3-213ENST00000493475 NKX2-1P43699 371 aaPredicted RBP8.39□□□□□ -1.07
COL6A3-213ENST00000493475 RBMY1FQ15415 496 aaKnown RBP8.39□□□□□ -1.07
COL6A3-213ENST00000493475 SPATA31B1PQ5VZV4 182 aa8.39□□□□□ -1.07
COL6A3-213ENST00000493475 OR8G2PQ6IF36 304 aa8.39□□□□□ -1.07
COL6A3-213ENST00000493475 OR51G1Q8NGK1 321 aa8.39□□□□□ -1.07
COL6A3-213ENST00000493475 GLMPQ8WWB7 406 aa8.39□□□□□ -1.07
COL6A3-213ENST00000493475 PPP1R14BQ96C90 147 aa8.39□□□□□ -1.07
COL6A3-213ENST00000493475 SLC35E1Q96K37 410 aa8.39□□□□□ -1.07
COL6A3-213ENST00000493475 FAM210BQ96KR6 192 aa8.39□□□□□ -1.07
COL6A3-213ENST00000493475 CLEC5AQ9NY25 188 aa8.39□□□□□ -1.07
COL6A3-213ENST00000493475 ZFP92A6NM28 416 aa8.38□□□□□ -1.07
COL6A3-213ENST00000493475 CCR6P51684 374 aa8.38□□□□□ -1.07
COL6A3-213ENST00000493475 KLF9Q13886 244 aaPredicted RBP8.38□□□□□ -1.07
COL6A3-213ENST00000493475 SOHLH1Q5JUK2 328 aa8.38□□□□□ -1.07
COL6A3-213ENST00000493475 UBE2DNLQ8IWF7 75 aa8.38□□□□□ -1.07
COL6A3-213ENST00000493475 GLYATL2Q8WU03 294 aa8.38□□□□□ -1.07
COL6A3-213ENST00000493475 NPIPB3Q92617 1050 aa8.38□□□□□ -1.07
COL6A3-213ENST00000493475 PBDC1Q9BVG4 233 aa8.38□□□□□ -1.07
COL6A3-213ENST00000493475 U3KQE9 123 aa8.38□□□□□ -1.07
COL6A3-213ENST00000493475 X6R8D5 127 aa8.38□□□□□ -1.07
COL6A3-213ENST00000493475 A0A0G2JRQ6 117 aa8.37□□□□□ -1.07
COL6A3-213ENST00000493475 CRYM-AS1A6NIL9 109 aa8.37□□□□□ -1.07
COL6A3-213ENST00000493475 BUB3O43684 328 aa8.37□□□□□ -1.07
COL6A3-213ENST00000493475 CFDP00746 253 aaPredicted RBP8.37□□□□□ -1.07
COL6A3-213ENST00000493475 HLA-DRB4P13762 266 aa8.37□□□□□ -1.07
COL6A3-213ENST00000493475 AKR1C4P17516 323 aa8.37□□□□□ -1.07
COL6A3-213ENST00000493475 RPP30P78346 268 aaKnown RBP8.37□□□□□ -1.07
COL6A3-213ENST00000493475 IL18Q14116 193 aa8.37□□□□□ -1.07
COL6A3-213ENST00000493475 MLANAQ16655 118 aa8.37□□□□□ -1.07
COL6A3-213ENST00000493475 C1orf194Q5T5A4 169 aa8.37□□□□□ -1.07
COL6A3-213ENST00000493475 EBLN2Q6P2I7 272 aa8.37□□□□□ -1.07
COL6A3-213ENST00000493475 SELENOHQ8IZQ5 122 aaKnown RBP8.37□□□□□ -1.07
COL6A3-213ENST00000493475 LGI3Q8N145 548 aa8.37□□□□□ -1.07
COL6A3-213ENST00000493475 POM121L12Q8N7R1 296 aa8.37□□□□□ -1.07
COL6A3-213ENST00000493475 OR4D10Q8NGI6 311 aa8.37□□□□□ -1.07
COL6A3-213ENST00000493475 SMIM4Q8WVI0 70 aa8.37□□□□□ -1.07
COL6A3-213ENST00000493475 RNF125Q96EQ8 232 aa8.37□□□□□ -1.07
COL6A3-213ENST00000493475 NEU1Q99519 415 aa8.37□□□□□ -1.07
COL6A3-213ENST00000493475 MRPL36Q9P0J6 103 aaKnown RBP8.37□□□□□ -1.07
COL6A3-213ENST00000493475 XCL2Q9UBD3 114 aa8.37□□□□□ -1.07
COL6A3-213ENST00000493475 GOLT1BQ9Y3E0 138 aa8.37□□□□□ -1.07
COL6A3-213ENST00000493475 RFNGQ9Y644 331 aa8.37□□□□□ -1.07
COL6A3-213ENST00000493475 TMEM56-RWDD3S4R434 201 aa8.37□□□□□ -1.07
COL6A3-213ENST00000493475 HLA-DRB4X5D2U9 266 aa8.37□□□□□ -1.07
COL6A3-213ENST00000493475 FRAS1Q86XX4 4008 aa8.37□□□□□ -1.07
COL6A3-213ENST00000493475 ELOA3CA0A087WX78 387 aaPredicted RBP8.36□□□□□ -1.07
COL6A3-213ENST00000493475 SNRPGP15A8MWD9 76 aa8.36□□□□□ -1.07
COL6A3-213ENST00000493475 H3BMM0 161 aa8.36□□□□□ -1.07
COL6A3-213ENST00000493475 NOL3O60936 208 aaKnown RBP8.36□□□□□ -1.07
COL6A3-213ENST00000493475 GIG44P09565 113 aaPredicted RBP8.36□□□□□ -1.07
COL6A3-213ENST00000493475 FAUP35544 74 aaKnown RBP8.36□□□□□ -1.07
COL6A3-213ENST00000493475 PSMB3P49720 205 aa8.36□□□□□ -1.07
COL6A3-213ENST00000493475 MEOX2P50222 304 aa8.36□□□□□ -1.07
COL6A3-213ENST00000493475 RAB11AP62491 216 aa8.36□□□□□ -1.07
COL6A3-213ENST00000493475 SMCO1Q147U7 214 aa8.36□□□□□ -1.07
COL6A3-213ENST00000493475 USF2Q15853 346 aaPredicted RBP8.36□□□□□ -1.07
COL6A3-213ENST00000493475 NMSQ5H8A3 153 aa8.36□□□□□ -1.07
COL6A3-213ENST00000493475 FOXI2Q6ZQN5 318 aa8.36□□□□□ -1.07
COL6A3-213ENST00000493475 Q6ZRM9 215 aa8.36□□□□□ -1.07
COL6A3-213ENST00000493475 CLVS1Q8IUQ0 354 aaPredicted RBP8.36□□□□□ -1.07
COL6A3-213ENST00000493475 CSNK1G2-AS1Q8NCQ2 148 aa8.36□□□□□ -1.07
COL6A3-213ENST00000493475 DTD1Q8TEA8 209 aa8.36□□□□□ -1.07
COL6A3-213ENST00000493475 GPR146Q96CH1 333 aa8.36□□□□□ -1.07
COL6A3-213ENST00000493475 LINC00052Q96N35 136 aa8.36□□□□□ -1.07
COL6A3-213ENST00000493475 C7orf50Q9BRJ6 194 aaKnown RBP8.36□□□□□ -1.07
COL6A3-213ENST00000493475 RSL24D1Q9UHA3 163 aaKnown RBP8.36□□□□□ -1.07
COL6A3-213ENST00000493475 KMT2AQ03164 3969 aa8.35□□□□□ -1.07
COL6A3-213ENST00000493475 A0A0B4J2A0 478 aa8.35□□□□□ -1.07
COL6A3-213ENST00000493475 CTDSPLO15194 276 aa8.35□□□□□ -1.07
COL6A3-213ENST00000493475 HBE1P02100 147 aa8.35□□□□□ -1.07
COL6A3-213ENST00000493475 PSG1P11464 419 aa8.35□□□□□ -1.07
COL6A3-213ENST00000493475 GPX4P36969 197 aaPredicted RBP8.35□□□□□ -1.07
COL6A3-213ENST00000493475 EMP1P54849 157 aa8.35□□□□□ -1.07
COL6A3-213ENST00000493475 SUPT4H1P63272 117 aaKnown RBP8.35□□□□□ -1.07
COL6A3-213ENST00000493475 CTF1Q16619 201 aa8.35□□□□□ -1.07
COL6A3-213ENST00000493475 GPR141Q7Z602 305 aa8.35□□□□□ -1.07
COL6A3-213ENST00000493475 OR4B1Q8NGF8 309 aa8.35□□□□□ -1.07
COL6A3-213ENST00000493475 OR1S1Q8NH92 325 aa8.35□□□□□ -1.07
COL6A3-213ENST00000493475 DIRAS2Q96HU8 199 aa8.35□□□□□ -1.07
COL6A3-213ENST00000493475 RTBDNQ9BSG5 229 aaPredicted RBP8.35□□□□□ -1.07
COL6A3-213ENST00000493475 MCUBQ9NWR8 336 aa8.35□□□□□ -1.07
COL6A3-213ENST00000493475 SHPKQ9UHJ6 478 aa8.35□□□□□ -1.07
COL6A3-213ENST00000493475 GPR132Q9UNW8 380 aa8.35□□□□□ -1.07
COL6A3-213ENST00000493475 IGHV3OR16-12A0A075B7B8 117 aa8.34□□□□□ -1.07
COL6A3-213ENST00000493475 ISLRO14498 428 aa8.34□□□□□ -1.07
COL6A3-213ENST00000493475 MED6O75586 246 aa8.34□□□□□ -1.07
COL6A3-213ENST00000493475 GALR1P47211 349 aa8.34□□□□□ -1.07
COL6A3-213ENST00000493475 C12orf74Q32Q52 190 aa8.34□□□□□ -1.07
COL6A3-213ENST00000493475 S100A7AQ86SG5 101 aa8.34□□□□□ -1.07
COL6A3-213ENST00000493475 OR8I2Q8N0Y5 310 aa8.34□□□□□ -1.07
COL6A3-213ENST00000493475 OR4C16Q8NGL9 310 aa8.34□□□□□ -1.07
COL6A3-213ENST00000493475 CLUHP3Q96NS8 147 aa8.34□□□□□ -1.07
COL6A3-213ENST00000493475 CIB3Q96Q77 187 aaPredicted RBP8.34□□□□□ -1.07
COL6A3-213ENST00000493475 TMEM208Q9BTX3 173 aa8.34□□□□□ -1.07
COL6A3-213ENST00000493475 SAV1Q9H4B6 383 aaPredicted RBP8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms