RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 KIR2DL5BA0A0G2JN68 375 aa18.19■□□□□ 0.5
UPF3A-209ENST00000492270 KIR2DL5BA0A0G2JPC4 375 aa18.19■□□□□ 0.5
UPF3A-209ENST00000492270 K7EQG2 157 aa18.19■□□□□ 0.5
UPF3A-209ENST00000492270 IFNA21P01568 189 aa18.19■□□□□ 0.5
UPF3A-209ENST00000492270 ID3Q02535 119 aa18.19■□□□□ 0.5
UPF3A-209ENST00000492270 SPANXN5Q5MJ07 72 aa18.19■□□□□ 0.5
UPF3A-209ENST00000492270 KIR2DL5AQ8N109 375 aa18.19■□□□□ 0.5
UPF3A-209ENST00000492270 STPG3Q8N7X2 389 aa18.19■□□□□ 0.5
UPF3A-209ENST00000492270 KIR2DL5BQ8NHK3 375 aa18.19■□□□□ 0.5
UPF3A-209ENST00000492270 RNF125Q96EQ8 232 aa18.19■□□□□ 0.5
UPF3A-209ENST00000492270 CCDC32Q9BV29 185 aa18.19■□□□□ 0.5
UPF3A-209ENST00000492270 TENM2Q9NT68 2774 aa18.18■□□□□ 0.5
UPF3A-209ENST00000492270 TRAV6A0A075B6T7 132 aa18.18■□□□□ 0.5
UPF3A-209ENST00000492270 IGKV1OR2-108A0A075B7D4 117 aa18.18■□□□□ 0.5
UPF3A-209ENST00000492270 A6NHS1 94 aa18.18■□□□□ 0.5
UPF3A-209ENST00000492270 TCRBP04435 133 aa18.18■□□□□ 0.5
UPF3A-209ENST00000492270 NKX2-1P43699 371 aaPredicted RBP18.18■□□□□ 0.5
UPF3A-209ENST00000492270 Q6ZWC4 215 aa18.18■□□□□ 0.5
UPF3A-209ENST00000492270 DCANP1Q8TF63 244 aa18.18■□□□□ 0.5
UPF3A-209ENST00000492270 MITD1Q8WV92 249 aa18.18■□□□□ 0.5
UPF3A-209ENST00000492270 PBDC1Q9BVG4 233 aa18.18■□□□□ 0.5
UPF3A-209ENST00000492270 UBE2CO00762 179 aa18.17■□□□□ 0.5
UPF3A-209ENST00000492270 SPRY2O43597 315 aa18.17■□□□□ 0.5
UPF3A-209ENST00000492270 RPP30P78346 268 aaKnown RBP18.17■□□□□ 0.5
UPF3A-209ENST00000492270 RYR3Q15413 4870 aa18.16■□□□□ 0.5
UPF3A-209ENST00000492270 BUB3O43684 328 aa18.16■□□□□ 0.5
UPF3A-209ENST00000492270 SSSCA1O60232 199 aa18.16■□□□□ 0.5
UPF3A-209ENST00000492270 ZNF688P0C7X2 276 aa18.16■□□□□ 0.5
UPF3A-209ENST00000492270 OR2F1Q13607 317 aa18.16■□□□□ 0.5
UPF3A-209ENST00000492270 IAH1Q2TAA2 248 aaPredicted RBP18.16■□□□□ 0.5
UPF3A-209ENST00000492270 LINC00299Q6ZSB3 139 aa18.16■□□□□ 0.5
UPF3A-209ENST00000492270 NUDT15Q9NV35 164 aa18.16■□□□□ 0.5
UPF3A-209ENST00000492270 TP53TG1Q9Y2A0 90 aa18.16■□□□□ 0.5
UPF3A-209ENST00000492270 STRAPQ9Y3F4 350 aaKnown RBP18.16■□□□□ 0.5
UPF3A-209ENST00000492270 HELTA6NFD8 242 aa18.15■□□□□ 0.5
UPF3A-209ENST00000492270 SCGB1D2O95969 90 aa18.15■□□□□ 0.5
UPF3A-209ENST00000492270 THAP8Q8NA92 274 aa18.15■□□□□ 0.5
UPF3A-209ENST00000492270 RNF183Q96D59 192 aa18.15■□□□□ 0.5
UPF3A-209ENST00000492270 TRGV9Q99603 122 aa18.15■□□□□ 0.5
UPF3A-209ENST00000492270 SEC22CQ9BRL7 303 aa18.15■□□□□ 0.5
UPF3A-209ENST00000492270 TBC1D24Q9ULP9 559 aa18.15■□□□□ 0.5
UPF3A-209ENST00000492270 DYNC2H1Q8NCM8 4307 aaKnown RBP18.15■□□□□ 0.5
UPF3A-209ENST00000492270 CCSO14618 274 aa18.14■□□□□ 0.49
UPF3A-209ENST00000492270 EIF2B2P49770 351 aaKnown RBP18.14■□□□□ 0.49
UPF3A-209ENST00000492270 LYZP61626 148 aa18.14■□□□□ 0.49
UPF3A-209ENST00000492270 ZBTB8BQ8NAP8 495 aaPredicted RBP18.14■□□□□ 0.49
UPF3A-209ENST00000492270 CSTL1Q9H114 145 aa18.14■□□□□ 0.49
UPF3A-209ENST00000492270 PSENENQ9NZ42 101 aa18.14■□□□□ 0.49
UPF3A-209ENST00000492270 PAX9P55771 341 aa18.13■□□□□ 0.49
UPF3A-209ENST00000492270 SIGLEC15Q6ZMC9 328 aa18.13■□□□□ 0.49
UPF3A-209ENST00000492270 ACOT7LQ6ZUV0 252 aa18.13■□□□□ 0.49
UPF3A-209ENST00000492270 S100ZQ8WXG8 99 aa18.13■□□□□ 0.49
UPF3A-209ENST00000492270 LYSTQ99698 3801 aa18.13■□□□□ 0.49
UPF3A-209ENST00000492270 CCNKO75909 580 aa18.12■□□□□ 0.49
UPF3A-209ENST00000492270 OR8G2PQ6IF36 304 aa18.12■□□□□ 0.49
UPF3A-209ENST00000492270 GSKIPQ9P0R6 139 aa18.12■□□□□ 0.49
UPF3A-209ENST00000492270 A0A0J9YWU9 116 aa18.11■□□□□ 0.49
UPF3A-209ENST00000492270 PMS2P5A8MQ11 134 aa18.11■□□□□ 0.49
UPF3A-209ENST00000492270 FABP1P07148 127 aa18.11■□□□□ 0.49
UPF3A-209ENST00000492270 AP2S1P53680 142 aaPredicted RBP18.11■□□□□ 0.49
UPF3A-209ENST00000492270 EWSR1Q01844 656 aaKnown RBP eCLIP18.11■□□□□ 0.49
UPF3A-209ENST00000492270 AKR1C1Q04828 323 aa18.11■□□□□ 0.49
UPF3A-209ENST00000492270 SMIM8Q96KF7 97 aa18.11■□□□□ 0.49
UPF3A-209ENST00000492270 RCL1Q9Y2P8 373 aaKnown RBP18.11■□□□□ 0.49
UPF3A-209ENST00000492270 KNCNA6PVL3 124 aa18.1■□□□□ 0.49
UPF3A-209ENST00000492270 SNRPGP15A8MWD9 76 aa18.1■□□□□ 0.49
UPF3A-209ENST00000492270 H2AFB2P0C5Z0 115 aa18.1■□□□□ 0.49
UPF3A-209ENST00000492270 ZNF431Q8TF32 576 aaPredicted RBP18.1■□□□□ 0.49
UPF3A-209ENST00000492270 PTTG2Q9NZH5 202 aa18.1■□□□□ 0.49
UPF3A-209ENST00000492270 FAM240BA0A1B0GVZ2 78 aa18.09■□□□□ 0.49
UPF3A-209ENST00000492270 CA1P00915 261 aaPredicted RBP18.09■□□□□ 0.49
UPF3A-209ENST00000492270 GATA2P23769 480 aaPredicted RBP18.09■□□□□ 0.49
UPF3A-209ENST00000492270 ASAH1Q13510 395 aa18.09■□□□□ 0.49
UPF3A-209ENST00000492270 PSMG4Q5JS54 123 aa18.09■□□□□ 0.49
UPF3A-209ENST00000492270 TMEM182Q6ZP80 229 aaPredicted RBP18.09■□□□□ 0.49
UPF3A-209ENST00000492270 STHQ8IWL8 128 aa18.09■□□□□ 0.49
UPF3A-209ENST00000492270 NRN1Q9NPD7 142 aa18.09■□□□□ 0.49
UPF3A-209ENST00000492270 SMCO3A2RU48 225 aa18.08■□□□□ 0.48
UPF3A-209ENST00000492270 MBPP02686 304 aaPredicted RBP18.08■□□□□ 0.48
UPF3A-209ENST00000492270 METTL15P1P0C7V9 234 aa18.08■□□□□ 0.48
UPF3A-209ENST00000492270 TMEM14EPQ6UXP3 125 aa18.08■□□□□ 0.48
UPF3A-209ENST00000492270 GSG1LQ6UXU4 331 aa18.08■□□□□ 0.48
UPF3A-209ENST00000492270 TRPT1Q86TN4 253 aaKnown RBP18.08■□□□□ 0.48
UPF3A-209ENST00000492270 FAM25EA8MYX2 175 aa18.07■□□□□ 0.48
UPF3A-209ENST00000492270 NUP62P37198 522 aaPredicted RBP18.07■□□□□ 0.48
UPF3A-209ENST00000492270 RRAS2P62070 204 aaPredicted RBP18.07■□□□□ 0.48
UPF3A-209ENST00000492270 IL17DQ8TAD2 202 aa18.07■□□□□ 0.48
UPF3A-209ENST00000492270 IFITM3Q01628 133 aa18.06■□□□□ 0.48
UPF3A-209ENST00000492270 ZNF846Q147U1 533 aa18.06■□□□□ 0.48
UPF3A-209ENST00000492270 ACTL10Q5JWF8 245 aa18.06■□□□□ 0.48
UPF3A-209ENST00000492270 MZT2BQ6NZ67 158 aa18.06■□□□□ 0.48
UPF3A-209ENST00000492270 TMEM144Q7Z5S9 345 aa18.06■□□□□ 0.48
UPF3A-209ENST00000492270 C12orf45Q8N5I9 185 aaPredicted RBP18.06■□□□□ 0.48
UPF3A-209ENST00000492270 PPP1R14BQ96C90 147 aa18.06■□□□□ 0.48
UPF3A-209ENST00000492270 RAB40CQ96S21 281 aa18.06■□□□□ 0.48
UPF3A-209ENST00000492270 WDR12Q9GZL7 423 aaKnown RBP18.06■□□□□ 0.48
UPF3A-209ENST00000492270 UPK1BO75841 260 aa18.05■□□□□ 0.48
UPF3A-209ENST00000492270 PFDN2Q9UHV9 154 aa18.05■□□□□ 0.48
UPF3A-209ENST00000492270 C7orf66A4D0T2 115 aa18.04■□□□□ 0.48
UPF3A-209ENST00000492270 TSC22D2O75157 780 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms