RNA–Protein interactions for RNA: ENST00000490866.2

SYNE1-229, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 581 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-229ENST00000490866 HIVEP1P15822 2718 aa5.43□□□□□ -1.54
SYNE1-229ENST00000490866 MDFIC2A0A1B0GVS7 189 aa5.43□□□□□ -1.54
SYNE1-229ENST00000490866 CLPSL1A2RUU4 121 aa5.43□□□□□ -1.54
SYNE1-229ENST00000490866 G3V318 75 aa5.43□□□□□ -1.54
SYNE1-229ENST00000490866 K7EIM0 57 aa5.43□□□□□ -1.54
SYNE1-229ENST00000490866 K7EMT4 169 aa5.43□□□□□ -1.54
SYNE1-229ENST00000490866 NDUFA4O00483 81 aa5.43□□□□□ -1.54
SYNE1-229ENST00000490866 GGCTO75223 188 aaKnown RBP5.43□□□□□ -1.54
SYNE1-229ENST00000490866 CXorf1O96002 111 aa5.43□□□□□ -1.54
SYNE1-229ENST00000490866 IFNA1P01562 189 aa5.43□□□□□ -1.54
SYNE1-229ENST00000490866 REG1AP05451 166 aa5.43□□□□□ -1.54
SYNE1-229ENST00000490866 IGLC1P0CG04 106 aa5.43□□□□□ -1.54
SYNE1-229ENST00000490866 MYOD1P15172 320 aa5.43□□□□□ -1.54
SYNE1-229ENST00000490866 PAX6P26367 422 aa5.43□□□□□ -1.54
SYNE1-229ENST00000490866 ELLP55199 621 aaPredicted RBP5.43□□□□□ -1.54
SYNE1-229ENST00000490866 TPPP2P59282 170 aa5.43□□□□□ -1.54
SYNE1-229ENST00000490866 RUNX1Q01196 453 aa5.43□□□□□ -1.54
SYNE1-229ENST00000490866 CFHR3Q02985 330 aa5.43□□□□□ -1.54
SYNE1-229ENST00000490866 ARL16Q0P5N6 197 aa5.43□□□□□ -1.54
SYNE1-229ENST00000490866 C1orf194Q5T5A4 169 aa5.43□□□□□ -1.54
SYNE1-229ENST00000490866 ZNF343Q6P1L6 599 aa5.43□□□□□ -1.54
SYNE1-229ENST00000490866 UQCC3Q6UW78 93 aa5.43□□□□□ -1.54
SYNE1-229ENST00000490866 IL34Q6ZMJ4 242 aa5.43□□□□□ -1.54
SYNE1-229ENST00000490866 ZNF600Q6ZNG1 722 aa5.43□□□□□ -1.54
SYNE1-229ENST00000490866 HAPLN4Q86UW8 402 aa5.43□□□□□ -1.54
SYNE1-229ENST00000490866 GPHB5Q86YW7 130 aa5.43□□□□□ -1.54
SYNE1-229ENST00000490866 KRTAP19-1Q8IUB9 90 aa5.43□□□□□ -1.54
SYNE1-229ENST00000490866 KLHDC1Q8N7A1 406 aa5.43□□□□□ -1.54
SYNE1-229ENST00000490866 STPG3Q8N7X2 389 aa5.43□□□□□ -1.54
SYNE1-229ENST00000490866 OR10G4Q8NGN3 311 aa5.43□□□□□ -1.54
SYNE1-229ENST00000490866 OR10G9Q8NGN4 311 aa5.43□□□□□ -1.54
SYNE1-229ENST00000490866 OR10G7Q8NGN6 311 aa5.43□□□□□ -1.54
SYNE1-229ENST00000490866 ZNF502Q8TBZ5 544 aa5.43□□□□□ -1.54
SYNE1-229ENST00000490866 TMED6Q8WW62 240 aa5.43□□□□□ -1.54
SYNE1-229ENST00000490866 MBD3L1Q8WWY6 194 aa5.43□□□□□ -1.54
SYNE1-229ENST00000490866 GRAMD2BQ96HH9 432 aa5.43□□□□□ -1.54
SYNE1-229ENST00000490866 TCEAL7Q9BRU2 100 aa5.43□□□□□ -1.54
SYNE1-229ENST00000490866 ZNF702PQ9H963 129 aa5.43□□□□□ -1.54
SYNE1-229ENST00000490866 WFDC1Q9HC57 220 aa5.43□□□□□ -1.54
SYNE1-229ENST00000490866 TECRQ9NZ01 308 aaKnown RBP5.43□□□□□ -1.54
SYNE1-229ENST00000490866 PEF1Q9UBV8 284 aaKnown RBP5.43□□□□□ -1.54
SYNE1-229ENST00000490866 PXMP4Q9Y6I8 212 aa5.43□□□□□ -1.54
SYNE1-229ENST00000490866 ARL2-SNX15V9GYD0 113 aa5.43□□□□□ -1.54
SYNE1-229ENST00000490866 SONP18583 2426 aaKnown RBP5.43□□□□□ -1.54
SYNE1-229ENST00000490866 ZNF469Q96JG9 3925 aaPredicted RBP5.42□□□□□ -1.54
SYNE1-229ENST00000490866 CTXND1A0A1B0GTU2 59 aa5.42□□□□□ -1.54
SYNE1-229ENST00000490866 RAB19A4D1S5 217 aa5.42□□□□□ -1.54
SYNE1-229ENST00000490866 SEC14L6B5MCN3 397 aa5.42□□□□□ -1.54
SYNE1-229ENST00000490866 INAFM1C9JVW0 142 aa5.42□□□□□ -1.54
SYNE1-229ENST00000490866 TGOLN2O43493 480 aa5.42□□□□□ -1.54
SYNE1-229ENST00000490866 COX7A2P2O60397 106 aa5.42□□□□□ -1.54
SYNE1-229ENST00000490866 OR2J3O76001 311 aa5.42□□□□□ -1.54
SYNE1-229ENST00000490866 HSPB1P04792 205 aaKnown RBP5.42□□□□□ -1.54
SYNE1-229ENST00000490866 CTSGP08311 255 aa5.42□□□□□ -1.54
SYNE1-229ENST00000490866 PEA15Q15121 130 aa5.42□□□□□ -1.54
SYNE1-229ENST00000490866 GUK1Q16774 197 aa5.42□□□□□ -1.54
SYNE1-229ENST00000490866 KHDC3LQ587J8 217 aa5.42□□□□□ -1.54
SYNE1-229ENST00000490866 FFAR4Q5NUL3 377 aa5.42□□□□□ -1.54
SYNE1-229ENST00000490866 C10orf113Q5VZT2 155 aa5.42□□□□□ -1.54
SYNE1-229ENST00000490866 ALKAL2Q6UX46 152 aa5.42□□□□□ -1.54
SYNE1-229ENST00000490866 OR5AU1Q8NGC0 362 aa5.42□□□□□ -1.54
SYNE1-229ENST00000490866 LYPD6BQ8NI32 183 aa5.42□□□□□ -1.54
SYNE1-229ENST00000490866 MGST2Q99735 147 aa5.42□□□□□ -1.54
SYNE1-229ENST00000490866 ELOVL1Q9BW60 279 aa5.42□□□□□ -1.54
SYNE1-229ENST00000490866 GGTLC1Q9BX51 225 aa5.42□□□□□ -1.54
SYNE1-229ENST00000490866 FNDC4Q9H6D8 234 aaPredicted RBP5.42□□□□□ -1.54
SYNE1-229ENST00000490866 TMEM231Q9H6L2 316 aa5.42□□□□□ -1.54
SYNE1-229ENST00000490866 TMEM167BQ9NRX6 74 aa5.42□□□□□ -1.54
SYNE1-229ENST00000490866 SERTAD4Q9NUC0 356 aa5.42□□□□□ -1.54
SYNE1-229ENST00000490866 FUT9Q9Y231 359 aa5.42□□□□□ -1.54
SYNE1-229ENST00000490866 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.42□□□□□ -1.54
SYNE1-229ENST00000490866 AKAP9Q99996 3911 aa5.42□□□□□ -1.54
SYNE1-229ENST00000490866 SETXQ7Z333 2677 aaKnown RBP5.41□□□□□ -1.54
SYNE1-229ENST00000490866 LINC01548A6NM66 108 aa5.41□□□□□ -1.54
SYNE1-229ENST00000490866 LGALS9O00182 355 aa5.41□□□□□ -1.54
SYNE1-229ENST00000490866 LINC00869P0C866 280 aa5.41□□□□□ -1.54
SYNE1-229ENST00000490866 NPPCP23582 126 aa5.41□□□□□ -1.54
SYNE1-229ENST00000490866 ARL3P36405 182 aa5.41□□□□□ -1.54
SYNE1-229ENST00000490866 CDC34P49427 236 aaPredicted RBP5.41□□□□□ -1.54
SYNE1-229ENST00000490866 MFAP2P55001 183 aa5.41□□□□□ -1.54
SYNE1-229ENST00000490866 NDPQ00604 133 aa5.41□□□□□ -1.54
SYNE1-229ENST00000490866 MLANAQ16655 118 aa5.41□□□□□ -1.54
SYNE1-229ENST00000490866 FAM74A1Q5RGS3 127 aa5.41□□□□□ -1.54
SYNE1-229ENST00000490866 LCE3BQ5TA77 95 aa5.41□□□□□ -1.54
SYNE1-229ENST00000490866 Q6ZSV7 163 aa5.41□□□□□ -1.54
SYNE1-229ENST00000490866 IL17RELQ6ZVW7 336 aa5.41□□□□□ -1.54
SYNE1-229ENST00000490866 LYPD1Q8N2G4 141 aa5.41□□□□□ -1.54
SYNE1-229ENST00000490866 EIF4E3Q8N5X7 224 aaKnown RBP5.41□□□□□ -1.54
SYNE1-229ENST00000490866 ARL6IP6Q8N6S5 226 aa5.41□□□□□ -1.54
SYNE1-229ENST00000490866 ZNF491Q8N8L2 437 aa5.41□□□□□ -1.54
SYNE1-229ENST00000490866 MYOZ3Q8TDC0 251 aa5.41□□□□□ -1.54
SYNE1-229ENST00000490866 SFT2D1Q8WV19 159 aa5.41□□□□□ -1.54
SYNE1-229ENST00000490866 MARC2Q969Z3 335 aa5.41□□□□□ -1.54
SYNE1-229ENST00000490866 MS4A10Q96PG2 267 aa5.41□□□□□ -1.54
SYNE1-229ENST00000490866 METTL26Q96S19 204 aa5.41□□□□□ -1.54
SYNE1-229ENST00000490866 SMR3AQ99954 134 aa5.41□□□□□ -1.54
SYNE1-229ENST00000490866 MANBALQ9NQG1 85 aa5.41□□□□□ -1.54
SYNE1-229ENST00000490866 RPRMQ9NS64 109 aa5.41□□□□□ -1.54
SYNE1-229ENST00000490866 MRPL27Q9P0M9 148 aaKnown RBP5.41□□□□□ -1.54
SYNE1-229ENST00000490866 PEMTQ9UBM1 199 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms