RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 CFDP00746 253 aaPredicted RBP8.23□□□□□ -1.09
VPS13D-210ENST00000489961 DEFA6Q01524 100 aa8.23□□□□□ -1.09
VPS13D-210ENST00000489961 EWSR1Q01844 656 aaKnown RBP eCLIP8.23□□□□□ -1.09
VPS13D-210ENST00000489961 ZNF90Q03938 601 aa8.23□□□□□ -1.09
VPS13D-210ENST00000489961 BAXQ07812 192 aa8.23□□□□□ -1.09
VPS13D-210ENST00000489961 ATP6V1FQ16864 119 aa8.23□□□□□ -1.09
VPS13D-210ENST00000489961 CD300EQ496F6 205 aaPredicted RBP8.23□□□□□ -1.09
VPS13D-210ENST00000489961 TEPPQ6URK8 271 aa8.23□□□□□ -1.09
VPS13D-210ENST00000489961 RNF126Q9BV68 326 aa8.23□□□□□ -1.09
VPS13D-210ENST00000489961 TMEM147Q9BVK8 224 aa8.23□□□□□ -1.09
VPS13D-210ENST00000489961 RHPN1-AS1Q9BWJ2 59 aa8.23□□□□□ -1.09
VPS13D-210ENST00000489961 TMEM231Q9H6L2 316 aa8.23□□□□□ -1.09
VPS13D-210ENST00000489961 UQCC1Q9NVA1 299 aa8.23□□□□□ -1.09
VPS13D-210ENST00000489961 MBD2Q9UBB5 411 aa8.23□□□□□ -1.09
VPS13D-210ENST00000489961 MLXQ9UH92 298 aa8.23□□□□□ -1.09
VPS13D-210ENST00000489961 CMYA5Q8N3K9 4069 aa8.23□□□□□ -1.09
VPS13D-210ENST00000489961 IGHV3-49A0A0A0MS15 119 aa8.22□□□□□ -1.09
VPS13D-210ENST00000489961 TRAV25A0A0B4J276 109 aa8.22□□□□□ -1.09
VPS13D-210ENST00000489961 WI2-2373I1.2A0A1W2PRP0 233 aa8.22□□□□□ -1.09
VPS13D-210ENST00000489961 CHEK1O14757 476 aa8.22□□□□□ -1.09
VPS13D-210ENST00000489961 HNRNPCP07910 306 aaKnown RBP eCLIP8.22□□□□□ -1.09
VPS13D-210ENST00000489961 LYL1P12980 280 aa8.22□□□□□ -1.09
VPS13D-210ENST00000489961 GP9P14770 177 aa8.22□□□□□ -1.09
VPS13D-210ENST00000489961 CRYBB3P26998 211 aa8.22□□□□□ -1.09
VPS13D-210ENST00000489961 LYZP61626 148 aa8.22□□□□□ -1.09
VPS13D-210ENST00000489961 SELENOTP62341 195 aa8.22□□□□□ -1.09
VPS13D-210ENST00000489961 NHLH2Q02577 135 aa8.22□□□□□ -1.09
VPS13D-210ENST00000489961 OR2F1Q13607 317 aa8.22□□□□□ -1.09
VPS13D-210ENST00000489961 RAB31Q13636 194 aa8.22□□□□□ -1.09
VPS13D-210ENST00000489961 LAMTOR1Q6IAA8 161 aa8.22□□□□□ -1.09
VPS13D-210ENST00000489961 RBPMS2Q6ZRY4 209 aaKnown RBP8.22□□□□□ -1.09
VPS13D-210ENST00000489961 CYP2G1PQ6ZSU1 146 aa8.22□□□□□ -1.09
VPS13D-210ENST00000489961 BPIFCQ8NFQ6 507 aa8.22□□□□□ -1.09
VPS13D-210ENST00000489961 RNF125Q96EQ8 232 aa8.22□□□□□ -1.09
VPS13D-210ENST00000489961 PBDC1Q9BVG4 233 aa8.22□□□□□ -1.09
VPS13D-210ENST00000489961 AURKAIP1Q9NWT8 199 aaPredicted RBP8.22□□□□□ -1.09
VPS13D-210ENST00000489961 PFDN2Q9UHV9 154 aa8.22□□□□□ -1.09
VPS13D-210ENST00000489961 RABAC1Q9UI14 185 aa8.22□□□□□ -1.09
VPS13D-210ENST00000489961 NBEAL1Q6ZS30 2694 aa8.21□□□□□ -1.09
VPS13D-210ENST00000489961 IZUMO1RA6ND01 250 aa8.21□□□□□ -1.1
VPS13D-210ENST00000489961 PRB2P02812 416 aaPredicted RBP8.21□□□□□ -1.1
VPS13D-210ENST00000489961 CD5P06127 495 aa8.21□□□□□ -1.1
VPS13D-210ENST00000489961 RPL12P30050 165 aaKnown RBP8.21□□□□□ -1.1
VPS13D-210ENST00000489961 NUP62P37198 522 aaPredicted RBP8.21□□□□□ -1.1
VPS13D-210ENST00000489961 USF2Q15853 346 aaPredicted RBP8.21□□□□□ -1.1
VPS13D-210ENST00000489961 GUCA2BQ16661 112 aa8.21□□□□□ -1.1
VPS13D-210ENST00000489961 VWC2Q2TAL6 325 aa8.21□□□□□ -1.1
VPS13D-210ENST00000489961 ZNF546Q86UE3 836 aa8.21□□□□□ -1.1
VPS13D-210ENST00000489961 TMEM61Q8N0U2 210 aa8.21□□□□□ -1.1
VPS13D-210ENST00000489961 OR5C1Q8NGR4 320 aa8.21□□□□□ -1.1
VPS13D-210ENST00000489961 GRAMD2BQ96HH9 432 aa8.21□□□□□ -1.1
VPS13D-210ENST00000489961 PRR25Q96S07 402 aa8.21□□□□□ -1.1
VPS13D-210ENST00000489961 VSIRQ9H7M9 311 aa8.21□□□□□ -1.1
VPS13D-210ENST00000489961 SELENOKQ9Y6D0 94 aa8.21□□□□□ -1.1
VPS13D-210ENST00000489961 IGHV3OR16-13A0A075B7E8 117 aa8.2□□□□□ -1.1
VPS13D-210ENST00000489961 IGHV3-74A0A0B4J1X5 117 aa8.2□□□□□ -1.1
VPS13D-210ENST00000489961 UBE2L5PA0A1B0GUS4 154 aa8.2□□□□□ -1.1
VPS13D-210ENST00000489961 APOHP02749 345 aaPredicted RBP8.2□□□□□ -1.1
VPS13D-210ENST00000489961 S100A7P31151 101 aa8.2□□□□□ -1.1
VPS13D-210ENST00000489961 EIF2B2P49770 351 aaKnown RBP8.2□□□□□ -1.1
VPS13D-210ENST00000489961 GTSCR1Q86UQ5 136 aa8.2□□□□□ -1.1
VPS13D-210ENST00000489961 OR2T35Q8NGX2 323 aa8.2□□□□□ -1.1
VPS13D-210ENST00000489961 ST8SIA2Q92186 375 aa8.2□□□□□ -1.1
VPS13D-210ENST00000489961 RNF2Q99496 336 aa8.2□□□□□ -1.1
VPS13D-210ENST00000489961 WDR83OSQ9Y284 106 aa8.2□□□□□ -1.1
VPS13D-210ENST00000489961 LSM4Q9Y4Z0 139 aaKnown RBP8.2□□□□□ -1.1
VPS13D-210ENST00000489961 HSPB11Q9Y547 144 aa8.2□□□□□ -1.1
VPS13D-210ENST00000489961 SORL1Q92673 2214 aa8.19□□□□□ -1.1
VPS13D-210ENST00000489961 IGHV3-66A0A0C4DH42 116 aa8.19□□□□□ -1.1
VPS13D-210ENST00000489961 ZNF785A8K8V0 405 aa8.19□□□□□ -1.1
VPS13D-210ENST00000489961 TSPAN4O14817 238 aa8.19□□□□□ -1.1
VPS13D-210ENST00000489961 AGPAT2O15120 278 aa8.19□□□□□ -1.1
VPS13D-210ENST00000489961 MPDU1O75352 247 aa8.19□□□□□ -1.1
VPS13D-210ENST00000489961 LINC00869P0C866 280 aa8.19□□□□□ -1.1
VPS13D-210ENST00000489961 FGF7P21781 194 aa8.19□□□□□ -1.1
VPS13D-210ENST00000489961 GATA2P23769 480 aaPredicted RBP8.19□□□□□ -1.1
VPS13D-210ENST00000489961 CAMLGP49069 296 aa8.19□□□□□ -1.1
VPS13D-210ENST00000489961 PAFAH1B2P68402 229 aa8.19□□□□□ -1.1
VPS13D-210ENST00000489961 CLINT1Q14677 625 aa8.19□□□□□ -1.1
VPS13D-210ENST00000489961 Q6ZNX1 250 aa8.19□□□□□ -1.1
VPS13D-210ENST00000489961 TCF24Q7RTU0 167 aa8.19□□□□□ -1.1
VPS13D-210ENST00000489961 MRAPQ8TCY5 172 aa8.19□□□□□ -1.1
VPS13D-210ENST00000489961 PPP1R14BQ96C90 147 aa8.19□□□□□ -1.1
VPS13D-210ENST00000489961 MGST2Q99735 147 aa8.19□□□□□ -1.1
VPS13D-210ENST00000489961 SPAG8Q99932 426 aaPredicted RBP8.19□□□□□ -1.1
VPS13D-210ENST00000489961 SLC45A2Q9UMX9 530 aa8.19□□□□□ -1.1
VPS13D-210ENST00000489961 U3KQE9 123 aa8.19□□□□□ -1.1
VPS13D-210ENST00000489961 FBN3Q75N90 2809 aa8.19□□□□□ -1.1
VPS13D-210ENST00000489961 NOTCH1P46531 2555 aa8.18□□□□□ -1.1
VPS13D-210ENST00000489961 FXYD6-FXYD2A0A087WZ82 144 aa8.18□□□□□ -1.1
VPS13D-210ENST00000489961 K7EIL1 84 aa8.18□□□□□ -1.1
VPS13D-210ENST00000489961 DFFBO76075 338 aa8.18□□□□□ -1.1
VPS13D-210ENST00000489961 ORM2P19652 201 aa8.18□□□□□ -1.1
VPS13D-210ENST00000489961 PLP1P60201 277 aa8.18□□□□□ -1.1
VPS13D-210ENST00000489961 RPL11P62913 178 aaKnown RBP8.18□□□□□ -1.1
VPS13D-210ENST00000489961 Q5BKY6 102 aa8.18□□□□□ -1.1
VPS13D-210ENST00000489961 PXDC1Q5TGL8 231 aa8.18□□□□□ -1.1
VPS13D-210ENST00000489961 C16orf54Q6UWD8 224 aa8.18□□□□□ -1.1
VPS13D-210ENST00000489961 TMEM182Q6ZP80 229 aaPredicted RBP8.18□□□□□ -1.1
VPS13D-210ENST00000489961 S100A7AQ86SG5 101 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms