RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-231	ENST00000488905	RD3L	P0DJH9	198 aa		13.24	□□□□□ -0.29
HDAC6-231	ENST00000488905	SULT1A3	P0DMM9	295 aa		13.24	□□□□□ -0.29
HDAC6-231	ENST00000488905	SULT1A4	P0DMN0	295 aa		13.24	□□□□□ -0.29
HDAC6-231	ENST00000488905	HLA-DRB4	P13762	266 aa		13.24	□□□□□ -0.29
HDAC6-231	ENST00000488905	LINC00336	Q6ZUF6	198 aa		13.24	□□□□□ -0.29
HDAC6-231	ENST00000488905	GPR132	Q9UNW8	380 aa		13.24	□□□□□ -0.29
HDAC6-231	ENST00000488905	HLA-DRB4	X5D2U9	266 aa		13.24	□□□□□ -0.29
HDAC6-231	ENST00000488905	AKAIN1	P0CW23	69 aa		13.23	□□□□□ -0.29
HDAC6-231	ENST00000488905	PSG1	P11464	419 aa		13.23	□□□□□ -0.29
HDAC6-231	ENST00000488905	NUP62	P37198	522 aa	Predicted RBP	13.23	□□□□□ -0.29
HDAC6-231	ENST00000488905	NKX2-1	P43699	371 aa	Predicted RBP	13.23	□□□□□ -0.29
HDAC6-231	ENST00000488905	OR51G1	Q8NGK1	321 aa		13.23	□□□□□ -0.29
HDAC6-231	ENST00000488905	IL22RA2	Q969J5	263 aa		13.23	□□□□□ -0.29
HDAC6-231	ENST00000488905	RNF125	Q96EQ8	232 aa		13.23	□□□□□ -0.29
HDAC6-231	ENST00000488905	PRRT1	Q99946	306 aa		13.23	□□□□□ -0.29
HDAC6-231	ENST00000488905	IFNA10	P01566	189 aa		13.22	□□□□□ -0.29
HDAC6-231	ENST00000488905	ZNF705A	Q6ZN79	300 aa	Predicted RBP	13.22	□□□□□ -0.29
HDAC6-231	ENST00000488905	OR51S1	Q8NGJ8	323 aa		13.22	□□□□□ -0.29
HDAC6-231	ENST00000488905	NDUFAF3	Q9BU61	184 aa		13.22	□□□□□ -0.29
HDAC6-231	ENST00000488905	SCRT1	Q9BWW7	348 aa		13.22	□□□□□ -0.29
HDAC6-231	ENST00000488905	PRR13	Q9NZ81	148 aa		13.22	□□□□□ -0.29
HDAC6-231	ENST00000488905	CTDSP2	O14595	271 aa		13.21	□□□□□ -0.29
HDAC6-231	ENST00000488905		P0DMU3	169 aa		13.21	□□□□□ -0.29
HDAC6-231	ENST00000488905	FAM231A	P0DMU4	169 aa		13.21	□□□□□ -0.29
HDAC6-231	ENST00000488905	FAM231C	P0DMU5	169 aa		13.21	□□□□□ -0.29
HDAC6-231	ENST00000488905	DTD1	Q8TEA8	209 aa		13.21	□□□□□ -0.29
HDAC6-231	ENST00000488905	NEU1	Q99519	415 aa		13.21	□□□□□ -0.29
HDAC6-231	ENST00000488905	PBDC1	Q9BVG4	233 aa		13.21	□□□□□ -0.29
HDAC6-231	ENST00000488905	HSPB7	Q9UBY9	170 aa		13.21	□□□□□ -0.29
HDAC6-231	ENST00000488905		U3KQ87	197 aa		13.21	□□□□□ -0.29
HDAC6-231	ENST00000488905	ZNF705F	A8MVS1	300 aa	Predicted RBP	13.2	□□□□□ -0.3
HDAC6-231	ENST00000488905	CTDSPL	O15194	276 aa		13.2	□□□□□ -0.3
HDAC6-231	ENST00000488905	ZNF705D	P0CH99	300 aa	Predicted RBP	13.2	□□□□□ -0.3
HDAC6-231	ENST00000488905	ZNF705B	P0CI00	300 aa	Predicted RBP	13.2	□□□□□ -0.3
HDAC6-231	ENST00000488905	IL18	Q14116	193 aa		13.2	□□□□□ -0.3
HDAC6-231	ENST00000488905	GDF5OS	Q5U4N7	250 aa		13.2	□□□□□ -0.3
HDAC6-231	ENST00000488905	OR8G2P	Q6IF36	304 aa		13.2	□□□□□ -0.3
HDAC6-231	ENST00000488905	CLVS1	Q8IUQ0	354 aa	Predicted RBP	13.2	□□□□□ -0.3
HDAC6-231	ENST00000488905	LGI3	Q8N145	548 aa		13.2	□□□□□ -0.3
HDAC6-231	ENST00000488905	POM121L12	Q8N7R1	296 aa		13.2	□□□□□ -0.3
HDAC6-231	ENST00000488905		A0A0B4J2A0	478 aa		13.19	□□□□□ -0.3
HDAC6-231	ENST00000488905		A0A1B0GVY2	172 aa		13.19	□□□□□ -0.3
HDAC6-231	ENST00000488905	CCR6	P51684	374 aa		13.19	□□□□□ -0.3
HDAC6-231	ENST00000488905	DEFB1	P60022	68 aa		13.19	□□□□□ -0.3
HDAC6-231	ENST00000488905	KLF9	Q13886	244 aa	Predicted RBP	13.19	□□□□□ -0.3
HDAC6-231	ENST00000488905	SMCO1	Q147U7	214 aa		13.19	□□□□□ -0.3
HDAC6-231	ENST00000488905	SPCS2	Q15005	226 aa		13.19	□□□□□ -0.3
HDAC6-231	ENST00000488905	RBKS	Q9H477	322 aa		13.19	□□□□□ -0.3
HDAC6-231	ENST00000488905	SHPK	Q9UHJ6	478 aa		13.19	□□□□□ -0.3
HDAC6-231	ENST00000488905	PFDN2	Q9UHV9	154 aa		13.19	□□□□□ -0.3
HDAC6-231	ENST00000488905	KCNIP3	Q9Y2W7	256 aa		13.19	□□□□□ -0.3
HDAC6-231	ENST00000488905	TMEM189	A5PLL7	270 aa		13.18	□□□□□ -0.3
HDAC6-231	ENST00000488905	ZFP92	A6NM28	416 aa		13.18	□□□□□ -0.3
HDAC6-231	ENST00000488905	IGKV3-20	P01619	116 aa		13.18	□□□□□ -0.3
HDAC6-231	ENST00000488905	PSMB3	P49720	205 aa		13.18	□□□□□ -0.3
HDAC6-231	ENST00000488905	FOXI2	Q6ZQN5	318 aa		13.18	□□□□□ -0.3
HDAC6-231	ENST00000488905	DIRAS2	Q96HU8	199 aa		13.18	□□□□□ -0.3
HDAC6-231	ENST00000488905	WDR12	Q9GZL7	423 aa	Known RBP	13.18	□□□□□ -0.3
HDAC6-231	ENST00000488905	SAV1	Q9H4B6	383 aa	Predicted RBP	13.18	□□□□□ -0.3
HDAC6-231	ENST00000488905	RABL2A	Q9UBK7	228 aa	Predicted RBP	13.18	□□□□□ -0.3
HDAC6-231	ENST00000488905	RABL2B	Q9UNT1	228 aa		13.18	□□□□□ -0.3
HDAC6-231	ENST00000488905	MUC4	Q99102	2169 aa		13.17	□□□□□ -0.3
HDAC6-231	ENST00000488905	IGKV1D-37	A0A075B6S9	117 aa		13.17	□□□□□ -0.3
HDAC6-231	ENST00000488905	ANKRD20A5P	A0PJZ0	165 aa		13.17	□□□□□ -0.3
HDAC6-231	ENST00000488905	SMIM9	A6NGZ8	99 aa		13.17	□□□□□ -0.3
HDAC6-231	ENST00000488905	SOCS3	O14543	225 aa		13.17	□□□□□ -0.3
HDAC6-231	ENST00000488905	SPART-AS1	P0CW21	52 aa		13.17	□□□□□ -0.3
HDAC6-231	ENST00000488905	EMP1	P54849	157 aa		13.17	□□□□□ -0.3
HDAC6-231	ENST00000488905	FXYD7	P58549	80 aa		13.17	□□□□□ -0.3
HDAC6-231	ENST00000488905	SUPT4H1	P63272	117 aa	Known RBP	13.17	□□□□□ -0.3
HDAC6-231	ENST00000488905	ZNF90	Q03938	601 aa		13.17	□□□□□ -0.3
HDAC6-231	ENST00000488905	GAMT	Q14353	236 aa		13.17	□□□□□ -0.3
HDAC6-231	ENST00000488905	LYZL2	Q7Z4W2	148 aa		13.17	□□□□□ -0.3
HDAC6-231	ENST00000488905	GPR141	Q7Z602	305 aa		13.17	□□□□□ -0.3
HDAC6-231	ENST00000488905	ZNF709	Q8N972	641 aa		13.17	□□□□□ -0.3
HDAC6-231	ENST00000488905	COQ8A	Q8NI60	647 aa		13.17	□□□□□ -0.3
HDAC6-231	ENST00000488905	SLC35E1	Q96K37	410 aa		13.17	□□□□□ -0.3
HDAC6-231	ENST00000488905	LINC00052	Q96N35	136 aa		13.17	□□□□□ -0.3
HDAC6-231	ENST00000488905	SCP2D1	Q9UJQ7	156 aa		13.17	□□□□□ -0.3
HDAC6-231	ENST00000488905	NACA	E9PAV3	2078 aa		13.17	□□□□□ -0.3
HDAC6-231	ENST00000488905	IGHV3OR16-12	A0A075B7B8	117 aa		13.16	□□□□□ -0.3
HDAC6-231	ENST00000488905	ID1	P41134	155 aa		13.16	□□□□□ -0.3
HDAC6-231	ENST00000488905	ATP5I	P56385	69 aa	Predicted RBP	13.16	□□□□□ -0.3
HDAC6-231	ENST00000488905	LYZ	P61626	148 aa		13.16	□□□□□ -0.3
HDAC6-231	ENST00000488905	CLUHP3	Q96NS8	147 aa		13.16	□□□□□ -0.3
HDAC6-231	ENST00000488905	SCGB3A2	Q96PL1	93 aa		13.16	□□□□□ -0.3
HDAC6-231	ENST00000488905	MRPS26	Q9BYN8	205 aa	Known RBP	13.16	□□□□□ -0.3
HDAC6-231	ENST00000488905	CCDC59	Q9P031	241 aa	Known RBP	13.16	□□□□□ -0.3
HDAC6-231	ENST00000488905	RFNG	Q9Y644	331 aa		13.16	□□□□□ -0.3
HDAC6-231	ENST00000488905	TEX48	A0A1B0GUV7	120 aa		13.15	□□□□□ -0.3
HDAC6-231	ENST00000488905	ANXA3	P12429	323 aa		13.15	□□□□□ -0.3
HDAC6-231	ENST00000488905	AKR1C4	P17516	323 aa		13.15	□□□□□ -0.3
HDAC6-231	ENST00000488905	GPX4	P36969	197 aa	Predicted RBP	13.15	□□□□□ -0.3
HDAC6-231	ENST00000488905	SRPX	P78539	464 aa		13.15	□□□□□ -0.3
HDAC6-231	ENST00000488905	ZNF79	Q15937	498 aa		13.15	□□□□□ -0.3
HDAC6-231	ENST00000488905	C1orf194	Q5T5A4	169 aa		13.15	□□□□□ -0.3
HDAC6-231	ENST00000488905	OR1S1	Q8NH92	325 aa		13.15	□□□□□ -0.3
HDAC6-231	ENST00000488905	MCUB	Q9NWR8	336 aa		13.15	□□□□□ -0.3
HDAC6-231	ENST00000488905	PRSS29P	A6NIE9	313 aa		13.14	□□□□□ -0.31
HDAC6-231	ENST00000488905		M0R2N4	97 aa		13.14	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 107.8 ms