RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 LINC00299Q6ZSB3 139 aa10.26□□□□□ -0.77
SYNE1-226ENST00000488376 ZBTB8BQ8NAP8 495 aaPredicted RBP10.26□□□□□ -0.77
SYNE1-226ENST00000488376 GLMPQ8WWB7 406 aa10.26□□□□□ -0.77
SYNE1-226ENST00000488376 S100ZQ8WXG8 99 aa10.26□□□□□ -0.77
SYNE1-226ENST00000488376 CIB3Q96Q77 187 aaPredicted RBP10.26□□□□□ -0.77
SYNE1-226ENST00000488376 PTTG2Q9NZH5 202 aa10.26□□□□□ -0.77
SYNE1-226ENST00000488376 K7EQG2 157 aa10.25□□□□□ -0.77
SYNE1-226ENST00000488376 DNASE2O00115 360 aaPredicted RBP10.25□□□□□ -0.77
SYNE1-226ENST00000488376 BMI1P35226 326 aa10.25□□□□□ -0.77
SYNE1-226ENST00000488376 DEFB131AP59861 70 aa10.25□□□□□ -0.77
SYNE1-226ENST00000488376 RAB11AP62491 216 aa10.25□□□□□ -0.77
SYNE1-226ENST00000488376 ASAH1Q13510 395 aa10.25□□□□□ -0.77
SYNE1-226ENST00000488376 DEFB135Q30KP9 77 aa10.25□□□□□ -0.77
SYNE1-226ENST00000488376 CASC10Q5T4H9 136 aa10.25□□□□□ -0.77
SYNE1-226ENST00000488376 TMEM182Q6ZP80 229 aaPredicted RBP10.25□□□□□ -0.77
SYNE1-226ENST00000488376 DCANP1Q8TF63 244 aa10.25□□□□□ -0.77
SYNE1-226ENST00000488376 RNF125Q96EQ8 232 aa10.25□□□□□ -0.77
SYNE1-226ENST00000488376 PBDC1Q9BVG4 233 aa10.25□□□□□ -0.77
SYNE1-226ENST00000488376 TMEM231Q9H6L2 316 aa10.25□□□□□ -0.77
SYNE1-226ENST00000488376 PSENENQ9NZ42 101 aa10.25□□□□□ -0.77
SYNE1-226ENST00000488376 GSKIPQ9P0R6 139 aa10.25□□□□□ -0.77
SYNE1-226ENST00000488376 RCL1Q9Y2P8 373 aaKnown RBP10.25□□□□□ -0.77
SYNE1-226ENST00000488376 A0A1W2PS18 150 aa10.24□□□□□ -0.77
SYNE1-226ENST00000488376 PMS2P5A8MQ11 134 aa10.24□□□□□ -0.77
SYNE1-226ENST00000488376 C3orf84H3BNL1 204 aa10.24□□□□□ -0.77
SYNE1-226ENST00000488376 UPK1BO75841 260 aa10.24□□□□□ -0.77
SYNE1-226ENST00000488376 MBPP02686 304 aaPredicted RBP10.24□□□□□ -0.77
SYNE1-226ENST00000488376 H2AFB2P0C5Z0 115 aa10.24□□□□□ -0.77
SYNE1-226ENST00000488376 LYZP61626 148 aa10.24□□□□□ -0.77
SYNE1-226ENST00000488376 PAFAH1B2P68402 229 aa10.24□□□□□ -0.77
SYNE1-226ENST00000488376 ACOT7LQ6ZUV0 252 aa10.24□□□□□ -0.77
SYNE1-226ENST00000488376 THAP8Q8NA92 274 aa10.24□□□□□ -0.77
SYNE1-226ENST00000488376 ZNF431Q8TF32 576 aaPredicted RBP10.24□□□□□ -0.77
SYNE1-226ENST00000488376 STRAPQ9Y3F4 350 aaKnown RBP10.24□□□□□ -0.77
SYNE1-226ENST00000488376 TRAV2A0A0B4J234 112 aa10.23□□□□□ -0.77
SYNE1-226ENST00000488376 FAM240BA0A1B0GVZ2 78 aa10.23□□□□□ -0.77
SYNE1-226ENST00000488376 BUB3O43684 328 aa10.23□□□□□ -0.77
SYNE1-226ENST00000488376 CD5P06127 495 aa10.23□□□□□ -0.77
SYNE1-226ENST00000488376 ZNF688P0C7X2 276 aa10.23□□□□□ -0.77
SYNE1-226ENST00000488376 LYL1P12980 280 aa10.23□□□□□ -0.77
SYNE1-226ENST00000488376 GATA2P23769 480 aaPredicted RBP10.23□□□□□ -0.77
SYNE1-226ENST00000488376 EWSR1Q01844 656 aaKnown RBP eCLIP10.23□□□□□ -0.77
SYNE1-226ENST00000488376 OR8G2PQ6IF36 304 aa10.23□□□□□ -0.77
SYNE1-226ENST00000488376 NARS2Q96I59 477 aaKnown RBP10.23□□□□□ -0.77
SYNE1-226ENST00000488376 SMIM8Q96KF7 97 aa10.23□□□□□ -0.77
SYNE1-226ENST00000488376 TRGV9Q99603 122 aa10.23□□□□□ -0.77
SYNE1-226ENST00000488376 KMT2CQ8NEZ4 4911 aaKnown RBP10.23□□□□□ -0.77
SYNE1-226ENST00000488376 KNCNA6PVL3 124 aa10.22□□□□□ -0.77
SYNE1-226ENST00000488376 FAM25EA8MYX2 175 aa10.22□□□□□ -0.77
SYNE1-226ENST00000488376 METTL15P1P0C7V9 234 aa10.22□□□□□ -0.77
SYNE1-226ENST00000488376 EIF2B2P49770 351 aaKnown RBP10.22□□□□□ -0.77
SYNE1-226ENST00000488376 APOC4P55056 127 aa10.22□□□□□ -0.77
SYNE1-226ENST00000488376 RRAS2P62070 204 aaPredicted RBP10.22□□□□□ -0.77
SYNE1-226ENST00000488376 RPP30P78346 268 aaKnown RBP10.22□□□□□ -0.77
SYNE1-226ENST00000488376 ARL16Q0P5N6 197 aa10.22□□□□□ -0.77
SYNE1-226ENST00000488376 ZNF846Q147U1 533 aa10.22□□□□□ -0.77
SYNE1-226ENST00000488376 GRAMD2BQ96HH9 432 aa10.22□□□□□ -0.77
SYNE1-226ENST00000488376 WDR12Q9GZL7 423 aaKnown RBP10.22□□□□□ -0.77
SYNE1-226ENST00000488376 DNAH7Q8WXX0 4024 aa10.22□□□□□ -0.77
SYNE1-226ENST00000488376 KIR2DL5BA0A0G2JN68 375 aa10.21□□□□□ -0.77
SYNE1-226ENST00000488376 KIR2DL5BA0A0G2JPC4 375 aa10.21□□□□□ -0.77
SYNE1-226ENST00000488376 C7orf66A4D0T2 115 aa10.21□□□□□ -0.77
SYNE1-226ENST00000488376 SPRY2O43597 315 aa10.21□□□□□ -0.77
SYNE1-226ENST00000488376 AKR1C1Q04828 323 aa10.21□□□□□ -0.77
SYNE1-226ENST00000488376 MZT2BQ6NZ67 158 aa10.21□□□□□ -0.77
SYNE1-226ENST00000488376 TMEM14EPQ6UXP3 125 aa10.21□□□□□ -0.77
SYNE1-226ENST00000488376 SIGLEC15Q6ZMC9 328 aa10.21□□□□□ -0.77
SYNE1-226ENST00000488376 Q6ZWC4 215 aa10.21□□□□□ -0.77
SYNE1-226ENST00000488376 KIR2DL5AQ8N109 375 aa10.21□□□□□ -0.77
SYNE1-226ENST00000488376 C12orf45Q8N5I9 185 aaPredicted RBP10.21□□□□□ -0.77
SYNE1-226ENST00000488376 KIR2DL5BQ8NHK3 375 aa10.21□□□□□ -0.77
SYNE1-226ENST00000488376 SMCO3A2RU48 225 aa10.2□□□□□ -0.78
SYNE1-226ENST00000488376 HELTA6NFD8 242 aa10.2□□□□□ -0.78
SYNE1-226ENST00000488376 SNRPGP15A8MWD9 76 aa10.2□□□□□ -0.78
SYNE1-226ENST00000488376 GIG44P09565 113 aaPredicted RBP10.2□□□□□ -0.78
SYNE1-226ENST00000488376 DEFB1P60022 68 aa10.2□□□□□ -0.78
SYNE1-226ENST00000488376 PSMG4Q5JS54 123 aa10.2□□□□□ -0.78
SYNE1-226ENST00000488376 NRARPQ7Z6K4 114 aa10.2□□□□□ -0.78
SYNE1-226ENST00000488376 RNF183Q96D59 192 aa10.2□□□□□ -0.78
SYNE1-226ENST00000488376 C11orf1Q9H5F2 150 aa10.2□□□□□ -0.78
SYNE1-226ENST00000488376 A0A0J9YWU9 116 aa10.19□□□□□ -0.78
SYNE1-226ENST00000488376 C5orf51A6NDU8 294 aa10.19□□□□□ -0.78
SYNE1-226ENST00000488376 K7EPK0 472 aa10.19□□□□□ -0.78
SYNE1-226ENST00000488376 CMC4P56277 68 aaPredicted RBP10.19□□□□□ -0.78
SYNE1-226ENST00000488376 TMEM144Q7Z5S9 345 aa10.19□□□□□ -0.78
SYNE1-226ENST00000488376 C17orf77Q96MU5 243 aa10.19□□□□□ -0.78
SYNE1-226ENST00000488376 RAB40CQ96S21 281 aa10.19□□□□□ -0.78
SYNE1-226ENST00000488376 CSTL1Q9H114 145 aa10.19□□□□□ -0.78
SYNE1-226ENST00000488376 NRN1Q9NPD7 142 aa10.19□□□□□ -0.78
SYNE1-226ENST00000488376 LSM5Q9Y4Y9 91 aaKnown RBP10.19□□□□□ -0.78
SYNE1-226ENST00000488376 UBE2CO00762 179 aa10.18□□□□□ -0.78
SYNE1-226ENST00000488376 TSC22D2O75157 780 aa10.18□□□□□ -0.78
SYNE1-226ENST00000488376 CA1P00915 261 aaPredicted RBP10.18□□□□□ -0.78
SYNE1-226ENST00000488376 TAS2R30P59541 319 aa10.18□□□□□ -0.78
SYNE1-226ENST00000488376 IL15RAQ13261 267 aa10.18□□□□□ -0.78
SYNE1-226ENST00000488376 ACTL10Q5JWF8 245 aa10.18□□□□□ -0.78
SYNE1-226ENST00000488376 TRPT1Q86TN4 253 aaKnown RBP10.18□□□□□ -0.78
SYNE1-226ENST00000488376 ENKURQ8TC29 256 aa10.18□□□□□ -0.78
SYNE1-226ENST00000488376 DOK5Q9P104 306 aa10.18□□□□□ -0.78
SYNE1-226ENST00000488376 TP53TG1Q9Y2A0 90 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms