RNA–Protein interactions for RNA: ENST00000488325.5

HLA-DOB-209, Transcript of major histocompatibility complex, class II, DO beta, humanhuman

Gene HLA-DOB, Length 1,188 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOB-209ENST00000488325 SEC14L6B5MCN3 397 aa9.4□□□□□ -0.9
HLA-DOB-209ENST00000488325 G3V318 75 aa9.4□□□□□ -0.9
HLA-DOB-209ENST00000488325 OR2J3O76001 311 aa9.4□□□□□ -0.9
HLA-DOB-209ENST00000488325 BRI3O95415 125 aa9.4□□□□□ -0.9
HLA-DOB-209ENST00000488325 IGHV3-48P01763 117 aa9.4□□□□□ -0.9
HLA-DOB-209ENST00000488325 FCGR2BP31994 310 aaPredicted RBP9.4□□□□□ -0.9
HLA-DOB-209ENST00000488325 CDC34P49427 236 aaPredicted RBP9.4□□□□□ -0.9
HLA-DOB-209ENST00000488325 KRTAP10-3P60369 221 aa9.4□□□□□ -0.9
HLA-DOB-209ENST00000488325 RHOBP62745 196 aa9.4□□□□□ -0.9
HLA-DOB-209ENST00000488325 BLCAPP62952 87 aa9.4□□□□□ -0.9
HLA-DOB-209ENST00000488325 C19orf54Q5BKX5 351 aa9.4□□□□□ -0.9
HLA-DOB-209ENST00000488325 UQCC3Q6UW78 93 aa9.4□□□□□ -0.9
HLA-DOB-209ENST00000488325 FAM223AQ8IWN6 122 aa9.4□□□□□ -0.9
HLA-DOB-209ENST00000488325 EIF4E3Q8N5X7 224 aaKnown RBP9.4□□□□□ -0.9
HLA-DOB-209ENST00000488325 NECAP1Q8NC96 275 aa9.4□□□□□ -0.9
HLA-DOB-209ENST00000488325 OR1L4Q8NGR5 311 aa9.4□□□□□ -0.9
HLA-DOB-209ENST00000488325 SFT2D1Q8WV19 159 aa9.4□□□□□ -0.9
HLA-DOB-209ENST00000488325 CITED4Q96RK1 184 aa9.4□□□□□ -0.9
HLA-DOB-209ENST00000488325 PBDC1Q9BVG4 233 aa9.4□□□□□ -0.9
HLA-DOB-209ENST00000488325 MAP1LC3BQ9GZQ8 125 aa9.4□□□□□ -0.9
HLA-DOB-209ENST00000488325 MRPL36Q9P0J6 103 aaKnown RBP9.4□□□□□ -0.9
HLA-DOB-209ENST00000488325 IGKV1D-37A0A075B6S9 117 aa9.39□□□□□ -0.91
HLA-DOB-209ENST00000488325 TRBV9A0A0B4J1U6 114 aa9.39□□□□□ -0.91
HLA-DOB-209ENST00000488325 GNG7O60262 68 aa9.39□□□□□ -0.91
HLA-DOB-209ENST00000488325 YIF1AO95070 293 aa9.39□□□□□ -0.91
HLA-DOB-209ENST00000488325 NDUFB8O95169 186 aa9.39□□□□□ -0.91
HLA-DOB-209ENST00000488325 LINC00869P0C866 280 aa9.39□□□□□ -0.91
HLA-DOB-209ENST00000488325 IGLC1P0CG04 106 aa9.39□□□□□ -0.91
HLA-DOB-209ENST00000488325 RHOGP84095 191 aa9.39□□□□□ -0.91
HLA-DOB-209ENST00000488325 Q56UQ5 140 aa9.39□□□□□ -0.91
HLA-DOB-209ENST00000488325 LCN15Q6UWW0 184 aa9.39□□□□□ -0.91
HLA-DOB-209ENST00000488325 RPP25LQ8N5L8 163 aaKnown RBP9.39□□□□□ -0.91
HLA-DOB-209ENST00000488325 OR4F5Q8NH21 305 aa9.39□□□□□ -0.91
HLA-DOB-209ENST00000488325 PFDN5Q99471 154 aa9.39□□□□□ -0.91
HLA-DOB-209ENST00000488325 SLC25A22Q9H936 323 aa9.39□□□□□ -0.91
HLA-DOB-209ENST00000488325 COX7A2P2O60397 106 aa9.38□□□□□ -0.91
HLA-DOB-209ENST00000488325 IFNA1P01562 189 aa9.38□□□□□ -0.91
HLA-DOB-209ENST00000488325 ATP5G2Q06055 141 aa9.38□□□□□ -0.91
HLA-DOB-209ENST00000488325 ZNF726P1Q15940 193 aa9.38□□□□□ -0.91
HLA-DOB-209ENST00000488325 SAMD5Q5TGI4 173 aa9.38□□□□□ -0.91
HLA-DOB-209ENST00000488325 SPSB3Q6PJ21 355 aa9.38□□□□□ -0.91
HLA-DOB-209ENST00000488325 GATAD1Q8WUU5 269 aa9.38□□□□□ -0.91
HLA-DOB-209ENST00000488325 RAB24Q969Q5 203 aa9.38□□□□□ -0.91
HLA-DOB-209ENST00000488325 EEF1AKMT3Q96AZ1 226 aa9.38□□□□□ -0.91
HLA-DOB-209ENST00000488325 ATP6V0BQ99437 205 aa9.38□□□□□ -0.91
HLA-DOB-209ENST00000488325 MRPL32Q9BYC8 188 aaKnown RBP9.38□□□□□ -0.91
HLA-DOB-209ENST00000488325 TRBV7-1A0A0A6YYK4 115 aa9.37□□□□□ -0.91
HLA-DOB-209ENST00000488325 A0A1B0GV50 99 aa9.37□□□□□ -0.91
HLA-DOB-209ENST00000488325 TRGV3P03979 118 aa9.37□□□□□ -0.91
HLA-DOB-209ENST00000488325 OR5G3P0C626 314 aa9.37□□□□□ -0.91
HLA-DOB-209ENST00000488325 PPT1P50897 306 aa9.37□□□□□ -0.91
HLA-DOB-209ENST00000488325 TAS2R45P59539 299 aa9.37□□□□□ -0.91
HLA-DOB-209ENST00000488325 YPEL3P61236 119 aaPredicted RBP9.37□□□□□ -0.91
HLA-DOB-209ENST00000488325 ZNF90Q03938 601 aa9.37□□□□□ -0.91
HLA-DOB-209ENST00000488325 PEA15Q15121 130 aa9.37□□□□□ -0.91
HLA-DOB-209ENST00000488325 C15orf32Q32M92 178 aa9.37□□□□□ -0.91
HLA-DOB-209ENST00000488325 S100A7AQ86SG5 101 aa9.37□□□□□ -0.91
HLA-DOB-209ENST00000488325 USMG5Q96IX5 58 aa9.37□□□□□ -0.91
HLA-DOB-209ENST00000488325 WWC2-AS2Q96NR7 200 aa9.37□□□□□ -0.91
HLA-DOB-209ENST00000488325 LINC00527Q9UJ94 153 aa9.37□□□□□ -0.91
HLA-DOB-209ENST00000488325 FUT9Q9Y231 359 aa9.37□□□□□ -0.91
HLA-DOB-209ENST00000488325 ELOA3CA0A087WX78 387 aaPredicted RBP9.36□□□□□ -0.91
HLA-DOB-209ENST00000488325 CLPSL1A2RUU4 121 aa9.36□□□□□ -0.91
HLA-DOB-209ENST00000488325 TOMM40O96008 361 aa9.36□□□□□ -0.91
HLA-DOB-209ENST00000488325 RD3LP0DJH9 198 aa9.36□□□□□ -0.91
HLA-DOB-209ENST00000488325 GATA2P23769 480 aaPredicted RBP9.36□□□□□ -0.91
HLA-DOB-209ENST00000488325 PPIFP30405 207 aaKnown RBP9.36□□□□□ -0.91
HLA-DOB-209ENST00000488325 TAGLN2P37802 199 aaKnown RBP9.36□□□□□ -0.91
HLA-DOB-209ENST00000488325 TPPP2P59282 170 aa9.36□□□□□ -0.91
HLA-DOB-209ENST00000488325 PLP1P60201 277 aa9.36□□□□□ -0.91
HLA-DOB-209ENST00000488325 SLC35B1P78383 322 aa9.36□□□□□ -0.91
HLA-DOB-209ENST00000488325 PMS2P11Q13670 270 aa9.36□□□□□ -0.91
HLA-DOB-209ENST00000488325 GUK1Q16774 197 aa9.36□□□□□ -0.91
HLA-DOB-209ENST00000488325 TIGITQ495A1 244 aa9.36□□□□□ -0.91
HLA-DOB-209ENST00000488325 GCSAMLQ5JQS6 135 aa9.36□□□□□ -0.91
HLA-DOB-209ENST00000488325 FAM78BQ5VT40 261 aa9.36□□□□□ -0.91
HLA-DOB-209ENST00000488325 OR51G1Q8NGK1 321 aa9.36□□□□□ -0.91
HLA-DOB-209ENST00000488325 ZNF502Q8TBZ5 544 aa9.36□□□□□ -0.91
HLA-DOB-209ENST00000488325 FAM210AQ96ND0 272 aa9.36□□□□□ -0.91
HLA-DOB-209ENST00000488325 MS4A10Q96PG2 267 aa9.36□□□□□ -0.91
HLA-DOB-209ENST00000488325 SMDT1Q9H4I9 107 aa9.36□□□□□ -0.91
HLA-DOB-209ENST00000488325 ZNF702PQ9H963 129 aa9.36□□□□□ -0.91
HLA-DOB-209ENST00000488325 DNAJC4Q9NNZ3 241 aa9.36□□□□□ -0.91
HLA-DOB-209ENST00000488325 TREM1Q9NP99 234 aa9.36□□□□□ -0.91
HLA-DOB-209ENST00000488325 A0A0G2JLM5 398 aa9.35□□□□□ -0.91
HLA-DOB-209ENST00000488325 FAM181BA6NEQ2 426 aa9.35□□□□□ -0.91
HLA-DOB-209ENST00000488325 I3L521 148 aa9.35□□□□□ -0.91
HLA-DOB-209ENST00000488325 NUPL2O15504 423 aaKnown RBP9.35□□□□□ -0.91
HLA-DOB-209ENST00000488325 HYPMO75409 117 aa9.35□□□□□ -0.91
HLA-DOB-209ENST00000488325 CXorf1O96002 111 aa9.35□□□□□ -0.91
HLA-DOB-209ENST00000488325 IGKV1-17P01599 117 aa9.35□□□□□ -0.91
HLA-DOB-209ENST00000488325 STAG3L2P0CL84 134 aa9.35□□□□□ -0.91
HLA-DOB-209ENST00000488325 STAG3L3P0CL85 134 aa9.35□□□□□ -0.91
HLA-DOB-209ENST00000488325 PF4V1P10720 104 aa9.35□□□□□ -0.91
HLA-DOB-209ENST00000488325 S100A7P31151 101 aa9.35□□□□□ -0.91
HLA-DOB-209ENST00000488325 PSMB3P49720 205 aa9.35□□□□□ -0.91
HLA-DOB-209ENST00000488325 FGF8P55075 233 aaPredicted RBP9.35□□□□□ -0.91
HLA-DOB-209ENST00000488325 RPL15P61313 204 aaKnown RBP9.35□□□□□ -0.91
HLA-DOB-209ENST00000488325 CFHR3Q02985 330 aa9.35□□□□□ -0.91
HLA-DOB-209ENST00000488325 KHDC3LQ587J8 217 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms