RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 AKR1C1Q04828 323 aa11.04□□□□□ -0.64
USP4-212ENST00000486549 OR2F1Q13607 317 aa11.04□□□□□ -0.64
USP4-212ENST00000486549 USF2Q15853 346 aaPredicted RBP11.04□□□□□ -0.64
USP4-212ENST00000486549 LILRB2Q8N423 598 aa11.04□□□□□ -0.64
USP4-212ENST00000486549 GBGT1Q8N5D6 347 aa11.04□□□□□ -0.64
USP4-212ENST00000486549 MARVELD1Q9BSK0 173 aa11.04□□□□□ -0.64
USP4-212ENST00000486549 PBDC1Q9BVG4 233 aa11.04□□□□□ -0.64
USP4-212ENST00000486549 TMEM231Q9H6L2 316 aa11.04□□□□□ -0.64
USP4-212ENST00000486549 A0A1W2PS18 150 aa11.03□□□□□ -0.64
USP4-212ENST00000486549 C7orf66A4D0T2 115 aa11.03□□□□□ -0.64
USP4-212ENST00000486549 SNRPGP15A8MWD9 76 aa11.03□□□□□ -0.64
USP4-212ENST00000486549 A8MZ25 164 aa11.03□□□□□ -0.64
USP4-212ENST00000486549 TSC22D2O75157 780 aa11.03□□□□□ -0.64
USP4-212ENST00000486549 SIX6O95475 246 aa11.03□□□□□ -0.64
USP4-212ENST00000486549 HNRNPCP07910 306 aaKnown RBP eCLIP11.03□□□□□ -0.64
USP4-212ENST00000486549 CRYBB3P26998 211 aa11.03□□□□□ -0.64
USP4-212ENST00000486549 BCAP31P51572 246 aa11.03□□□□□ -0.64
USP4-212ENST00000486549 RRAS2P62070 204 aaPredicted RBP11.03□□□□□ -0.64
USP4-212ENST00000486549 TMEM14EPQ6UXP3 125 aa11.03□□□□□ -0.64
USP4-212ENST00000486549 OR51G1Q8NGK1 321 aa11.03□□□□□ -0.64
USP4-212ENST00000486549 RNF125Q96EQ8 232 aa11.03□□□□□ -0.64
USP4-212ENST00000486549 IGKV1OR2-108A0A075B7D4 117 aa11.02□□□□□ -0.65
USP4-212ENST00000486549 PMS2P5A8MQ11 134 aa11.02□□□□□ -0.65
USP4-212ENST00000486549 FABP1P07148 127 aa11.02□□□□□ -0.65
USP4-212ENST00000486549 P2RY1P47900 373 aa11.02□□□□□ -0.65
USP4-212ENST00000486549 TAS2R30P59541 319 aa11.02□□□□□ -0.65
USP4-212ENST00000486549 LYZP61626 148 aa11.02□□□□□ -0.65
USP4-212ENST00000486549 FAM90A2PQ658T7 463 aa11.02□□□□□ -0.65
USP4-212ENST00000486549 WFDC3Q8IUB2 231 aa11.02□□□□□ -0.65
USP4-212ENST00000486549 THAP8Q8NA92 274 aa11.02□□□□□ -0.65
USP4-212ENST00000486549 GRAMD2BQ96HH9 432 aa11.02□□□□□ -0.65
USP4-212ENST00000486549 TRGV9Q99603 122 aa11.02□□□□□ -0.65
USP4-212ENST00000486549 RABAC1Q9UI14 185 aa11.02□□□□□ -0.65
USP4-212ENST00000486549 DNASE2O00115 360 aaPredicted RBP11.01□□□□□ -0.65
USP4-212ENST00000486549 SSNA1O43805 119 aa11.01□□□□□ -0.65
USP4-212ENST00000486549 PVALBP20472 110 aaPredicted RBP11.01□□□□□ -0.65
USP4-212ENST00000486549 CAV2P51636 162 aa11.01□□□□□ -0.65
USP4-212ENST00000486549 RAB32Q13637 225 aa11.01□□□□□ -0.65
USP4-212ENST00000486549 OR10P1Q8NGE3 313 aa11.01□□□□□ -0.65
USP4-212ENST00000486549 ZMAT4Q9H898 229 aa11.01□□□□□ -0.65
USP4-212ENST00000486549 CD5P06127 495 aa11□□□□□ -0.65
USP4-212ENST00000486549 PAFAH1B2P68402 229 aa11□□□□□ -0.65
USP4-212ENST00000486549 DLK1P80370 383 aa11□□□□□ -0.65
USP4-212ENST00000486549 HAGHQ16775 308 aa11□□□□□ -0.65
USP4-212ENST00000486549 ODF3L2Q3SX64 289 aa11□□□□□ -0.65
USP4-212ENST00000486549 STXBP6Q8NFX7 210 aa11□□□□□ -0.65
USP4-212ENST00000486549 MS4A6AQ9H2W1 248 aa11□□□□□ -0.65
USP4-212ENST00000486549 MGAT4CQ9UBM8 478 aa11□□□□□ -0.65
USP4-212ENST00000486549 U3KQE9 123 aa11□□□□□ -0.65
USP4-212ENST00000486549 RBMY1BA6NDE4 496 aaKnown RBP10.99□□□□□ -0.65
USP4-212ENST00000486549 RBMY1EA6NEQ0 496 aaKnown RBP10.99□□□□□ -0.65
USP4-212ENST00000486549 FAM24AA6NFZ4 105 aa10.99□□□□□ -0.65
USP4-212ENST00000486549 PTTG1O95997 202 aa10.99□□□□□ -0.65
USP4-212ENST00000486549 RBMY1DP0C7P1 496 aaKnown RBP10.99□□□□□ -0.65
USP4-212ENST00000486549 GATA2P23769 480 aaPredicted RBP10.99□□□□□ -0.65
USP4-212ENST00000486549 EIF2B2P49770 351 aaKnown RBP10.99□□□□□ -0.65
USP4-212ENST00000486549 ARL16Q0P5N6 197 aa10.99□□□□□ -0.65
USP4-212ENST00000486549 IL15RAQ13261 267 aa10.99□□□□□ -0.65
USP4-212ENST00000486549 LRRC37A5PQ49AS3 106 aa10.99□□□□□ -0.65
USP4-212ENST00000486549 C16orf54Q6UWD8 224 aa10.99□□□□□ -0.65
USP4-212ENST00000486549 TMEM144Q7Z5S9 345 aa10.99□□□□□ -0.65
USP4-212ENST00000486549 PPP1R14BQ96C90 147 aa10.99□□□□□ -0.65
USP4-212ENST00000486549 CITED4Q96RK1 184 aa10.99□□□□□ -0.65
USP4-212ENST00000486549 C11orf1Q9H5F2 150 aa10.99□□□□□ -0.65
USP4-212ENST00000486549 CST7O76096 145 aa10.98□□□□□ -0.65
USP4-212ENST00000486549 TMEM182Q6ZP80 229 aaPredicted RBP10.98□□□□□ -0.65
USP4-212ENST00000486549 APRG1Q8IVJ8 170 aa10.98□□□□□ -0.65
USP4-212ENST00000486549 BPIFCQ8NFQ6 507 aa10.98□□□□□ -0.65
USP4-212ENST00000486549 GLMPQ8WWB7 406 aa10.98□□□□□ -0.65
USP4-212ENST00000486549 HUWE1Q7Z6Z7 4374 aaKnown RBP10.97□□□□□ -0.65
USP4-212ENST00000486549 HELTA6NFD8 242 aa10.97□□□□□ -0.65
USP4-212ENST00000486549 BUB3O43684 328 aa10.97□□□□□ -0.65
USP4-212ENST00000486549 SLC38A11Q08AI6 406 aa10.97□□□□□ -0.65
USP4-212ENST00000486549 ZNF124Q15973 351 aa10.97□□□□□ -0.65
USP4-212ENST00000486549 LINC00322Q6ZN03 302 aaPredicted RBP10.97□□□□□ -0.65
USP4-212ENST00000486549 CYP2G1PQ6ZSU1 146 aa10.97□□□□□ -0.65
USP4-212ENST00000486549 FAM24BQ8N5W8 94 aa10.97□□□□□ -0.65
USP4-212ENST00000486549 TMEM217Q8N7C4 229 aa10.97□□□□□ -0.65
USP4-212ENST00000486549 RCHY1Q96PM5 261 aa10.97□□□□□ -0.65
USP4-212ENST00000486549 TM2D3Q9BRN9 247 aa10.97□□□□□ -0.65
USP4-212ENST00000486549 NMES1Q9C002 83 aa10.97□□□□□ -0.65
USP4-212ENST00000486549 MAP6D1Q9H9H5 199 aa10.97□□□□□ -0.65
USP4-212ENST00000486549 NPVFQ9HCQ7 196 aa10.97□□□□□ -0.65
USP4-212ENST00000486549 LYRM2Q9NU23 88 aaPredicted RBP10.97□□□□□ -0.65
USP4-212ENST00000486549 PFDN2Q9UHV9 154 aa10.97□□□□□ -0.65
USP4-212ENST00000486549 ALG5Q9Y673 324 aa10.97□□□□□ -0.65
USP4-212ENST00000486549 TENM3Q9P273 2699 aa10.97□□□□□ -0.65
USP4-212ENST00000486549 LOC102724200A0A096LPH7 203 aaPredicted RBP10.96□□□□□ -0.65
USP4-212ENST00000486549 IGSF23A1L1A6 192 aa10.96□□□□□ -0.65
USP4-212ENST00000486549 C3orf84H3BNL1 204 aa10.96□□□□□ -0.65
USP4-212ENST00000486549 ORM2P19652 201 aa10.96□□□□□ -0.65
USP4-212ENST00000486549 NUP62P37198 522 aaPredicted RBP10.96□□□□□ -0.65
USP4-212ENST00000486549 H2BFSP57053 126 aa10.96□□□□□ -0.65
USP4-212ENST00000486549 SIGLEC15Q6ZMC9 328 aa10.96□□□□□ -0.65
USP4-212ENST00000486549 OR1B1Q8NGR6 318 aa10.96□□□□□ -0.65
USP4-212ENST00000486549 SPATA25Q9BR10 227 aa10.96□□□□□ -0.65
USP4-212ENST00000486549 GGTLC1Q9BX51 225 aa10.96□□□□□ -0.65
USP4-212ENST00000486549 RETNQ9HD89 108 aa10.96□□□□□ -0.65
USP4-212ENST00000486549 DOK5Q9P104 306 aa10.96□□□□□ -0.65
USP4-212ENST00000486549 TRAV2A0A0B4J234 112 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms