RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 SMIM23A6NLE4 172 aa0.21□□□□□ -2.38
VPS50-216ENST00000484954 C1orf196B1AJZ1 125 aa0.21□□□□□ -2.38
VPS50-216ENST00000484954 CLDN25C9JDP6 229 aa0.21□□□□□ -2.38
VPS50-216ENST00000484954 CTXN2P0C2S0 81 aa0.21□□□□□ -2.38
VPS50-216ENST00000484954 ROMO1P60602 79 aa0.21□□□□□ -2.38
VPS50-216ENST00000484954 MPV17LQ2QL34 196 aa0.21□□□□□ -2.38
VPS50-216ENST00000484954 SPRNQ5BIV9 151 aa0.21□□□□□ -2.38
VPS50-216ENST00000484954 KRTAP26-1Q6PEX3 210 aa0.21□□□□□ -2.38
VPS50-216ENST00000484954 KRT222Q8N1A0 295 aa0.21□□□□□ -2.38
VPS50-216ENST00000484954 OR11H6Q8NGC7 330 aa0.21□□□□□ -2.38
VPS50-216ENST00000484954 OR51A2Q8NGJ7 313 aa0.21□□□□□ -2.38
VPS50-216ENST00000484954 PATE1Q8WXA2 126 aa0.21□□□□□ -2.38
VPS50-216ENST00000484954 SLAMF6Q96DU3 332 aa0.21□□□□□ -2.38
VPS50-216ENST00000484954 AMELYQ99218 206 aa0.21□□□□□ -2.38
VPS50-216ENST00000484954 PRADC1Q9BSG0 188 aa0.21□□□□□ -2.38
VPS50-216ENST00000484954 GLTPQ9NZD2 209 aa0.21□□□□□ -2.38
VPS50-216ENST00000484954 SLC22A13Q9Y226 551 aa0.21□□□□□ -2.38
VPS50-216ENST00000484954 SLC35A3Q9Y2D2 325 aa0.21□□□□□ -2.38
VPS50-216ENST00000484954 NAV2Q8IVL1 2488 aa0.21□□□□□ -2.38
VPS50-216ENST00000484954 TNRC6BQ9UPQ9 1833 aaKnown RBP0.2□□□□□ -2.38
VPS50-216ENST00000484954 MYO3BQ8WXR4 1341 aa0.2□□□□□ -2.38
VPS50-216ENST00000484954 COL6A3P12111 3177 aa0.2□□□□□ -2.38
VPS50-216ENST00000484954 M0R378 163 aa0.2□□□□□ -2.38
VPS50-216ENST00000484954 OR7C1O76099 320 aaPredicted RBP0.2□□□□□ -2.38
VPS50-216ENST00000484954 PROSCO94903 275 aa0.2□□□□□ -2.38
VPS50-216ENST00000484954 GADD45GO95257 159 aa0.2□□□□□ -2.38
VPS50-216ENST00000484954 DHFRP00374 187 aa0.2□□□□□ -2.38
VPS50-216ENST00000484954 CYBAP13498 195 aa0.2□□□□□ -2.38
VPS50-216ENST00000484954 SERPINB9P50453 376 aa0.2□□□□□ -2.38
VPS50-216ENST00000484954 CEBPGP53567 150 aa0.2□□□□□ -2.38
VPS50-216ENST00000484954 AP3S2P59780 193 aa0.2□□□□□ -2.38
VPS50-216ENST00000484954 PDZD9Q8IXQ8 264 aa0.2□□□□□ -2.38
VPS50-216ENST00000484954 SIGMAR1Q99720 223 aa0.2□□□□□ -2.38
VPS50-216ENST00000484954 CMSS1Q9BQ75 279 aaKnown RBP0.2□□□□□ -2.38
VPS50-216ENST00000484954 TMEM70Q9BUB7 260 aa0.2□□□□□ -2.38
VPS50-216ENST00000484954 TRIM4Q9C037 500 aa0.2□□□□□ -2.38
VPS50-216ENST00000484954 COL1A1P02452 1464 aaPredicted RBP0.2□□□□□ -2.38
VPS50-216ENST00000484954 CCDC88AQ3V6T2 1871 aa0.19□□□□□ -2.38
VPS50-216ENST00000484954 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.19□□□□□ -2.38
VPS50-216ENST00000484954 TRAV4A0A0B4J268 109 aa0.19□□□□□ -2.38
VPS50-216ENST00000484954 TRBV6-4A0A1B0GX49 114 aa0.19□□□□□ -2.38
VPS50-216ENST00000484954 TCRBV4S1A1TA0A5B7 111 aa0.19□□□□□ -2.38
VPS50-216ENST00000484954 FAM159BA6NKW6 160 aa0.19□□□□□ -2.38
VPS50-216ENST00000484954 TMEM114B3SHH9 223 aa0.19□□□□□ -2.38
VPS50-216ENST00000484954 CYB5BO43169 146 aa0.19□□□□□ -2.38
VPS50-216ENST00000484954 NUPR1O60356 82 aa0.19□□□□□ -2.38
VPS50-216ENST00000484954 KLF7O75840 302 aaPredicted RBP0.19□□□□□ -2.38
VPS50-216ENST00000484954 C1QBP02746 253 aa0.19□□□□□ -2.38
VPS50-216ENST00000484954 ATP5G3P48201 142 aa0.19□□□□□ -2.38
VPS50-216ENST00000484954 EFNA4P52798 201 aa0.19□□□□□ -2.38
VPS50-216ENST00000484954 EIF5AP63241 154 aaKnown RBP0.19□□□□□ -2.38
VPS50-216ENST00000484954 PSG9Q00887 426 aa0.19□□□□□ -2.38
VPS50-216ENST00000484954 RRN3P1Q2M238 152 aa0.19□□□□□ -2.38
VPS50-216ENST00000484954 GRINAQ7Z429 371 aa0.19□□□□□ -2.38
VPS50-216ENST00000484954 OR2T35Q8NGX2 323 aa0.19□□□□□ -2.38
VPS50-216ENST00000484954 C4orf3Q8WVX3 66 aa0.19□□□□□ -2.38
VPS50-216ENST00000484954 C6orf62Q9GZU0 229 aaPredicted RBP0.19□□□□□ -2.38
VPS50-216ENST00000484954 TLNRD1Q9H1K6 362 aa0.19□□□□□ -2.38
VPS50-216ENST00000484954 C14orf132Q9NPU4 83 aa0.19□□□□□ -2.38
VPS50-216ENST00000484954 RASL12Q9NYN1 266 aa0.19□□□□□ -2.38
VPS50-216ENST00000484954 PIK3C2GO75747 1445 aa0.19□□□□□ -2.38
VPS50-216ENST00000484954 MED1Q15648 1581 aaPredicted RBP0.19□□□□□ -2.38
VPS50-216ENST00000484954 ANAPC1Q9H1A4 1944 aa0.19□□□□□ -2.38
VPS50-216ENST00000484954 TNRC6AQ8NDV7 1962 aaKnown RBP0.18□□□□□ -2.38
VPS50-216ENST00000484954 TRBV19A0A075B6N1 114 aa0.18□□□□□ -2.38
VPS50-216ENST00000484954 IGHV1-58A0A0C4DH39 117 aa0.18□□□□□ -2.38
VPS50-216ENST00000484954 HOXA6P31267 233 aa0.18□□□□□ -2.38
VPS50-216ENST00000484954 PIGPP57054 158 aa0.18□□□□□ -2.38
VPS50-216ENST00000484954 EXOC3-AS1Q8N2X6 119 aa0.18□□□□□ -2.38
VPS50-216ENST00000484954 LINC00301Q8NCQ3 95 aa0.18□□□□□ -2.38
VPS50-216ENST00000484954 SLC30A7Q8NEW0 376 aa0.18□□□□□ -2.38
VPS50-216ENST00000484954 OR10K1Q8NGX5 313 aa0.18□□□□□ -2.38
VPS50-216ENST00000484954 OR2T10Q8NGZ9 312 aa0.18□□□□□ -2.38
VPS50-216ENST00000484954 TEX47Q8TBZ9 253 aa0.18□□□□□ -2.38
VPS50-216ENST00000484954 FAM172AQ8WUF8 416 aa0.18□□□□□ -2.38
VPS50-216ENST00000484954 GPER1Q99527 375 aa0.18□□□□□ -2.38
VPS50-216ENST00000484954 TAS2R7Q9NYW3 318 aa0.18□□□□□ -2.38
VPS50-216ENST00000484954 ZNF106Q9H2Y7 1883 aaKnown RBP0.18□□□□□ -2.38
VPS50-216ENST00000484954 SNRNP200O75643 2136 aaKnown RBP0.17□□□□□ -2.38
VPS50-216ENST00000484954 TLCD2A6NGC4 264 aa0.17□□□□□ -2.38
VPS50-216ENST00000484954 E7EUB6 86 aa0.17□□□□□ -2.38
VPS50-216ENST00000484954 J3QRK9 145 aa0.17□□□□□ -2.38
VPS50-216ENST00000484954 TAX1BP3O14907 124 aa0.17□□□□□ -2.38
VPS50-216ENST00000484954 TIMM17BO60830 172 aa0.17□□□□□ -2.38
VPS50-216ENST00000484954 IGLV1-51P01701 117 aa0.17□□□□□ -2.38
VPS50-216ENST00000484954 CST2P09228 141 aa0.17□□□□□ -2.38
VPS50-216ENST00000484954 ERP29P30040 261 aaKnown RBP0.17□□□□□ -2.38
VPS50-216ENST00000484954 SRP14P37108 136 aaKnown RBP0.17□□□□□ -2.38
VPS50-216ENST00000484954 ANP32AP39687 249 aaKnown RBP0.17□□□□□ -2.38
VPS50-216ENST00000484954 RHOBP62745 196 aa0.17□□□□□ -2.38
VPS50-216ENST00000484954 KRR1Q13601 381 aaKnown RBP0.17□□□□□ -2.38
VPS50-216ENST00000484954 C1orf134Q5TEV5 83 aa0.17□□□□□ -2.38
VPS50-216ENST00000484954 C22orf39Q6P5X5 142 aa0.17□□□□□ -2.38
VPS50-216ENST00000484954 LINC00322Q6ZN03 302 aaPredicted RBP0.17□□□□□ -2.38
VPS50-216ENST00000484954 ZNF833PQ6ZTB9 187 aa0.17□□□□□ -2.38
VPS50-216ENST00000484954 CNTRLQ7Z7A1 2325 aa0.17□□□□□ -2.38
VPS50-216ENST00000484954 Q8TAT8 98 aa0.17□□□□□ -2.38
VPS50-216ENST00000484954 BORCS5Q969J3 196 aa0.17□□□□□ -2.38
VPS50-216ENST00000484954 PPP1R14BQ96C90 147 aa0.17□□□□□ -2.38
VPS50-216ENST00000484954 LINC00052Q96N35 136 aa0.17□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms