RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 IL3RAP26951 378 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 TCTAP57738 103 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 FBXW4P57775 412 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 TAS2R45P59539 299 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 KRTDAPP60985 99 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 CCL20P78556 96 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 CCL7P80098 99 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 HIST1H1AQ02539 215 aaPredicted RBP3.91□□□□□ -1.78
USP40-213ENST00000483216 EGFEM1PQ0D2K5 195 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 FOXF1Q12946 379 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 IGFBP7Q16270 282 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 TIGITQ495A1 244 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 NMSQ5H8A3 153 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 CT45A1Q5HYN5 189 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 SLC25A34Q6PIV7 304 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 LCN15Q6UWW0 184 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 OLIG3Q7RTU3 272 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 ATP5L2Q7Z4Y8 100 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 MKXQ8IYA7 352 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 SELENOHQ8IZQ5 122 aaKnown RBP3.91□□□□□ -1.78
USP40-213ENST00000483216 MUC15Q8N387 334 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 DEFB125Q8N687 156 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 CT45A3Q8NHU0 189 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 CHCHD1Q96BP2 118 aaKnown RBP3.91□□□□□ -1.78
USP40-213ENST00000483216 ADAT3Q96EY9 351 aaPredicted RBP3.91□□□□□ -1.78
USP40-213ENST00000483216 YPEL2Q96QA6 119 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 SIGMAR1Q99720 223 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 SFXN3Q9BWM7 321 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 MRPL13Q9BYD1 178 aaKnown RBP3.91□□□□□ -1.78
USP40-213ENST00000483216 ULBP2Q9BZM5 246 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 PKIBQ9C010 78 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 ZNF442Q9H7R0 627 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 TMEM167BQ9NRX6 74 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 NAT8BQ9UHF3 227 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 NXT1Q9UKK6 140 aaKnown RBP3.91□□□□□ -1.78
USP40-213ENST00000483216 MCTS1Q9ULC4 181 aaKnown RBP3.91□□□□□ -1.78
USP40-213ENST00000483216 PSG11Q9UQ72 335 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 EYSQ5T1H1 3165 aa3.9□□□□□ -1.78
USP40-213ENST00000483216 HEATR5BQ9P2D3 2071 aa3.9□□□□□ -1.78
USP40-213ENST00000483216 TRBV6-6A0A0A6YYG2 114 aa3.9□□□□□ -1.79
USP40-213ENST00000483216 IGHV7-81A0A0B4J1V7 117 aa3.9□□□□□ -1.79
USP40-213ENST00000483216 A0A1B0GV50 99 aa3.9□□□□□ -1.79
USP40-213ENST00000483216 IGLC7A0M8Q6 106 aa3.9□□□□□ -1.79
USP40-213ENST00000483216 LRRC30A6NM36 301 aa3.9□□□□□ -1.79
USP40-213ENST00000483216 FNDC10F2Z333 226 aa3.9□□□□□ -1.79
USP40-213ENST00000483216 SIVA1O15304 175 aa3.9□□□□□ -1.79
USP40-213ENST00000483216 CST7O76096 145 aa3.9□□□□□ -1.79
USP40-213ENST00000483216 IGLL1P15814 213 aa3.9□□□□□ -1.79
USP40-213ENST00000483216 PEBP1P30086 187 aaKnown RBP3.9□□□□□ -1.79
USP40-213ENST00000483216 CDC34P49427 236 aaPredicted RBP3.9□□□□□ -1.79
USP40-213ENST00000483216 TCL1AP56279 114 aa3.9□□□□□ -1.79
USP40-213ENST00000483216 ZNF121P58317 390 aaPredicted RBP3.9□□□□□ -1.79
USP40-213ENST00000483216 FXYD4P59646 89 aa3.9□□□□□ -1.79
USP40-213ENST00000483216 PLGLB1Q02325 96 aa3.9□□□□□ -1.79
USP40-213ENST00000483216 SLC38A11Q08AI6 406 aa3.9□□□□□ -1.79
USP40-213ENST00000483216 PLCXD2Q0VAA5 305 aa3.9□□□□□ -1.79
USP40-213ENST00000483216 MMDQ15546 238 aa3.9□□□□□ -1.79
USP40-213ENST00000483216 CST6Q15828 149 aa3.9□□□□□ -1.79
USP40-213ENST00000483216 SAMD13Q5VXD3 122 aa3.9□□□□□ -1.79
USP40-213ENST00000483216 ERASQ7Z444 233 aa3.9□□□□□ -1.79
USP40-213ENST00000483216 Q8IYB0 196 aa3.9□□□□□ -1.79
USP40-213ENST00000483216 BOD1L2Q8IYS8 172 aa3.9□□□□□ -1.79
USP40-213ENST00000483216 OR5AS1Q8N127 324 aa3.9□□□□□ -1.79
USP40-213ENST00000483216 STXBP6Q8NFX7 210 aa3.9□□□□□ -1.79
USP40-213ENST00000483216 OR52M1Q8NGK5 317 aa3.9□□□□□ -1.79
USP40-213ENST00000483216 OR9G4Q8NGQ1 327 aa3.9□□□□□ -1.79
USP40-213ENST00000483216 OR1N2Q8NGR9 330 aa3.9□□□□□ -1.79
USP40-213ENST00000483216 OR2AE1Q8NHA4 323 aa3.9□□□□□ -1.79
USP40-213ENST00000483216 SLC25A40Q8TBP6 338 aa3.9□□□□□ -1.79
USP40-213ENST00000483216 GPR146Q96CH1 333 aa3.9□□□□□ -1.79
USP40-213ENST00000483216 OXGR1Q96P68 337 aa3.9□□□□□ -1.79
USP40-213ENST00000483216 OR2V2Q96R30 315 aa3.9□□□□□ -1.79
USP40-213ENST00000483216 TMEM70Q9BUB7 260 aa3.9□□□□□ -1.79
USP40-213ENST00000483216 C11orf1Q9H5F2 150 aa3.9□□□□□ -1.79
USP40-213ENST00000483216 OSTCQ9NRP0 149 aa3.9□□□□□ -1.79
USP40-213ENST00000483216 CTNNBIP1Q9NSA3 81 aaPredicted RBP3.9□□□□□ -1.79
USP40-213ENST00000483216 PIGLQ9Y2B2 252 aa3.9□□□□□ -1.79
USP40-213ENST00000483216 SCN2AQ99250 2005 aa3.9□□□□□ -1.79
USP40-213ENST00000483216 REV3LO60673 3130 aa3.9□□□□□ -1.79
USP40-213ENST00000483216 NINQ8N4C6 2090 aa3.9□□□□□ -1.79
USP40-213ENST00000483216 MYO10Q9HD67 2058 aa3.9□□□□□ -1.79
USP40-213ENST00000483216 PLXND1Q9Y4D7 1925 aa3.89□□□□□ -1.79
USP40-213ENST00000483216 XIRP2A4UGR9 3374 aa3.89□□□□□ -1.79
USP40-213ENST00000483216 CDH23Q9H251 3354 aa3.89□□□□□ -1.79
USP40-213ENST00000483216 TRGV10A0A0A0MS01 117 aa3.89□□□□□ -1.79
USP40-213ENST00000483216 A0A1B0GW15 77 aa3.89□□□□□ -1.79
USP40-213ENST00000483216 C7orf71A4D174 169 aa3.89□□□□□ -1.79
USP40-213ENST00000483216 SLC22A20A6NK97 555 aa3.89□□□□□ -1.79
USP40-213ENST00000483216 ISLRO14498 428 aa3.89□□□□□ -1.79
USP40-213ENST00000483216 RER1O15258 196 aa3.89□□□□□ -1.79
USP40-213ENST00000483216 CRXO43186 299 aaPredicted RBP3.89□□□□□ -1.79
USP40-213ENST00000483216 TGFAP01135 160 aa3.89□□□□□ -1.79
USP40-213ENST00000483216 IGLV3-1P01715 115 aa3.89□□□□□ -1.79
USP40-213ENST00000483216 APCSP02743 223 aa3.89□□□□□ -1.79
USP40-213ENST00000483216 CRYBB3P26998 211 aa3.89□□□□□ -1.79
USP40-213ENST00000483216 CTRLP40313 264 aa3.89□□□□□ -1.79
USP40-213ENST00000483216 OPRK1P41145 380 aa3.89□□□□□ -1.79
USP40-213ENST00000483216 KIR2DS2P43631 304 aa3.89□□□□□ -1.79
USP40-213ENST00000483216 UBE2G1P62253 170 aa3.89□□□□□ -1.79
USP40-213ENST00000483216 TMEM267Q0VDI3 215 aaPredicted RBP3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms