RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 MPV17L2Q567V2 206 aa7.34□□□□□ -1.23
SYNE1-224ENST00000478916 PSG3Q16557 428 aa7.34□□□□□ -1.23
SYNE1-224ENST00000478916 ZXDCQ2QGD7 858 aaPredicted RBP7.34□□□□□ -1.23
SYNE1-224ENST00000478916 UNQ6494/PRO21346Q6UXR6 183 aa7.34□□□□□ -1.23
SYNE1-224ENST00000478916 RPRMLQ8N4K4 120 aa7.34□□□□□ -1.23
SYNE1-224ENST00000478916 PRSS22Q9GZN4 317 aa7.34□□□□□ -1.23
SYNE1-224ENST00000478916 ZNF236Q9UL36 1845 aa7.34□□□□□ -1.23
SYNE1-224ENST00000478916 C9JAW5 83 aa7.34□□□□□ -1.23
SYNE1-224ENST00000478916 TGFBR3LH3BV60 316 aa7.34□□□□□ -1.23
SYNE1-224ENST00000478916 C12orf77C9JDV5 145 aa7.34□□□□□ -1.24
SYNE1-224ENST00000478916 LEPROTO15243 131 aa7.34□□□□□ -1.24
SYNE1-224ENST00000478916 CD5P06127 495 aa7.34□□□□□ -1.24
SYNE1-224ENST00000478916 OR9G9P0C7N8 305 aa7.34□□□□□ -1.24
SYNE1-224ENST00000478916 DTX2Q86UW9 622 aa7.34□□□□□ -1.24
SYNE1-224ENST00000478916 TMEM167AQ8TBQ9 72 aa7.34□□□□□ -1.24
SYNE1-224ENST00000478916 RPL32P62910 135 aaKnown RBP7.33□□□□□ -1.24
SYNE1-224ENST00000478916 PSG7Q13046 419 aa7.33□□□□□ -1.24
SYNE1-224ENST00000478916 GLRX5Q86SX6 157 aa7.33□□□□□ -1.24
SYNE1-224ENST00000478916 VGLL1Q99990 258 aa7.33□□□□□ -1.24
SYNE1-224ENST00000478916 HEATR1Q9H583 2144 aaKnown RBP7.33□□□□□ -1.24
SYNE1-224ENST00000478916 TRGV11A0A075B6L2 103 aa7.33□□□□□ -1.24
SYNE1-224ENST00000478916 TCRBV4S1A1TA0A5B7 111 aa7.33□□□□□ -1.24
SYNE1-224ENST00000478916 DUSP14O95147 198 aaKnown RBP7.33□□□□□ -1.24
SYNE1-224ENST00000478916 RBMY1FQ15415 496 aaKnown RBP7.33□□□□□ -1.24
SYNE1-224ENST00000478916 DPH3P1Q9H4G8 78 aa7.33□□□□□ -1.24
SYNE1-224ENST00000478916 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP7.33□□□□□ -1.24
SYNE1-224ENST00000478916 H3BMM0 161 aa7.33□□□□□ -1.24
SYNE1-224ENST00000478916 IFITM1P13164 125 aa7.33□□□□□ -1.24
SYNE1-224ENST00000478916 COLCA1Q6ZS62 124 aa7.33□□□□□ -1.24
SYNE1-224ENST00000478916 GTF3AQ92664 365 aaKnown RBP7.33□□□□□ -1.24
SYNE1-224ENST00000478916 UBE2WQ96B02 151 aa7.33□□□□□ -1.24
SYNE1-224ENST00000478916 MYOD1P15172 320 aa7.33□□□□□ -1.24
SYNE1-224ENST00000478916 SLC25A48Q6ZT89 311 aaKnown RBP7.33□□□□□ -1.24
SYNE1-224ENST00000478916 STHQ8IWL8 128 aa7.33□□□□□ -1.24
SYNE1-224ENST00000478916 SPANXCQ9NY87 97 aa7.33□□□□□ -1.24
SYNE1-224ENST00000478916 A0A1B0GW64 132 aa7.33□□□□□ -1.24
SYNE1-224ENST00000478916 F8WEM9 126 aa7.33□□□□□ -1.24
SYNE1-224ENST00000478916 REPIN1Q9BWE0 567 aaKnown RBP7.33□□□□□ -1.24
SYNE1-224ENST00000478916 IGLV3-32A0A0A0MS00 114 aa7.33□□□□□ -1.24
SYNE1-224ENST00000478916 IL18BPO95998 194 aa7.33□□□□□ -1.24
SYNE1-224ENST00000478916 ZNF415Q09FC8 603 aa7.33□□□□□ -1.24
SYNE1-224ENST00000478916 C1QL2Q7Z5L3 287 aa7.33□□□□□ -1.24
SYNE1-224ENST00000478916 HTN3P15516 51 aa7.32□□□□□ -1.24
SYNE1-224ENST00000478916 CSRP3P50461 194 aa7.32□□□□□ -1.24
SYNE1-224ENST00000478916 RASL10AQ92737 203 aa7.32□□□□□ -1.24
SYNE1-224ENST00000478916 A0A1W2PRX2 142 aa7.32□□□□□ -1.24
SYNE1-224ENST00000478916 EFNB3Q15768 340 aa7.32□□□□□ -1.24
SYNE1-224ENST00000478916 C20orf204Q6ZNR8 217 aa7.32□□□□□ -1.24
SYNE1-224ENST00000478916 GLMPQ8WWB7 406 aa7.32□□□□□ -1.24
SYNE1-224ENST00000478916 TMEM8BA6NDV4 472 aa7.32□□□□□ -1.24
SYNE1-224ENST00000478916 LAIR2Q6ISS4 152 aa7.32□□□□□ -1.24
SYNE1-224ENST00000478916 CRIPAKQ8N1N5 446 aa7.32□□□□□ -1.24
SYNE1-224ENST00000478916 A0A0G2JK05 382 aa7.32□□□□□ -1.24
SYNE1-224ENST00000478916 C15orf61A6NNL5 157 aa7.32□□□□□ -1.24
SYNE1-224ENST00000478916 CELA3BP08861 270 aa7.32□□□□□ -1.24
SYNE1-224ENST00000478916 TRGV4A0A0C4DH28 118 aa7.32□□□□□ -1.24
SYNE1-224ENST00000478916 SYS1-DBNDD2H3BUS1 97 aa7.32□□□□□ -1.24
SYNE1-224ENST00000478916 DMRTC2Q8IXT2 367 aaPredicted RBP7.32□□□□□ -1.24
SYNE1-224ENST00000478916 OR13A1Q8NGR1 328 aa7.32□□□□□ -1.24
SYNE1-224ENST00000478916 SELENOKQ9Y6D0 94 aa7.32□□□□□ -1.24
SYNE1-224ENST00000478916 SPTA1P02549 2419 aa7.32□□□□□ -1.24
SYNE1-224ENST00000478916 D6R8Y8 96 aa7.32□□□□□ -1.24
SYNE1-224ENST00000478916 MPZP25189 248 aa7.32□□□□□ -1.24
SYNE1-224ENST00000478916 FAM201AQ5SY85 155 aa7.32□□□□□ -1.24
SYNE1-224ENST00000478916 SIPA1L1O43166 1804 aa7.32□□□□□ -1.24
SYNE1-224ENST00000478916 UPK2O00526 184 aa7.31□□□□□ -1.24
SYNE1-224ENST00000478916 PPIFP30405 207 aaKnown RBP7.31□□□□□ -1.24
SYNE1-224ENST00000478916 ZNF625Q96I27 306 aaPredicted RBP7.31□□□□□ -1.24
SYNE1-224ENST00000478916 SPRR3Q9UBC9 169 aa7.31□□□□□ -1.24
SYNE1-224ENST00000478916 TPRP12270 2363 aaKnown RBP7.31□□□□□ -1.24
SYNE1-224ENST00000478916 NBR2O15453 112 aa7.31□□□□□ -1.24
SYNE1-224ENST00000478916 CD55P08174 381 aa7.31□□□□□ -1.24
SYNE1-224ENST00000478916 RNF125Q96EQ8 232 aa7.31□□□□□ -1.24
SYNE1-224ENST00000478916 ATP6V0BQ99437 205 aa7.31□□□□□ -1.24
SYNE1-224ENST00000478916 MRPL27Q9P0M9 148 aaKnown RBP7.31□□□□□ -1.24
SYNE1-224ENST00000478916 SEC16AO15027 2179 aa7.31□□□□□ -1.24
SYNE1-224ENST00000478916 PYYP10082 97 aa7.31□□□□□ -1.24
SYNE1-224ENST00000478916 PYY3Q5JQD4 70 aa7.31□□□□□ -1.24
SYNE1-224ENST00000478916 DEPPQ9NTK1 212 aa7.31□□□□□ -1.24
SYNE1-224ENST00000478916 C3orf79P0CE67 100 aa7.31□□□□□ -1.24
SYNE1-224ENST00000478916 TEX43Q6ZNM6 134 aa7.31□□□□□ -1.24
SYNE1-224ENST00000478916 ZNF664Q8N3J9 261 aa7.31□□□□□ -1.24
SYNE1-224ENST00000478916 CACNA1DQ01668 2161 aa7.31□□□□□ -1.24
SYNE1-224ENST00000478916 SHISA3A0PJX4 238 aa7.31□□□□□ -1.24
SYNE1-224ENST00000478916 BTCP35070 178 aa7.31□□□□□ -1.24
SYNE1-224ENST00000478916 INS-IGF2F8WCM5 200 aa7.3□□□□□ -1.24
SYNE1-224ENST00000478916 SOCS3O14543 225 aa7.3□□□□□ -1.24
SYNE1-224ENST00000478916 INSP01308 110 aa7.3□□□□□ -1.24
SYNE1-224ENST00000478916 INAFM2P0DMQ5 153 aa7.3□□□□□ -1.24
SYNE1-224ENST00000478916 C8orf46Q8TAG6 207 aa7.3□□□□□ -1.24
SYNE1-224ENST00000478916 CHCHD5Q9BSY4 110 aa7.3□□□□□ -1.24
SYNE1-224ENST00000478916 CHAC1Q9BUX1 264 aa7.3□□□□□ -1.24
SYNE1-224ENST00000478916 CD33P20138 364 aa7.3□□□□□ -1.24
SYNE1-224ENST00000478916 TMEM258P61165 79 aa7.3□□□□□ -1.24
SYNE1-224ENST00000478916 LINC00114Q6XXX2 140 aa7.3□□□□□ -1.24
SYNE1-224ENST00000478916 KIF26BQ2KJY2 2108 aa7.3□□□□□ -1.24
SYNE1-224ENST00000478916 CEP290O15078 2479 aa7.3□□□□□ -1.24
SYNE1-224ENST00000478916 DOCK11Q5JSL3 2073 aa7.3□□□□□ -1.24
SYNE1-224ENST00000478916 MYOFQ9NZM1 2061 aa7.3□□□□□ -1.24
SYNE1-224ENST00000478916 TRBV20-1A0A075B6N2 111 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms