RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 MYOZ3Q8TDC0 251 aa11.88□□□□□ -0.51
HDAC6-220ENST00000477528 TCF24Q7RTU0 167 aa11.88□□□□□ -0.51
HDAC6-220ENST00000477528 NUDT10Q8NFP7 164 aa11.88□□□□□ -0.51
HDAC6-220ENST00000477528 NUDT11Q96G61 164 aa11.88□□□□□ -0.51
HDAC6-220ENST00000477528 TMEM70Q9BUB7 260 aa11.88□□□□□ -0.51
HDAC6-220ENST00000477528 NRN1Q9NPD7 142 aa11.88□□□□□ -0.51
HDAC6-220ENST00000477528 AP5S1Q9NUS5 200 aa11.88□□□□□ -0.51
HDAC6-220ENST00000477528 CA1P00915 261 aaPredicted RBP11.88□□□□□ -0.51
HDAC6-220ENST00000477528 WFDC3Q8IUB2 231 aa11.88□□□□□ -0.51
HDAC6-220ENST00000477528 LINC00311Q8N616 119 aa11.88□□□□□ -0.51
HDAC6-220ENST00000477528 MAP1LC3AQ9H492 121 aa11.88□□□□□ -0.51
HDAC6-220ENST00000477528 MSRB2Q9Y3D2 182 aa11.88□□□□□ -0.51
HDAC6-220ENST00000477528 OOSP1A8MZH6 123 aa11.88□□□□□ -0.51
HDAC6-220ENST00000477528 M0R1W7 72 aa11.88□□□□□ -0.51
HDAC6-220ENST00000477528 MMP23AO75900 390 aa11.88□□□□□ -0.51
HDAC6-220ENST00000477528 TRGV3P03979 118 aa11.88□□□□□ -0.51
HDAC6-220ENST00000477528 A0A1W2PPI3 338 aa11.87□□□□□ -0.51
HDAC6-220ENST00000477528 ZNF600Q6ZNG1 722 aa11.87□□□□□ -0.51
HDAC6-220ENST00000477528 MGPP08493 103 aa11.87□□□□□ -0.51
HDAC6-220ENST00000477528 VWC2Q2TAL6 325 aa11.87□□□□□ -0.51
HDAC6-220ENST00000477528 IGHV3OR16-13A0A075B7E8 117 aa11.87□□□□□ -0.51
HDAC6-220ENST00000477528 IGHV3-74A0A0B4J1X5 117 aa11.87□□□□□ -0.51
HDAC6-220ENST00000477528 LHBP01229 141 aa11.87□□□□□ -0.51
HDAC6-220ENST00000477528 LOXP28300 417 aaPredicted RBP11.87□□□□□ -0.51
HDAC6-220ENST00000477528 ATP5L2Q7Z4Y8 100 aa11.87□□□□□ -0.51
HDAC6-220ENST00000477528 ATOH7Q8N100 152 aa11.87□□□□□ -0.51
HDAC6-220ENST00000477528 FAM19A2Q8N3H0 131 aa11.87□□□□□ -0.51
HDAC6-220ENST00000477528 YLPM1P49750 1951 aaKnown RBP11.87□□□□□ -0.51
HDAC6-220ENST00000477528 FAM168AQ92567 244 aa11.86□□□□□ -0.51
HDAC6-220ENST00000477528 SLC25A39Q9BZJ4 359 aaPredicted RBP11.86□□□□□ -0.51
HDAC6-220ENST00000477528 TM4SF20Q53R12 229 aa11.86□□□□□ -0.51
HDAC6-220ENST00000477528 TMEM136Q6ZRR5 245 aa11.86□□□□□ -0.51
HDAC6-220ENST00000477528 PSG8Q9UQ74 426 aa11.86□□□□□ -0.51
HDAC6-220ENST00000477528 COX6B1P14854 86 aa11.86□□□□□ -0.51
HDAC6-220ENST00000477528 BEND2Q8NDZ0 799 aa11.86□□□□□ -0.51
HDAC6-220ENST00000477528 SSBP4Q9BWG4 385 aaPredicted RBP11.86□□□□□ -0.51
HDAC6-220ENST00000477528 IGHV2-5P01817 119 aa11.86□□□□□ -0.51
HDAC6-220ENST00000477528 NBL1P41271 181 aa11.86□□□□□ -0.51
HDAC6-220ENST00000477528 FAM106AQ4KMX7 169 aa11.86□□□□□ -0.51
HDAC6-220ENST00000477528 MINOS1Q5TGZ0 78 aa11.86□□□□□ -0.51
HDAC6-220ENST00000477528 Q6ZPA2 131 aa11.86□□□□□ -0.51
HDAC6-220ENST00000477528 NDUFAF3Q9BU61 184 aa11.86□□□□□ -0.51
HDAC6-220ENST00000477528 MINOS1-NBL1R4GNA1 71 aa11.86□□□□□ -0.51
HDAC6-220ENST00000477528 COL6A6A6NMZ7 2263 aa11.86□□□□□ -0.51
HDAC6-220ENST00000477528 NDUFS6O75380 124 aaKnown RBP11.85□□□□□ -0.51
HDAC6-220ENST00000477528 C11orf1Q9H5F2 150 aa11.85□□□□□ -0.51
HDAC6-220ENST00000477528 ZNF324O75467 553 aaPredicted RBP11.85□□□□□ -0.51
HDAC6-220ENST00000477528 CLEC19AQ6UXS0 136 aa11.85□□□□□ -0.51
HDAC6-220ENST00000477528 LHFPL4Q7Z7J7 247 aa11.85□□□□□ -0.51
HDAC6-220ENST00000477528 SCRT1Q9BWW7 348 aa11.85□□□□□ -0.51
HDAC6-220ENST00000477528 IGHV3OR16-8A0A075B7F1 116 aa11.85□□□□□ -0.51
HDAC6-220ENST00000477528 TCRAP04437 139 aa11.85□□□□□ -0.51
HDAC6-220ENST00000477528 KLRD1Q13241 179 aa11.85□□□□□ -0.51
HDAC6-220ENST00000477528 LY6DQ14210 128 aa11.85□□□□□ -0.51
HDAC6-220ENST00000477528 RASL11AQ6T310 242 aa11.85□□□□□ -0.51
HDAC6-220ENST00000477528 A0A1B0GV90 55 aa11.85□□□□□ -0.51
HDAC6-220ENST00000477528 IGLV2-14P01704 120 aa11.85□□□□□ -0.51
HDAC6-220ENST00000477528 C5orf64Q2M2E5 130 aa11.85□□□□□ -0.51
HDAC6-220ENST00000477528 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.85□□□□□ -0.51
HDAC6-220ENST00000477528 VMO1Q7Z5L0 202 aa11.85□□□□□ -0.51
HDAC6-220ENST00000477528 SRSF8Q9BRL6 282 aaKnown RBP11.85□□□□□ -0.51
HDAC6-220ENST00000477528 SLC25A34Q6PIV7 304 aa11.84□□□□□ -0.51
HDAC6-220ENST00000477528 HINT1P49773 126 aaPredicted RBP11.84□□□□□ -0.51
HDAC6-220ENST00000477528 EFNA4P52798 201 aa11.84□□□□□ -0.51
HDAC6-220ENST00000477528 RNF151Q2KHN1 245 aa11.84□□□□□ -0.51
HDAC6-220ENST00000477528 TMEM249Q2WGJ8 235 aa11.84□□□□□ -0.51
HDAC6-220ENST00000477528 PRSS33Q8NF86 280 aa11.84□□□□□ -0.51
HDAC6-220ENST00000477528 ZFHX2Q9C0A1 2572 aaPredicted RBP11.84□□□□□ -0.51
HDAC6-220ENST00000477528 IGHV3-49A0A0A0MS15 119 aa11.84□□□□□ -0.51
HDAC6-220ENST00000477528 IGHV3-66A0A0C4DH42 116 aa11.84□□□□□ -0.51
HDAC6-220ENST00000477528 SPRNQ5BIV9 151 aa11.84□□□□□ -0.51
HDAC6-220ENST00000477528 PRELID3AQ96N28 172 aa11.84□□□□□ -0.51
HDAC6-220ENST00000477528 CBY3A6NI87 242 aa11.83□□□□□ -0.52
HDAC6-220ENST00000477528 K7EM74 188 aa11.83□□□□□ -0.52
HDAC6-220ENST00000477528 RHOGP84095 191 aa11.83□□□□□ -0.52
HDAC6-220ENST00000477528 CEP350Q5VT06 3117 aa11.83□□□□□ -0.52
HDAC6-220ENST00000477528 PMS2P5A8MQ11 134 aa11.83□□□□□ -0.52
HDAC6-220ENST00000477528 DNLZQ5SXM8 178 aa11.83□□□□□ -0.52
HDAC6-220ENST00000477528 ZNF329Q86UD4 541 aa11.83□□□□□ -0.52
HDAC6-220ENST00000477528 TMEM256Q8N2U0 113 aa11.83□□□□□ -0.52
HDAC6-220ENST00000477528 KAAG1Q9UBP8 84 aa11.83□□□□□ -0.52
HDAC6-220ENST00000477528 A6NDN8 102 aa11.83□□□□□ -0.52
HDAC6-220ENST00000477528 ZNF207O43670 478 aaKnown RBP11.83□□□□□ -0.52
HDAC6-220ENST00000477528 APOHP02749 345 aaPredicted RBP11.83□□□□□ -0.52
HDAC6-220ENST00000477528 SRRM4A7MD48 611 aaKnown RBP11.83□□□□□ -0.52
HDAC6-220ENST00000477528 TYMSP04818 313 aa11.83□□□□□ -0.52
HDAC6-220ENST00000477528 C12orf54Q6X4T0 127 aa11.83□□□□□ -0.52
HDAC6-220ENST00000477528 SEM1Q6ZVN7 128 aa11.83□□□□□ -0.52
HDAC6-220ENST00000477528 INTS1Q8N201 2190 aaKnown RBP11.82□□□□□ -0.52
HDAC6-220ENST00000477528 EML6Q6ZMW3 1958 aa11.82□□□□□ -0.52
HDAC6-220ENST00000477528 PRTN3P24158 256 aa11.82□□□□□ -0.52
HDAC6-220ENST00000477528 SLC50A1Q9BRV3 221 aa11.82□□□□□ -0.52
HDAC6-220ENST00000477528 LY6HO94772 140 aa11.82□□□□□ -0.52
HDAC6-220ENST00000477528 CTAG1AP78358 180 aa11.82□□□□□ -0.52
HDAC6-220ENST00000477528 FER1L6-AS1Q8NA97 138 aa11.82□□□□□ -0.52
HDAC6-220ENST00000477528 MIEN1Q9BRT3 115 aa11.82□□□□□ -0.52
HDAC6-220ENST00000477528 EBLN2Q6P2I7 272 aa11.82□□□□□ -0.52
HDAC6-220ENST00000477528 EXOC3-AS1Q8N2X6 119 aa11.82□□□□□ -0.52
HDAC6-220ENST00000477528 PHLDA3Q9Y5J5 127 aa11.82□□□□□ -0.52
HDAC6-220ENST00000477528 GPX1P07203 203 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms