RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 ZNF486Q96H40 463 aaPredicted RBP3.14□□□□□ -1.91
USP4-209ENST00000475873 PRRT1Q99946 306 aa3.14□□□□□ -1.91
USP4-209ENST00000475873 C2orf88Q9BSF0 95 aa3.14□□□□□ -1.91
USP4-209ENST00000475873 CABLES2Q9BTV7 478 aa3.14□□□□□ -1.91
USP4-209ENST00000475873 MAGIXQ9H6Y5 334 aa3.14□□□□□ -1.91
USP4-209ENST00000475873 ZNF556Q9HAH1 456 aa3.14□□□□□ -1.91
USP4-209ENST00000475873 GSN-AS1Q9NRJ2 163 aa3.14□□□□□ -1.91
USP4-209ENST00000475873 IMPAD1Q9NX62 359 aa3.14□□□□□ -1.91
USP4-209ENST00000475873 CCDC59Q9P031 241 aaKnown RBP3.14□□□□□ -1.91
USP4-209ENST00000475873 F11RQ9Y624 299 aaKnown RBP3.14□□□□□ -1.91
USP4-209ENST00000475873 TRBV6-7A0A0A0MS04 114 aa3.13□□□□□ -1.91
USP4-209ENST00000475873 A0A1W2PS18 150 aa3.13□□□□□ -1.91
USP4-209ENST00000475873 FABP12A6NFH5 140 aa3.13□□□□□ -1.91
USP4-209ENST00000475873 FOXI3A8MTJ6 420 aaPredicted RBP3.13□□□□□ -1.91
USP4-209ENST00000475873 OGG1O15527 345 aa3.13□□□□□ -1.91
USP4-209ENST00000475873 CRXO43186 299 aaPredicted RBP3.13□□□□□ -1.91
USP4-209ENST00000475873 PPBPP02775 128 aa3.13□□□□□ -1.91
USP4-209ENST00000475873 CDK1P06493 297 aa3.13□□□□□ -1.91
USP4-209ENST00000475873 OR13C7P0DN81 318 aa3.13□□□□□ -1.91
USP4-209ENST00000475873 ELK1P19419 428 aa3.13□□□□□ -1.91
USP4-209ENST00000475873 CRYBB3P26998 211 aa3.13□□□□□ -1.91
USP4-209ENST00000475873 HLA-DMAP28067 261 aa3.13□□□□□ -1.91
USP4-209ENST00000475873 POLR2IP36954 125 aaKnown RBP3.13□□□□□ -1.91
USP4-209ENST00000475873 GPX4P36969 197 aaPredicted RBP3.13□□□□□ -1.91
USP4-209ENST00000475873 ID1P41134 155 aa3.13□□□□□ -1.91
USP4-209ENST00000475873 NKX2-1P43699 371 aaPredicted RBP3.13□□□□□ -1.91
USP4-209ENST00000475873 GNGT1P63211 74 aa3.13□□□□□ -1.91
USP4-209ENST00000475873 BLOC1S1P78537 153 aa3.13□□□□□ -1.91
USP4-209ENST00000475873 DHRS2Q13268 280 aa3.13□□□□□ -1.91
USP4-209ENST00000475873 UNC119Q13432 240 aa3.13□□□□□ -1.91
USP4-209ENST00000475873 TPBGQ13641 420 aa3.13□□□□□ -1.91
USP4-209ENST00000475873 ZNF79Q15937 498 aa3.13□□□□□ -1.91
USP4-209ENST00000475873 AMTNQ6UX39 209 aa3.13□□□□□ -1.91
USP4-209ENST00000475873 TMED4Q7Z7H5 227 aa3.13□□□□□ -1.91
USP4-209ENST00000475873 JAGN1Q8N5M9 183 aa3.13□□□□□ -1.91
USP4-209ENST00000475873 LINC00612Q8N6U2 182 aa3.13□□□□□ -1.91
USP4-209ENST00000475873 OR56B1Q8NGI3 324 aa3.13□□□□□ -1.91
USP4-209ENST00000475873 OR4C16Q8NGL9 310 aa3.13□□□□□ -1.91
USP4-209ENST00000475873 GPR148Q8TDV2 347 aa3.13□□□□□ -1.91
USP4-209ENST00000475873 ADTRPQ96IZ2 230 aa3.13□□□□□ -1.91
USP4-209ENST00000475873 LINC01600Q96MT4 127 aa3.13□□□□□ -1.91
USP4-209ENST00000475873 ZNF2Q9BSG1 426 aaPredicted RBP3.13□□□□□ -1.91
USP4-209ENST00000475873 DCUN1D5Q9BTE7 237 aa3.13□□□□□ -1.91
USP4-209ENST00000475873 DNAJC4Q9NNZ3 241 aa3.13□□□□□ -1.91
USP4-209ENST00000475873 THYN1Q9P016 225 aa3.13□□□□□ -1.91
USP4-209ENST00000475873 GOLT1BQ9Y3E0 138 aa3.13□□□□□ -1.91
USP4-209ENST00000475873 DAPL1A0PJW8 107 aa3.12□□□□□ -1.91
USP4-209ENST00000475873 SMCO3A2RU48 225 aa3.12□□□□□ -1.91
USP4-209ENST00000475873 METTL21EPA6NDL7 271 aa3.12□□□□□ -1.91
USP4-209ENST00000475873 F6UB75 175 aa3.12□□□□□ -1.91
USP4-209ENST00000475873 H3BNG1 76 aa3.12□□□□□ -1.91
USP4-209ENST00000475873 SOCS1O15524 211 aa3.12□□□□□ -1.91
USP4-209ENST00000475873 SNAI2O43623 268 aa3.12□□□□□ -1.91
USP4-209ENST00000475873 IGLV2-11P01706 119 aa3.12□□□□□ -1.91
USP4-209ENST00000475873 EIF4EP06730 217 aaKnown RBP3.12□□□□□ -1.91
USP4-209ENST00000475873 CD37P11049 281 aa3.12□□□□□ -1.91
USP4-209ENST00000475873 PRDX6P30041 224 aa3.12□□□□□ -1.91
USP4-209ENST00000475873 TSPOP30536 169 aa3.12□□□□□ -1.91
USP4-209ENST00000475873 TMEM50BP56557 158 aa3.12□□□□□ -1.91
USP4-209ENST00000475873 RPS11P62280 158 aaKnown RBP eCLIP3.12□□□□□ -1.91
USP4-209ENST00000475873 PPP3R1P63098 170 aa3.12□□□□□ -1.91
USP4-209ENST00000475873 QRFPP83859 136 aa3.12□□□□□ -1.91
USP4-209ENST00000475873 MS4A2Q01362 244 aa3.12□□□□□ -1.91
USP4-209ENST00000475873 GAGE1Q13065 139 aa3.12□□□□□ -1.91
USP4-209ENST00000475873 ASAH1Q13510 395 aa3.12□□□□□ -1.91
USP4-209ENST00000475873 RAB32Q13637 225 aa3.12□□□□□ -1.91
USP4-209ENST00000475873 COX19Q49B96 90 aa3.12□□□□□ -1.91
USP4-209ENST00000475873 C5orf47Q569G3 176 aa3.12□□□□□ -1.91
USP4-209ENST00000475873 RBM48Q5RL73 367 aaKnown RBP3.12□□□□□ -1.91
USP4-209ENST00000475873 WFDC10BQ8IUB3 73 aa3.12□□□□□ -1.91
USP4-209ENST00000475873 PQLC1Q8N2U9 271 aa3.12□□□□□ -1.91
USP4-209ENST00000475873 OR5H6Q8NGV6 325 aa3.12□□□□□ -1.91
USP4-209ENST00000475873 VSTM2AQ8TAG5 236 aa3.12□□□□□ -1.91
USP4-209ENST00000475873 DNAJC9Q8WXX5 260 aa3.12□□□□□ -1.91
USP4-209ENST00000475873 GGHQ92820 318 aa3.12□□□□□ -1.91
USP4-209ENST00000475873 SLC25A46Q96AG3 418 aa3.12□□□□□ -1.91
USP4-209ENST00000475873 CMTM5Q96DZ9 223 aa3.12□□□□□ -1.91
USP4-209ENST00000475873 Q96MT0 163 aa3.12□□□□□ -1.91
USP4-209ENST00000475873 LINC00467Q9BRT7 94 aa3.12□□□□□ -1.91
USP4-209ENST00000475873 GINS3Q9BRX5 216 aa3.12□□□□□ -1.91
USP4-209ENST00000475873 QTRT1Q9BXR0 403 aaKnown RBP3.12□□□□□ -1.91
USP4-209ENST00000475873 BIN3Q9NQY0 253 aa3.12□□□□□ -1.91
USP4-209ENST00000475873 FGFR1OP2Q9NVK5 253 aa3.12□□□□□ -1.91
USP4-209ENST00000475873 BET1LQ9NYM9 111 aa3.12□□□□□ -1.91
USP4-209ENST00000475873 MRPL36Q9P0J6 103 aaKnown RBP3.12□□□□□ -1.91
USP4-209ENST00000475873 GSKIPQ9P0R6 139 aa3.12□□□□□ -1.91
USP4-209ENST00000475873 U3KQE9 123 aa3.12□□□□□ -1.91
USP4-209ENST00000475873 IGKV1D-8A0A087WSZ0 117 aa3.11□□□□□ -1.91
USP4-209ENST00000475873 IGKV1D-13A0A0B4J2D9 117 aa3.11□□□□□ -1.91
USP4-209ENST00000475873 TRBV5-5A0A0J9YX44 114 aa3.11□□□□□ -1.91
USP4-209ENST00000475873 A0A1W2PPK0 400 aa3.11□□□□□ -1.91
USP4-209ENST00000475873 A8MTW9 85 aa3.11□□□□□ -1.91
USP4-209ENST00000475873 TRDCB7Z8K6 153 aa3.11□□□□□ -1.91
USP4-209ENST00000475873 G3V2T6 193 aa3.11□□□□□ -1.91
USP4-209ENST00000475873 J3QRK9 145 aa3.11□□□□□ -1.91
USP4-209ENST00000475873 UPK2O00526 184 aa3.11□□□□□ -1.91
USP4-209ENST00000475873 FABP7O15540 132 aa3.11□□□□□ -1.91
USP4-209ENST00000475873 ADAP1O75689 374 aa3.11□□□□□ -1.91
USP4-209ENST00000475873 CD2P06729 351 aa3.11□□□□□ -1.91
USP4-209ENST00000475873 PET100P0DJ07 73 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms