RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 PEAK1Q9H792 1746 aa7.44□□□□□ -1.22
COL6A3-210ENST00000473258 FAM90A9PA6NNJ1 464 aa7.44□□□□□ -1.22
COL6A3-210ENST00000473258 CFHR2P36980 270 aa7.44□□□□□ -1.22
COL6A3-210ENST00000473258 CLLU1OSQ5K130 101 aa7.44□□□□□ -1.22
COL6A3-210ENST00000473258 TNRC6AQ8NDV7 1962 aaKnown RBP7.44□□□□□ -1.22
COL6A3-210ENST00000473258 C17orf98A8MV24 154 aa7.43□□□□□ -1.22
COL6A3-210ENST00000473258 BAALC-AS2P0C853 105 aa7.43□□□□□ -1.22
COL6A3-210ENST00000473258 OXLD1Q5BKU9 147 aa7.43□□□□□ -1.22
COL6A3-210ENST00000473258 FAM166AQ6J272 317 aa7.43□□□□□ -1.22
COL6A3-210ENST00000473258 TMEM171Q8WVE6 324 aa7.43□□□□□ -1.22
COL6A3-210ENST00000473258 HEATR5BQ9P2D3 2071 aa7.43□□□□□ -1.22
COL6A3-210ENST00000473258 TDRD6O60522 2096 aaKnown RBP7.43□□□□□ -1.22
COL6A3-210ENST00000473258 MYO5BQ9ULV0 1848 aa7.43□□□□□ -1.22
COL6A3-210ENST00000473258 TRAV25A0A0B4J276 109 aa7.43□□□□□ -1.22
COL6A3-210ENST00000473258 TMEM42Q69YG0 159 aa7.43□□□□□ -1.22
COL6A3-210ENST00000473258 PATE1Q8WXA2 126 aa7.43□□□□□ -1.22
COL6A3-210ENST00000473258 SHPRHQ149N8 1683 aa7.43□□□□□ -1.22
COL6A3-210ENST00000473258 VCYO14598 125 aa7.43□□□□□ -1.22
COL6A3-210ENST00000473258 LINC01620Q4KN68 170 aa7.43□□□□□ -1.22
COL6A3-210ENST00000473258 DSCR8Q96T75 97 aa7.43□□□□□ -1.22
COL6A3-210ENST00000473258 TRAV12-2A0A075B6T6 113 aa7.42□□□□□ -1.22
COL6A3-210ENST00000473258 CDK2AP2O75956 126 aa7.42□□□□□ -1.22
COL6A3-210ENST00000473258 CELA2BP08218 269 aaPredicted RBP7.42□□□□□ -1.22
COL6A3-210ENST00000473258 HGFACQ04756 655 aa7.42□□□□□ -1.22
COL6A3-210ENST00000473258 LHFPL1Q86WI0 220 aa7.42□□□□□ -1.22
COL6A3-210ENST00000473258 LY6G5BQ8NDX9 201 aa7.42□□□□□ -1.22
COL6A3-210ENST00000473258 RCHY1Q96PM5 261 aa7.42□□□□□ -1.22
COL6A3-210ENST00000473258 TRGV11A0A075B6L2 103 aa7.42□□□□□ -1.22
COL6A3-210ENST00000473258 CLPSL1A2RUU4 121 aa7.42□□□□□ -1.22
COL6A3-210ENST00000473258 C21orf140B9A014 251 aa7.42□□□□□ -1.22
COL6A3-210ENST00000473258 BUB3O43684 328 aa7.42□□□□□ -1.22
COL6A3-210ENST00000473258 PRB2P02812 416 aaPredicted RBP7.42□□□□□ -1.22
COL6A3-210ENST00000473258 THBDP07204 575 aa7.42□□□□□ -1.22
COL6A3-210ENST00000473258 C3orf36Q3SXR2 165 aa7.42□□□□□ -1.22
COL6A3-210ENST00000473258 TREML4Q6UXN2 200 aa7.42□□□□□ -1.22
COL6A3-210ENST00000473258 IL17RELQ6ZVW7 336 aa7.42□□□□□ -1.22
COL6A3-210ENST00000473258 RNF152Q8N8N0 203 aa7.42□□□□□ -1.22
COL6A3-210ENST00000473258 C10orf105Q8TEF2 133 aa7.42□□□□□ -1.22
COL6A3-210ENST00000473258 IGHV3-72A0A0B4J1Y9 119 aa7.42□□□□□ -1.22
COL6A3-210ENST00000473258 SPAARA0A1B0GVQ0 90 aa7.42□□□□□ -1.22
COL6A3-210ENST00000473258 INS-IGF2F8WCM5 200 aa7.42□□□□□ -1.22
COL6A3-210ENST00000473258 INSP01308 110 aa7.42□□□□□ -1.22
COL6A3-210ENST00000473258 ZC2HC1AQ96GY0 325 aa7.42□□□□□ -1.22
COL6A3-210ENST00000473258 C1QL2Q7Z5L3 287 aa7.42□□□□□ -1.22
COL6A3-210ENST00000473258 PCP2Q8IVA1 136 aa7.42□□□□□ -1.22
COL6A3-210ENST00000473258 SPACA3Q8IXA5 215 aa7.42□□□□□ -1.22
COL6A3-210ENST00000473258 C20orf197Q8N268 126 aa7.42□□□□□ -1.22
COL6A3-210ENST00000473258 CHCHD2Q9Y6H1 151 aaPredicted RBP7.42□□□□□ -1.22
COL6A3-210ENST00000473258 TRBV25-1A0A075B6N4 114 aa7.41□□□□□ -1.22
COL6A3-210ENST00000473258 IGLV3-27P01718 113 aa7.41□□□□□ -1.22
COL6A3-210ENST00000473258 VN1R4Q7Z5H5 301 aa7.41□□□□□ -1.22
COL6A3-210ENST00000473258 IDI2-AS1Q9NZ38 188 aa7.41□□□□□ -1.22
COL6A3-210ENST00000473258 TMEM30BQ3MIR4 351 aa7.41□□□□□ -1.22
COL6A3-210ENST00000473258 MRPL35Q9NZE8 188 aaKnown RBP7.41□□□□□ -1.22
COL6A3-210ENST00000473258 IGHV3OR16-12A0A075B7B8 117 aa7.41□□□□□ -1.22
COL6A3-210ENST00000473258 SHISA5Q8N114 240 aa7.41□□□□□ -1.22
COL6A3-210ENST00000473258 LINC01555Q8NAE3 123 aa7.41□□□□□ -1.22
COL6A3-210ENST00000473258 PIKFYVEQ9Y2I7 2098 aa7.41□□□□□ -1.22
COL6A3-210ENST00000473258 F8VRH5 84 aa7.41□□□□□ -1.22
COL6A3-210ENST00000473258 F8WEM9 126 aa7.41□□□□□ -1.22
COL6A3-210ENST00000473258 SMKR1H3BMG3 65 aa7.41□□□□□ -1.22
COL6A3-210ENST00000473258 WISP3O95389 354 aaPredicted RBP7.41□□□□□ -1.22
COL6A3-210ENST00000473258 LIME1Q9H400 295 aa7.41□□□□□ -1.22
COL6A3-210ENST00000473258 SCRT2Q9NQ03 307 aa7.41□□□□□ -1.22
COL6A3-210ENST00000473258 LHFPL6Q9Y693 200 aa7.41□□□□□ -1.22
COL6A3-210ENST00000473258 FER1L6Q2WGJ9 1857 aa7.41□□□□□ -1.22
COL6A3-210ENST00000473258 CKAP5Q14008 2032 aa7.4□□□□□ -1.22
COL6A3-210ENST00000473258 IGHV3OR15-7A0A075B7D8 119 aa7.4□□□□□ -1.22
COL6A3-210ENST00000473258 LYRM9A8MSI8 78 aa7.4□□□□□ -1.22
COL6A3-210ENST00000473258 CCDC179H3BU77 68 aa7.4□□□□□ -1.22
COL6A3-210ENST00000473258 PRB1P04280 392 aa7.4□□□□□ -1.22
COL6A3-210ENST00000473258 CRYGSP22914 178 aa7.4□□□□□ -1.22
COL6A3-210ENST00000473258 ALPK2Q86TB3 2170 aa7.4□□□□□ -1.22
COL6A3-210ENST00000473258 RPL15P61313 204 aaKnown RBP7.4□□□□□ -1.22
COL6A3-210ENST00000473258 CCL8P80075 99 aa7.4□□□□□ -1.22
COL6A3-210ENST00000473258 ZFP2Q6ZN57 461 aa7.4□□□□□ -1.22
COL6A3-210ENST00000473258 PYGO2Q9BRQ0 406 aa7.4□□□□□ -1.22
COL6A3-210ENST00000473258 IGHV1OR21-1A0A087WYE8 117 aa7.4□□□□□ -1.23
COL6A3-210ENST00000473258 FXYD2P54710 66 aa7.4□□□□□ -1.23
COL6A3-210ENST00000473258 SPATA31B1PQ5VZV4 182 aa7.4□□□□□ -1.23
COL6A3-210ENST00000473258 SLC50A1Q9BRV3 221 aa7.4□□□□□ -1.23
COL6A3-210ENST00000473258 ZNF747Q9BV97 191 aa7.4□□□□□ -1.23
COL6A3-210ENST00000473258 FAM186AA6NE01 2351 aa7.4□□□□□ -1.23
COL6A3-210ENST00000473258 LINC00694P0DN24 101 aa7.4□□□□□ -1.23
COL6A3-210ENST00000473258 SNRPD3P62318 126 aaKnown RBP7.4□□□□□ -1.23
COL6A3-210ENST00000473258 ESPL1Q14674 2120 aa7.4□□□□□ -1.23
COL6A3-210ENST00000473258 H3BT86 120 aa7.39□□□□□ -1.23
COL6A3-210ENST00000473258 TMEM14EPQ6UXP3 125 aa7.39□□□□□ -1.23
COL6A3-210ENST00000473258 IFT172Q9UG01 1749 aa7.39□□□□□ -1.23
COL6A3-210ENST00000473258 TIMM17BO60830 172 aa7.39□□□□□ -1.23
COL6A3-210ENST00000473258 CECR9P0C854 216 aa7.39□□□□□ -1.23
COL6A3-210ENST00000473258 PFN2P35080 140 aa7.39□□□□□ -1.23
COL6A3-210ENST00000473258 CD69Q07108 199 aa7.39□□□□□ -1.23
COL6A3-210ENST00000473258 PRR30Q53SZ7 412 aaPredicted RBP7.39□□□□□ -1.23
COL6A3-210ENST00000473258 SSC4DQ8WTU2 575 aa7.39□□□□□ -1.23
COL6A3-210ENST00000473258 BAZ2AQ9UIF9 1905 aaKnown RBP7.39□□□□□ -1.23
COL6A3-210ENST00000473258 IGKV1D-13A0A0B4J2D9 117 aa7.39□□□□□ -1.23
COL6A3-210ENST00000473258 IGKV1-13P0DP09 117 aa7.39□□□□□ -1.23
COL6A3-210ENST00000473258 SLC25A47Q6Q0C1 308 aa7.39□□□□□ -1.23
COL6A3-210ENST00000473258 DPH3P1Q9H4G8 78 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms