RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 A0A0G2JLM5 398 aa10.01□□□□□ -0.81
VPS13D-205ENST00000473099 PSMB11A5LHX3 300 aa10.01□□□□□ -0.81
VPS13D-205ENST00000473099 NUPL2O15504 423 aaKnown RBP10.01□□□□□ -0.81
VPS13D-205ENST00000473099 LY6G6DO95868 133 aa10.01□□□□□ -0.81
VPS13D-205ENST00000473099 IGKV1-17P01599 117 aa10.01□□□□□ -0.81
VPS13D-205ENST00000473099 IGLV1-40P01703 118 aa10.01□□□□□ -0.81
VPS13D-205ENST00000473099 TRGV3P03979 118 aa10.01□□□□□ -0.81
VPS13D-205ENST00000473099 RD3LP0DJH9 198 aa10.01□□□□□ -0.81
VPS13D-205ENST00000473099 GATA2P23769 480 aaPredicted RBP10.01□□□□□ -0.81
VPS13D-205ENST00000473099 SLC35B1P78383 322 aa10.01□□□□□ -0.81
VPS13D-205ENST00000473099 CFHR3Q02985 330 aa10.01□□□□□ -0.81
VPS13D-205ENST00000473099 GUK1Q16774 197 aa10.01□□□□□ -0.81
VPS13D-205ENST00000473099 TIGITQ495A1 244 aa10.01□□□□□ -0.81
VPS13D-205ENST00000473099 KHDC3LQ587J8 217 aa10.01□□□□□ -0.81
VPS13D-205ENST00000473099 GCSAMLQ5JQS6 135 aa10.01□□□□□ -0.81
VPS13D-205ENST00000473099 PQLC2Q6ZP29 291 aa10.01□□□□□ -0.81
VPS13D-205ENST00000473099 Q8N2B8 174 aa10.01□□□□□ -0.81
VPS13D-205ENST00000473099 ZNF418Q8TF45 676 aaPredicted RBP10.01□□□□□ -0.81
VPS13D-205ENST00000473099 Q8WTZ3 238 aa10.01□□□□□ -0.81
VPS13D-205ENST00000473099 EIF5A2Q9GZV4 153 aaKnown RBP10.01□□□□□ -0.81
VPS13D-205ENST00000473099 ANKRD34BA5PLL1 514 aa10□□□□□ -0.81
VPS13D-205ENST00000473099 RBFOX3A6NFN3 312 aa10□□□□□ -0.81
VPS13D-205ENST00000473099 DNAJC9-AS1A6NH13 148 aa10□□□□□ -0.81
VPS13D-205ENST00000473099 HYPMO75409 117 aa10□□□□□ -0.81
VPS13D-205ENST00000473099 IGHG4P01861 327 aa10□□□□□ -0.81
VPS13D-205ENST00000473099 CD5P06127 495 aa10□□□□□ -0.81
VPS13D-205ENST00000473099 C8orf88P0DMB2 117 aa10□□□□□ -0.81
VPS13D-205ENST00000473099 PSG1P11464 419 aa10□□□□□ -0.81
VPS13D-205ENST00000473099 TPPP2P59282 170 aa10□□□□□ -0.81
VPS13D-205ENST00000473099 SSX7Q7RTT5 188 aa10□□□□□ -0.81
VPS13D-205ENST00000473099 STXBP6Q8NFX7 210 aa10□□□□□ -0.81
VPS13D-205ENST00000473099 NOL4LQ96MY1 436 aaPredicted RBP10□□□□□ -0.81
VPS13D-205ENST00000473099 JMJD8Q96S16 334 aa10□□□□□ -0.81
VPS13D-205ENST00000473099 TXNDC17Q9BRA2 123 aa10□□□□□ -0.81
VPS13D-205ENST00000473099 ZNF702PQ9H963 129 aa10□□□□□ -0.81
VPS13D-205ENST00000473099 TREM1Q9NP99 234 aa10□□□□□ -0.81
VPS13D-205ENST00000473099 ARL2-SNX15V9GYD0 113 aa10□□□□□ -0.81
VPS13D-205ENST00000473099 SVEP1Q4LDE5 3571 aa9.99□□□□□ -0.81
VPS13D-205ENST00000473099 A0A1B0GV50 99 aa9.99□□□□□ -0.81
VPS13D-205ENST00000473099 F8W735 103 aaPredicted RBP9.99□□□□□ -0.81
VPS13D-205ENST00000473099 OR2C1O95371 312 aa9.99□□□□□ -0.81
VPS13D-205ENST00000473099 BCL2P10415 239 aa9.99□□□□□ -0.81
VPS13D-205ENST00000473099 PF4V1P10720 104 aa9.99□□□□□ -0.81
VPS13D-205ENST00000473099 ZP3P21754 424 aa9.99□□□□□ -0.81
VPS13D-205ENST00000473099 FGF8P55075 233 aaPredicted RBP9.99□□□□□ -0.81
VPS13D-205ENST00000473099 TOR2AQ5JU69 321 aa9.99□□□□□ -0.81
VPS13D-205ENST00000473099 ZNF506Q5JVG8 444 aa9.99□□□□□ -0.81
VPS13D-205ENST00000473099 ZNF600Q6ZNG1 722 aa9.99□□□□□ -0.81
VPS13D-205ENST00000473099 Q6ZS46 218 aa9.99□□□□□ -0.81
VPS13D-205ENST00000473099 TMEM37Q8WXS4 190 aa9.99□□□□□ -0.81
VPS13D-205ENST00000473099 MS4A10Q96PG2 267 aa9.99□□□□□ -0.81
VPS13D-205ENST00000473099 SEPSECSQ9HD40 501 aaKnown RBP9.99□□□□□ -0.81
VPS13D-205ENST00000473099 TMEM167BQ9NRX6 74 aa9.99□□□□□ -0.81
VPS13D-205ENST00000473099 GNG13Q9P2W3 67 aa9.99□□□□□ -0.81
VPS13D-205ENST00000473099 LINC00527Q9UJ94 153 aa9.99□□□□□ -0.81
VPS13D-205ENST00000473099 HIGD1AQ9Y241 93 aa9.99□□□□□ -0.81
VPS13D-205ENST00000473099 LOC102723971A0A1B0GUV8 181 aa9.98□□□□□ -0.81
VPS13D-205ENST00000473099 WI2-2373I1.2A0A1W2PRP0 233 aa9.98□□□□□ -0.81
VPS13D-205ENST00000473099 HSPB1P04792 205 aaKnown RBP9.98□□□□□ -0.81
VPS13D-205ENST00000473099 ELANEP08246 267 aa9.98□□□□□ -0.81
VPS13D-205ENST00000473099 CTSGP08311 255 aa9.98□□□□□ -0.81
VPS13D-205ENST00000473099 ARL14EPLP0DKL9 152 aa9.98□□□□□ -0.81
VPS13D-205ENST00000473099 ORM2P19652 201 aa9.98□□□□□ -0.81
VPS13D-205ENST00000473099 LYZP61626 148 aa9.98□□□□□ -0.81
VPS13D-205ENST00000473099 CCL20P78556 96 aa9.98□□□□□ -0.81
VPS13D-205ENST00000473099 RELQ04864 619 aaPredicted RBP9.98□□□□□ -0.81
VPS13D-205ENST00000473099 OR1B1Q8NGR6 318 aa9.98□□□□□ -0.81
VPS13D-205ENST00000473099 SUN5Q8TC36 379 aa9.98□□□□□ -0.81
VPS13D-205ENST00000473099 RNF125Q96EQ8 232 aa9.98□□□□□ -0.81
VPS13D-205ENST00000473099 NARS2Q96I59 477 aaKnown RBP9.98□□□□□ -0.81
VPS13D-205ENST00000473099 SCRT1Q9BWW7 348 aa9.98□□□□□ -0.81
VPS13D-205ENST00000473099 GSX1Q9H4S2 264 aaPredicted RBP9.98□□□□□ -0.81
VPS13D-205ENST00000473099 VAX2Q9UIW0 290 aa9.98□□□□□ -0.81
VPS13D-205ENST00000473099 TMEM218A2RU14 115 aa9.97□□□□□ -0.81
VPS13D-205ENST00000473099 OR2T8A6NH00 312 aa9.97□□□□□ -0.81
VPS13D-205ENST00000473099 HMGB3O15347 200 aaKnown RBP9.97□□□□□ -0.81
VPS13D-205ENST00000473099 TGOLN2O43493 480 aa9.97□□□□□ -0.81
VPS13D-205ENST00000473099 CRYBA1P05813 215 aa9.97□□□□□ -0.81
VPS13D-205ENST00000473099 RNASE1P07998 156 aaKnown RBP9.97□□□□□ -0.81
VPS13D-205ENST00000473099 PSMB8P28062 276 aa9.97□□□□□ -0.81
VPS13D-205ENST00000473099 GCHFRP30047 84 aa9.97□□□□□ -0.81
VPS13D-205ENST00000473099 GPR183P32249 361 aa9.97□□□□□ -0.81
VPS13D-205ENST00000473099 RAB9AP51151 201 aa9.97□□□□□ -0.81
VPS13D-205ENST00000473099 FOXE3Q13461 319 aa9.97□□□□□ -0.81
VPS13D-205ENST00000473099 HAGHQ16775 308 aa9.97□□□□□ -0.81
VPS13D-205ENST00000473099 KRTAP21-3Q3LHN1 58 aa9.97□□□□□ -0.81
VPS13D-205ENST00000473099 TEX38Q6PEX7 206 aa9.97□□□□□ -0.81
VPS13D-205ENST00000473099 MIR17HGQ75NE6 70 aa9.97□□□□□ -0.81
VPS13D-205ENST00000473099 LINC00305Q7Z4B0 112 aa9.97□□□□□ -0.81
VPS13D-205ENST00000473099 IQCF2Q8IXL9 164 aa9.97□□□□□ -0.81
VPS13D-205ENST00000473099 ZNF491Q8N8L2 437 aa9.97□□□□□ -0.81
VPS13D-205ENST00000473099 CCDC140Q96MF4 163 aa9.97□□□□□ -0.81
VPS13D-205ENST00000473099 DOK5Q9P104 306 aa9.97□□□□□ -0.81
VPS13D-205ENST00000473099 S4R3C0 116 aa9.97□□□□□ -0.81
VPS13D-205ENST00000473099 BMPR1BO00238 502 aa9.96□□□□□ -0.82
VPS13D-205ENST00000473099 OR7C2O60412 319 aa9.96□□□□□ -0.82
VPS13D-205ENST00000473099 IL4P05112 153 aa9.96□□□□□ -0.82
VPS13D-205ENST00000473099 CLEC3BP05452 202 aa9.96□□□□□ -0.82
VPS13D-205ENST00000473099 HILS1P60008 231 aa9.96□□□□□ -0.82
VPS13D-205ENST00000473099 SPATA31B1PQ5VZV4 182 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms