RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 GLMPQ8WWB7 406 aa8.8□□□□□ -1
SYNE1-221ENST00000472563 MAGT1Q9H0U3 335 aa8.8□□□□□ -1
SYNE1-221ENST00000472563 FLVCR2Q9UPI3 526 aa8.8□□□□□ -1
SYNE1-221ENST00000472563 CSMD3Q7Z407 3707 aa8.8□□□□□ -1
SYNE1-221ENST00000472563 IGKV1D-37A0A075B6S9 117 aa8.79□□□□□ -1
SYNE1-221ENST00000472563 ZFP92A6NM28 416 aa8.79□□□□□ -1
SYNE1-221ENST00000472563 BUB3O43684 328 aa8.79□□□□□ -1
SYNE1-221ENST00000472563 ADAP1O75689 374 aa8.79□□□□□ -1
SYNE1-221ENST00000472563 FABP1P07148 127 aa8.79□□□□□ -1
SYNE1-221ENST00000472563 OR4E1P0C645 316 aa8.79□□□□□ -1
SYNE1-221ENST00000472563 ATF4P18848 351 aaPredicted RBP8.79□□□□□ -1
SYNE1-221ENST00000472563 NUP62P37198 522 aaPredicted RBP8.79□□□□□ -1
SYNE1-221ENST00000472563 ID3Q02535 119 aa8.79□□□□□ -1
SYNE1-221ENST00000472563 DHRS2Q13268 280 aa8.79□□□□□ -1
SYNE1-221ENST00000472563 PLECQ15149 4684 aaKnown RBP8.79□□□□□ -1
SYNE1-221ENST00000472563 CNPY1Q3B7I2 92 aa8.79□□□□□ -1
SYNE1-221ENST00000472563 LEMD1Q68G75 181 aa8.79□□□□□ -1
SYNE1-221ENST00000472563 OR8G2PQ6IF36 304 aa8.79□□□□□ -1
SYNE1-221ENST00000472563 LYG2Q86SG7 212 aa8.79□□□□□ -1
SYNE1-221ENST00000472563 GATAD1Q8WUU5 269 aa8.79□□□□□ -1
SYNE1-221ENST00000472563 RNF125Q96EQ8 232 aa8.79□□□□□ -1
SYNE1-221ENST00000472563 PFDN2Q9UHV9 154 aa8.79□□□□□ -1
SYNE1-221ENST00000472563 A0A0J9YWU9 116 aa8.78□□□□□ -1
SYNE1-221ENST00000472563 WRBO00258 174 aa8.78□□□□□ -1
SYNE1-221ENST00000472563 IFNA21P01568 189 aa8.78□□□□□ -1
SYNE1-221ENST00000472563 ZNF688P0C7X2 276 aa8.78□□□□□ -1
SYNE1-221ENST00000472563 ANXA7P20073 488 aaKnown RBP8.78□□□□□ -1
SYNE1-221ENST00000472563 ZNF90Q03938 601 aa8.78□□□□□ -1
SYNE1-221ENST00000472563 C4orf46Q504U0 113 aa8.78□□□□□ -1
SYNE1-221ENST00000472563 TRGV9Q99603 122 aa8.78□□□□□ -1
SYNE1-221ENST00000472563 SEPSECSQ9HD40 501 aaKnown RBP8.78□□□□□ -1
SYNE1-221ENST00000472563 PAIP2BQ9ULR5 123 aaKnown RBP8.78□□□□□ -1
SYNE1-221ENST00000472563 SNRPGP15A8MWD9 76 aa8.77□□□□□ -1.01
SYNE1-221ENST00000472563 PRSS46E5RG02 174 aa8.77□□□□□ -1.01
SYNE1-221ENST00000472563 PLA2G10O15496 165 aa8.77□□□□□ -1.01
SYNE1-221ENST00000472563 C1orf194Q5T5A4 169 aa8.77□□□□□ -1.01
SYNE1-221ENST00000472563 SIGLEC15Q6ZMC9 328 aa8.77□□□□□ -1.01
SYNE1-221ENST00000472563 LINC00299Q6ZSB3 139 aa8.77□□□□□ -1.01
SYNE1-221ENST00000472563 TRPT1Q86TN4 253 aaKnown RBP8.77□□□□□ -1.01
SYNE1-221ENST00000472563 STHQ8IWL8 128 aa8.77□□□□□ -1.01
SYNE1-221ENST00000472563 TMEM217Q8N7C4 229 aa8.77□□□□□ -1.01
SYNE1-221ENST00000472563 THAP8Q8NA92 274 aa8.77□□□□□ -1.01
SYNE1-221ENST00000472563 PBDC1Q9BVG4 233 aa8.77□□□□□ -1.01
SYNE1-221ENST00000472563 NRN1Q9NPD7 142 aa8.77□□□□□ -1.01
SYNE1-221ENST00000472563 STRAPQ9Y3F4 350 aaKnown RBP8.77□□□□□ -1.01
SYNE1-221ENST00000472563 IGKV1OR2-108A0A075B7D4 117 aa8.76□□□□□ -1.01
SYNE1-221ENST00000472563 LYRM1O43325 122 aa8.76□□□□□ -1.01
SYNE1-221ENST00000472563 CFDP00746 253 aaPredicted RBP8.76□□□□□ -1.01
SYNE1-221ENST00000472563 CA1P00915 261 aaPredicted RBP8.76□□□□□ -1.01
SYNE1-221ENST00000472563 NKX2-1P43699 371 aaPredicted RBP8.76□□□□□ -1.01
SYNE1-221ENST00000472563 POLR2GP62487 172 aaKnown RBP eCLIP8.76□□□□□ -1.01
SYNE1-221ENST00000472563 EWSR1Q01844 656 aaKnown RBP eCLIP8.76□□□□□ -1.01
SYNE1-221ENST00000472563 SPANXN5Q5MJ07 72 aa8.76□□□□□ -1.01
SYNE1-221ENST00000472563 OR4D5Q8NGN0 318 aa8.76□□□□□ -1.01
SYNE1-221ENST00000472563 MITD1Q8WV92 249 aa8.76□□□□□ -1.01
SYNE1-221ENST00000472563 RARRES2Q99969 163 aa8.76□□□□□ -1.01
SYNE1-221ENST00000472563 KNCNA6PVL3 124 aa8.75□□□□□ -1.01
SYNE1-221ENST00000472563 SPP1P10451 314 aa8.75□□□□□ -1.01
SYNE1-221ENST00000472563 LYZP61626 148 aa8.75□□□□□ -1.01
SYNE1-221ENST00000472563 SNRPD3P62318 126 aaKnown RBP8.75□□□□□ -1.01
SYNE1-221ENST00000472563 OR2F1Q13607 317 aa8.75□□□□□ -1.01
SYNE1-221ENST00000472563 TMEM41BQ5BJD5 291 aa8.75□□□□□ -1.01
SYNE1-221ENST00000472563 PSMG4Q5JS54 123 aa8.75□□□□□ -1.01
SYNE1-221ENST00000472563 MORN3Q6PF18 240 aaPredicted RBP8.75□□□□□ -1.01
SYNE1-221ENST00000472563 SMIM8Q96KF7 97 aa8.75□□□□□ -1.01
SYNE1-221ENST00000472563 RAB40CQ96S21 281 aa8.75□□□□□ -1.01
SYNE1-221ENST00000472563 FBXL17Q9UF56 701 aa8.75□□□□□ -1.01
SYNE1-221ENST00000472563 DNAH1Q9P2D7 4330 aa8.75□□□□□ -1.01
SYNE1-221ENST00000472563 CXorf65A6NEN9 183 aa8.74□□□□□ -1.01
SYNE1-221ENST00000472563 H3BP45 60 aa8.74□□□□□ -1.01
SYNE1-221ENST00000472563 JTBO76095 146 aa8.74□□□□□ -1.01
SYNE1-221ENST00000472563 GIG44P09565 113 aaPredicted RBP8.74□□□□□ -1.01
SYNE1-221ENST00000472563 IAH1Q2TAA2 248 aaPredicted RBP8.74□□□□□ -1.01
SYNE1-221ENST00000472563 ACTL10Q5JWF8 245 aa8.74□□□□□ -1.01
SYNE1-221ENST00000472563 OR11H2Q8NH07 326 aa8.74□□□□□ -1.01
SYNE1-221ENST00000472563 CCDC32Q9BV29 185 aa8.74□□□□□ -1.01
SYNE1-221ENST00000472563 C20orf85Q9H1P6 137 aa8.74□□□□□ -1.01
SYNE1-221ENST00000472563 C11orf68Q9H3H3 251 aaKnown RBP8.74□□□□□ -1.01
SYNE1-221ENST00000472563 PSENENQ9NZ42 101 aa8.74□□□□□ -1.01
SYNE1-221ENST00000472563 SLC45A2Q9UMX9 530 aa8.74□□□□□ -1.01
SYNE1-221ENST00000472563 HYDINQ4G0P3 5121 aa8.73□□□□□ -1.01
SYNE1-221ENST00000472563 SSSCA1O60232 199 aa8.73□□□□□ -1.01
SYNE1-221ENST00000472563 TCRBP04435 133 aa8.73□□□□□ -1.01
SYNE1-221ENST00000472563 PAX9P55771 341 aa8.73□□□□□ -1.01
SYNE1-221ENST00000472563 TAS2R30P59541 319 aa8.73□□□□□ -1.01
SYNE1-221ENST00000472563 ACOT7LQ6ZUV0 252 aa8.73□□□□□ -1.01
SYNE1-221ENST00000472563 TMEM144Q7Z5S9 345 aa8.73□□□□□ -1.01
SYNE1-221ENST00000472563 ZBTB8BQ8NAP8 495 aaPredicted RBP8.73□□□□□ -1.01
SYNE1-221ENST00000472563 LYSTQ99698 3801 aa8.73□□□□□ -1.01
SYNE1-221ENST00000472563 NUPR2A6NF83 97 aa8.72□□□□□ -1.01
SYNE1-221ENST00000472563 PMS2P5A8MQ11 134 aa8.72□□□□□ -1.01
SYNE1-221ENST00000472563 AKR1C1Q04828 323 aa8.72□□□□□ -1.01
SYNE1-221ENST00000472563 PMS2P11Q13670 270 aa8.72□□□□□ -1.01
SYNE1-221ENST00000472563 CEMP1Q6PRD7 247 aaPredicted RBP8.72□□□□□ -1.01
SYNE1-221ENST00000472563 TMEM14EPQ6UXP3 125 aa8.72□□□□□ -1.01
SYNE1-221ENST00000472563 OR8I2Q8N0Y5 310 aa8.72□□□□□ -1.01
SYNE1-221ENST00000472563 BPIFCQ8NFQ6 507 aa8.72□□□□□ -1.01
SYNE1-221ENST00000472563 PPP1R14BQ96C90 147 aa8.72□□□□□ -1.01
SYNE1-221ENST00000472563 NUDT15Q9NV35 164 aa8.72□□□□□ -1.01
SYNE1-221ENST00000472563 GSKIPQ9P0R6 139 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms