RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 CCR6P51684 374 aa12.65□□□□□ -0.38
COL7A1-208ENST00000470076 SIGLEC15Q6ZMC9 328 aa12.65□□□□□ -0.38
COL7A1-208ENST00000470076 HSPB7Q9UBY9 170 aa12.65□□□□□ -0.38
COL7A1-208ENST00000470076 ELOA3CA0A087WX78 387 aaPredicted RBP12.64□□□□□ -0.39
COL7A1-208ENST00000470076 A0A0B4J2A0 478 aa12.64□□□□□ -0.39
COL7A1-208ENST00000470076 PSG1P11464 419 aa12.64□□□□□ -0.39
COL7A1-208ENST00000470076 NUP62P37198 522 aaPredicted RBP12.64□□□□□ -0.39
COL7A1-208ENST00000470076 ATP5IP56385 69 aaPredicted RBP12.64□□□□□ -0.39
COL7A1-208ENST00000470076 Q6ZTC4 211 aa12.64□□□□□ -0.39
COL7A1-208ENST00000470076 DTD1Q8TEA8 209 aa12.64□□□□□ -0.39
COL7A1-208ENST00000470076 RAB2BQ8WUD1 216 aa12.64□□□□□ -0.39
COL7A1-208ENST00000470076 CCDC59Q9P031 241 aaKnown RBP12.64□□□□□ -0.39
COL7A1-208ENST00000470076 RSL24D1Q9UHA3 163 aaKnown RBP12.64□□□□□ -0.39
COL7A1-208ENST00000470076 SHPKQ9UHJ6 478 aa12.64□□□□□ -0.39
COL7A1-208ENST00000470076 PFDN2Q9UHV9 154 aa12.64□□□□□ -0.39
COL7A1-208ENST00000470076 HECTD4Q9Y4D8 3996 aa12.63□□□□□ -0.39
COL7A1-208ENST00000470076 KLF9Q13886 244 aaPredicted RBP12.63□□□□□ -0.39
COL7A1-208ENST00000470076 SMCO1Q147U7 214 aa12.63□□□□□ -0.39
COL7A1-208ENST00000470076 LGI3Q8N145 548 aa12.63□□□□□ -0.39
COL7A1-208ENST00000470076 OR51G1Q8NGK1 321 aa12.63□□□□□ -0.39
COL7A1-208ENST00000470076 DYNC2LI1Q8TCX1 351 aa12.63□□□□□ -0.39
COL7A1-208ENST00000470076 BCL7BQ9BQE9 202 aa12.63□□□□□ -0.39
COL7A1-208ENST00000470076 PRR13Q9NZ81 148 aa12.63□□□□□ -0.39
COL7A1-208ENST00000470076 PIGBOS1A0A0B4J2F0 54 aa12.62□□□□□ -0.39
COL7A1-208ENST00000470076 H3BMM0 161 aa12.62□□□□□ -0.39
COL7A1-208ENST00000470076 ANXA3P12429 323 aa12.62□□□□□ -0.39
COL7A1-208ENST00000470076 SRPXP78539 464 aa12.62□□□□□ -0.39
COL7A1-208ENST00000470076 LYZL2Q7Z4W2 148 aa12.62□□□□□ -0.39
COL7A1-208ENST00000470076 RNF125Q96EQ8 232 aa12.62□□□□□ -0.39
COL7A1-208ENST00000470076 RBKSQ9H477 322 aa12.62□□□□□ -0.39
COL7A1-208ENST00000470076 MCUBQ9NWR8 336 aa12.62□□□□□ -0.39
COL7A1-208ENST00000470076 IGHV4-4A0A075B6R2 117 aa12.61□□□□□ -0.39
COL7A1-208ENST00000470076 HLA-DRB4P13762 266 aa12.61□□□□□ -0.39
COL7A1-208ENST00000470076 AKR1C4P17516 323 aa12.61□□□□□ -0.39
COL7A1-208ENST00000470076 NKX2-1P43699 371 aaPredicted RBP12.61□□□□□ -0.39
COL7A1-208ENST00000470076 TMBIM6P55061 237 aa12.61□□□□□ -0.39
COL7A1-208ENST00000470076 SUPT4H1P63272 117 aaKnown RBP12.61□□□□□ -0.39
COL7A1-208ENST00000470076 OR8G2PQ6IF36 304 aa12.61□□□□□ -0.39
COL7A1-208ENST00000470076 RNF126Q9BV68 326 aa12.61□□□□□ -0.39
COL7A1-208ENST00000470076 XCL2Q9UBD3 114 aa12.61□□□□□ -0.39
COL7A1-208ENST00000470076 HLA-DRB4X5D2U9 266 aa12.61□□□□□ -0.39
COL7A1-208ENST00000470076 ZFP92A6NM28 416 aa12.6□□□□□ -0.39
COL7A1-208ENST00000470076 GPX4P36969 197 aaPredicted RBP12.6□□□□□ -0.39
COL7A1-208ENST00000470076 SLC35E1Q96K37 410 aa12.6□□□□□ -0.39
COL7A1-208ENST00000470076 PBDC1Q9BVG4 233 aa12.6□□□□□ -0.39
COL7A1-208ENST00000470076 CELA1Q9UNI1 258 aa12.6□□□□□ -0.39
COL7A1-208ENST00000470076 FABP1P07148 127 aa12.59□□□□□ -0.39
COL7A1-208ENST00000470076 GAMTQ14353 236 aa12.59□□□□□ -0.39
COL7A1-208ENST00000470076 OR1S1Q8NH92 325 aa12.59□□□□□ -0.39
COL7A1-208ENST00000470076 DEFB131BA0A096LNP1 70 aa12.58□□□□□ -0.4
COL7A1-208ENST00000470076 DUXBA0A1W2PPF3 345 aa12.58□□□□□ -0.4
COL7A1-208ENST00000470076 FABP12A6NFH5 140 aa12.58□□□□□ -0.4
COL7A1-208ENST00000470076 AMBPP02760 352 aa12.58□□□□□ -0.4
COL7A1-208ENST00000470076 ID1P41134 155 aa12.58□□□□□ -0.4
COL7A1-208ENST00000470076 ZNF90Q03938 601 aa12.58□□□□□ -0.4
COL7A1-208ENST00000470076 C12orf74Q32Q52 190 aa12.58□□□□□ -0.4
COL7A1-208ENST00000470076 C1orf194Q5T5A4 169 aa12.58□□□□□ -0.4
COL7A1-208ENST00000470076 NEU1Q99519 415 aa12.58□□□□□ -0.4
COL7A1-208ENST00000470076 SOSTQ9BQB4 213 aa12.58□□□□□ -0.4
COL7A1-208ENST00000470076 SLIRPQ9GZT3 109 aaKnown RBP12.58□□□□□ -0.4
COL7A1-208ENST00000470076 HERC2O95714 4834 aa12.58□□□□□ -0.4
COL7A1-208ENST00000470076 IGKV1D-37A0A075B6S9 117 aa12.57□□□□□ -0.4
COL7A1-208ENST00000470076 SNRPGP15A8MWD9 76 aa12.57□□□□□ -0.4
COL7A1-208ENST00000470076 TNFSF8P32971 234 aa12.57□□□□□ -0.4
COL7A1-208ENST00000470076 FAUP35544 74 aaKnown RBP12.57□□□□□ -0.4
COL7A1-208ENST00000470076 ZNF705AQ6ZN79 300 aaPredicted RBP12.57□□□□□ -0.4
COL7A1-208ENST00000470076 SMIM9A6NGZ8 99 aa12.56□□□□□ -0.4
COL7A1-208ENST00000470076 ZNF705FA8MVS1 300 aaPredicted RBP12.56□□□□□ -0.4
COL7A1-208ENST00000470076 NOL3O60936 208 aaKnown RBP12.56□□□□□ -0.4
COL7A1-208ENST00000470076 PITX3O75364 302 aa12.56□□□□□ -0.4
COL7A1-208ENST00000470076 ZNF705DP0CH99 300 aaPredicted RBP12.56□□□□□ -0.4
COL7A1-208ENST00000470076 ZNF705BP0CI00 300 aaPredicted RBP12.56□□□□□ -0.4
COL7A1-208ENST00000470076 PSMB3P49720 205 aa12.56□□□□□ -0.4
COL7A1-208ENST00000470076 RAB11AP62491 216 aa12.56□□□□□ -0.4
COL7A1-208ENST00000470076 TMEM128Q5BJH2 165 aa12.56□□□□□ -0.4
COL7A1-208ENST00000470076 GDF5OSQ5U4N7 250 aa12.56□□□□□ -0.4
COL7A1-208ENST00000470076 FOXI2Q6ZQN5 318 aa12.56□□□□□ -0.4
COL7A1-208ENST00000470076 ZNF767PQ75MW2 155 aa12.56□□□□□ -0.4
COL7A1-208ENST00000470076 LINC00052Q96N35 136 aa12.56□□□□□ -0.4
COL7A1-208ENST00000470076 CLUHP3Q96NS8 147 aa12.56□□□□□ -0.4
COL7A1-208ENST00000470076 WDR12Q9GZL7 423 aaKnown RBP12.56□□□□□ -0.4
COL7A1-208ENST00000470076 SAV1Q9H4B6 383 aaPredicted RBP12.56□□□□□ -0.4
COL7A1-208ENST00000470076 TMEM189A5PLL7 270 aa12.55□□□□□ -0.4
COL7A1-208ENST00000470076 AP3S2P59780 193 aa12.55□□□□□ -0.4
COL7A1-208ENST00000470076 LYZP61626 148 aa12.55□□□□□ -0.4
COL7A1-208ENST00000470076 SPATA31B1PQ5VZV4 182 aa12.55□□□□□ -0.4
COL7A1-208ENST00000470076 COQ8AQ8NI60 647 aa12.55□□□□□ -0.4
COL7A1-208ENST00000470076 TRGV9Q99603 122 aa12.55□□□□□ -0.4
COL7A1-208ENST00000470076 NDUFAF3Q9BU61 184 aa12.55□□□□□ -0.4
COL7A1-208ENST00000470076 SOCS3O14543 225 aa12.54□□□□□ -0.4
COL7A1-208ENST00000470076 IGKV3-20P01619 116 aa12.54□□□□□ -0.4
COL7A1-208ENST00000470076 SPART-AS1P0CW21 52 aa12.54□□□□□ -0.4
COL7A1-208ENST00000470076 P0DMU3 169 aa12.54□□□□□ -0.4
COL7A1-208ENST00000470076 FAM231AP0DMU4 169 aa12.54□□□□□ -0.4
COL7A1-208ENST00000470076 FAM231CP0DMU5 169 aa12.54□□□□□ -0.4
COL7A1-208ENST00000470076 SLC25A6P12236 298 aa12.54□□□□□ -0.4
COL7A1-208ENST00000470076 SAMD13Q5VXD3 122 aa12.54□□□□□ -0.4
COL7A1-208ENST00000470076 TMED4Q7Z7H5 227 aa12.54□□□□□ -0.4
COL7A1-208ENST00000470076 LRTM2Q8N967 370 aa12.54□□□□□ -0.4
COL7A1-208ENST00000470076 MCFD2Q8NI22 146 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 573.1 ms