RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 HEXA-AS1Q9H8Q6 139 aa3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 ZNF286AQ9HBT8 521 aa3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 FAM60AQ9NP50 221 aa3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 TAC3Q9UHF0 121 aa3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 AP4S1Q9Y587 144 aa3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 ARAP3Q8WWN8 1544 aa3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 QRICH2Q9H0J4 1663 aa3.43□□□□□ -1.86
CCDC88A-210ENST00000468534 KDM5CP41229 1560 aa3.43□□□□□ -1.86
CCDC88A-210ENST00000468534 NRKQ7Z2Y5 1582 aa3.43□□□□□ -1.86
CCDC88A-210ENST00000468534 DICER1Q9UPY3 1922 aaKnown RBP3.43□□□□□ -1.86
CCDC88A-210ENST00000468534 C3orf85A0A1B0GTC6 90 aa3.43□□□□□ -1.86
CCDC88A-210ENST00000468534 C9JCJ5 164 aa3.43□□□□□ -1.86
CCDC88A-210ENST00000468534 HRASP01112 189 aa3.43□□□□□ -1.86
CCDC88A-210ENST00000468534 MT-ATP8P03928 68 aa3.43□□□□□ -1.86
CCDC88A-210ENST00000468534 ZNF136P52737 540 aa3.43□□□□□ -1.86
CCDC88A-210ENST00000468534 ARPP19P56211 112 aa3.43□□□□□ -1.86
CCDC88A-210ENST00000468534 FGF12P61328 243 aa3.43□□□□□ -1.86
CCDC88A-210ENST00000468534 AKR1C1Q04828 323 aa3.43□□□□□ -1.86
CCDC88A-210ENST00000468534 LGALS9BQ3B8N2 356 aa3.43□□□□□ -1.86
CCDC88A-210ENST00000468534 TDRG1Q3Y452 100 aa3.43□□□□□ -1.86
CCDC88A-210ENST00000468534 LAIR2Q6ISS4 152 aa3.43□□□□□ -1.86
CCDC88A-210ENST00000468534 SCXQ7RTU7 201 aa3.43□□□□□ -1.86
CCDC88A-210ENST00000468534 PCP2Q8IVA1 136 aa3.43□□□□□ -1.86
CCDC88A-210ENST00000468534 C10orf111Q8N326 155 aa3.43□□□□□ -1.86
CCDC88A-210ENST00000468534 OR8A1Q8NGG7 326 aa3.43□□□□□ -1.86
CCDC88A-210ENST00000468534 AQP10Q96PS8 301 aa3.43□□□□□ -1.86
CCDC88A-210ENST00000468534 KRTAP4-3Q9BYR4 195 aa3.43□□□□□ -1.86
CCDC88A-210ENST00000468534 TMEM106BQ9NUM4 274 aa3.43□□□□□ -1.86
CCDC88A-210ENST00000468534 RTEL1-TNFRSF6BF6WH68 1400 aa3.43□□□□□ -1.86
CCDC88A-210ENST00000468534 ATG2AQ2TAZ0 1938 aa3.42□□□□□ -1.86
CCDC88A-210ENST00000468534 SETD1AO15047 1707 aaKnown RBP3.42□□□□□ -1.86
CCDC88A-210ENST00000468534 TMEM131LA2VDJ0 1609 aa3.42□□□□□ -1.86
CCDC88A-210ENST00000468534 KMT2EQ8IZD2 1858 aa3.42□□□□□ -1.86
CCDC88A-210ENST00000468534 NUP210Q8TEM1 1887 aaPredicted RBP3.42□□□□□ -1.86
CCDC88A-210ENST00000468534 DOCK5Q9H7D0 1870 aa3.42□□□□□ -1.86
CCDC88A-210ENST00000468534 IGLV7-46A0A075B6I9 117 aa3.42□□□□□ -1.86
CCDC88A-210ENST00000468534 IGLV4-3A0A075B6K6 122 aa3.42□□□□□ -1.86
CCDC88A-210ENST00000468534 IGHV3OR16-10A0A075B7F0 116 aa3.42□□□□□ -1.86
CCDC88A-210ENST00000468534 TRAV19A0A0A6YYK7 116 aa3.42□□□□□ -1.86
CCDC88A-210ENST00000468534 APOC4-APOC2K7ER74 178 aa3.42□□□□□ -1.86
CCDC88A-210ENST00000468534 M0R2P5 195 aa3.42□□□□□ -1.86
CCDC88A-210ENST00000468534 DUSP14O95147 198 aaKnown RBP3.42□□□□□ -1.86
CCDC88A-210ENST00000468534 APOC2P02655 101 aa3.42□□□□□ -1.86
CCDC88A-210ENST00000468534 CD7P09564 240 aa3.42□□□□□ -1.86
CCDC88A-210ENST00000468534 SEC11BP0C7V7 166 aa3.42□□□□□ -1.86
CCDC88A-210ENST00000468534 KRTAP12-2P59991 146 aa3.42□□□□□ -1.86
CCDC88A-210ENST00000468534 Q0VG73 95 aa3.42□□□□□ -1.86
CCDC88A-210ENST00000468534 C9orf66Q5T8R8 295 aa3.42□□□□□ -1.86
CCDC88A-210ENST00000468534 LCE3AQ5TA76 89 aa3.42□□□□□ -1.86
CCDC88A-210ENST00000468534 LINC01545Q5VT33 79 aa3.42□□□□□ -1.86
CCDC88A-210ENST00000468534 CEMP1Q6PRD7 247 aaPredicted RBP3.42□□□□□ -1.86
CCDC88A-210ENST00000468534 C2orf15Q8WU43 125 aaKnown RBP3.42□□□□□ -1.86
CCDC88A-210ENST00000468534 COPS9Q8WXC6 57 aa3.42□□□□□ -1.86
CCDC88A-210ENST00000468534 RNASE6Q93091 150 aaKnown RBP3.42□□□□□ -1.86
CCDC88A-210ENST00000468534 MCEEQ96PE7 176 aa3.42□□□□□ -1.86
CCDC88A-210ENST00000468534 LINC00597Q9H2U6 94 aa3.42□□□□□ -1.86
CCDC88A-210ENST00000468534 Q9H3A6 140 aa3.42□□□□□ -1.86
CCDC88A-210ENST00000468534 MYH7P12883 1935 aa3.42□□□□□ -1.86
CCDC88A-210ENST00000468534 CASZ1Q86V15 1759 aa3.41□□□□□ -1.86
CCDC88A-210ENST00000468534 ABCC3O15438 1527 aa3.41□□□□□ -1.86
CCDC88A-210ENST00000468534 FER1L5A0AVI2 2057 aa3.41□□□□□ -1.86
CCDC88A-210ENST00000468534 IGHV3-74A0A0B4J1X5 117 aa3.41□□□□□ -1.86
CCDC88A-210ENST00000468534 OOSP1A8MZH6 123 aa3.41□□□□□ -1.86
CCDC88A-210ENST00000468534 K7EP34 96 aa3.41□□□□□ -1.86
CCDC88A-210ENST00000468534 SYNGR2O43760 224 aa3.41□□□□□ -1.86
CCDC88A-210ENST00000468534 LY6G6DO95868 133 aa3.41□□□□□ -1.86
CCDC88A-210ENST00000468534 PRM2P04554 102 aa3.41□□□□□ -1.86
CCDC88A-210ENST00000468534 ZNF286BP0CG31 522 aa3.41□□□□□ -1.86
CCDC88A-210ENST00000468534 DYNLT3P51808 116 aa3.41□□□□□ -1.86
CCDC88A-210ENST00000468534 CRISP3P54108 245 aa3.41□□□□□ -1.86
CCDC88A-210ENST00000468534 UBE2BP63146 152 aa3.41□□□□□ -1.86
CCDC88A-210ENST00000468534 ATP5G2Q06055 141 aa3.41□□□□□ -1.86
CCDC88A-210ENST00000468534 FOXF1Q12946 379 aa3.41□□□□□ -1.86
CCDC88A-210ENST00000468534 LINC01554Q52M75 96 aa3.41□□□□□ -1.86
CCDC88A-210ENST00000468534 LGALS9CQ6DKI2 356 aa3.41□□□□□ -1.86
CCDC88A-210ENST00000468534 BPIFA4PQ86YQ2 179 aa3.41□□□□□ -1.86
CCDC88A-210ENST00000468534 SLC25A29Q8N8R3 303 aa3.41□□□□□ -1.86
CCDC88A-210ENST00000468534 MORN4Q8NDC4 146 aa3.41□□□□□ -1.86
CCDC88A-210ENST00000468534 RAB37Q96AX2 223 aa3.41□□□□□ -1.86
CCDC88A-210ENST00000468534 RBMXL1Q96E39 390 aaKnown RBP3.41□□□□□ -1.86
CCDC88A-210ENST00000468534 HIST1H2BLQ99880 126 aa3.41□□□□□ -1.86
CCDC88A-210ENST00000468534 ASF1BQ9NVP2 202 aa3.41□□□□□ -1.86
CCDC88A-210ENST00000468534 UQCR10Q9UDW1 63 aa3.41□□□□□ -1.86
CCDC88A-210ENST00000468534 SERP1Q9Y6X1 66 aa3.41□□□□□ -1.86
CCDC88A-210ENST00000468534 CDK5RAP2Q96SN8 1893 aa3.41□□□□□ -1.86
CCDC88A-210ENST00000468534 LRRK1Q38SD2 2015 aa3.41□□□□□ -1.86
CCDC88A-210ENST00000468534 TRBV20-1A0A075B6N2 111 aa3.4□□□□□ -1.87
CCDC88A-210ENST00000468534 IGKV1-9A0A0C4DH69 117 aa3.4□□□□□ -1.87
CCDC88A-210ENST00000468534 IGKV1-12A0A0C4DH73 117 aa3.4□□□□□ -1.87
CCDC88A-210ENST00000468534 A0A0D9SG52 128 aa3.4□□□□□ -1.87
CCDC88A-210ENST00000468534 MUC21A0A0G2JKD1 596 aa3.4□□□□□ -1.87
CCDC88A-210ENST00000468534 A0A1B0GW54 56 aa3.4□□□□□ -1.87
CCDC88A-210ENST00000468534 LOC107986453A0A1B0GWG9 222 aa3.4□□□□□ -1.87
CCDC88A-210ENST00000468534 A0A1W2PNU3 283 aaPredicted RBP3.4□□□□□ -1.87
CCDC88A-210ENST00000468534 H3BT86 120 aa3.4□□□□□ -1.87
CCDC88A-210ENST00000468534 PITX3O75364 302 aa3.4□□□□□ -1.87
CCDC88A-210ENST00000468534 NDUFB6O95139 128 aa3.4□□□□□ -1.87
CCDC88A-210ENST00000468534 GABARAPO95166 117 aa3.4□□□□□ -1.87
CCDC88A-210ENST00000468534 SOD1P00441 154 aa3.4□□□□□ -1.87
CCDC88A-210ENST00000468534 IGKV1D-12P01611 117 aa3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms