RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 MED28Q9H204 178 aa8.95□□□□□ -0.98
SQSTM1-206ENST00000466342 ZFAND3Q9H8U3 227 aa8.95□□□□□ -0.98
SQSTM1-206ENST00000466342 MRPL27Q9P0M9 148 aaKnown RBP8.95□□□□□ -0.98
SQSTM1-206ENST00000466342 PUS1Q9Y606 427 aaKnown RBP eCLIP8.95□□□□□ -0.98
SQSTM1-206ENST00000466342 IGHV3OR16-8A0A075B7F1 116 aa8.94□□□□□ -0.98
SQSTM1-206ENST00000466342 K7EMT4 169 aa8.94□□□□□ -0.98
SQSTM1-206ENST00000466342 DEDDO75618 318 aa8.94□□□□□ -0.98
SQSTM1-206ENST00000466342 CCNKO75909 580 aa8.94□□□□□ -0.98
SQSTM1-206ENST00000466342 YIF1AO95070 293 aa8.94□□□□□ -0.98
SQSTM1-206ENST00000466342 C8orf88P0DMB2 117 aa8.94□□□□□ -0.98
SQSTM1-206ENST00000466342 BCAP31P51572 246 aa8.94□□□□□ -0.98
SQSTM1-206ENST00000466342 YPEL3P61236 119 aaPredicted RBP8.94□□□□□ -0.98
SQSTM1-206ENST00000466342 LRRC37A5PQ49AS3 106 aa8.94□□□□□ -0.98
SQSTM1-206ENST00000466342 OR8G2PQ6IF36 304 aa8.94□□□□□ -0.98
SQSTM1-206ENST00000466342 TOMM20LQ6UXN7 152 aa8.94□□□□□ -0.98
SQSTM1-206ENST00000466342 ACOT7LQ6ZUV0 252 aa8.94□□□□□ -0.98
SQSTM1-206ENST00000466342 DYNLRB2Q8TF09 96 aa8.94□□□□□ -0.98
SQSTM1-206ENST00000466342 WDR89Q96FK6 387 aaPredicted RBP8.94□□□□□ -0.98
SQSTM1-206ENST00000466342 LYRM2Q9NU23 88 aaPredicted RBP8.94□□□□□ -0.98
SQSTM1-206ENST00000466342 IGKV1D-37A0A075B6S9 117 aa8.93□□□□□ -0.98
SQSTM1-206ENST00000466342 FAM24AA6NFZ4 105 aa8.93□□□□□ -0.98
SQSTM1-206ENST00000466342 ZFP92A6NM28 416 aa8.93□□□□□ -0.98
SQSTM1-206ENST00000466342 FNDC10F2Z333 226 aa8.93□□□□□ -0.98
SQSTM1-206ENST00000466342 SCAF4O95104 1147 aaKnown RBP8.93□□□□□ -0.98
SQSTM1-206ENST00000466342 RLN2P04090 185 aa8.93□□□□□ -0.98
SQSTM1-206ENST00000466342 CXCL3P19876 107 aa8.93□□□□□ -0.98
SQSTM1-206ENST00000466342 CAV2P51636 162 aa8.93□□□□□ -0.98
SQSTM1-206ENST00000466342 DLK1P80370 383 aa8.93□□□□□ -0.98
SQSTM1-206ENST00000466342 FCN2Q15485 313 aa8.93□□□□□ -0.98
SQSTM1-206ENST00000466342 DEFB114Q30KQ6 69 aa8.93□□□□□ -0.98
SQSTM1-206ENST00000466342 GTSCR1Q86UQ5 136 aa8.93□□□□□ -0.98
SQSTM1-206ENST00000466342 THAP8Q8NA92 274 aa8.93□□□□□ -0.98
SQSTM1-206ENST00000466342 OR11H7Q8NGC8 314 aa8.93□□□□□ -0.98
SQSTM1-206ENST00000466342 Q8WTZ3 238 aa8.93□□□□□ -0.98
SQSTM1-206ENST00000466342 PPP1R1CQ8WVI7 109 aa8.93□□□□□ -0.98
SQSTM1-206ENST00000466342 GINS3Q9BRX5 216 aa8.93□□□□□ -0.98
SQSTM1-206ENST00000466342 TECRQ9NZ01 308 aaKnown RBP8.93□□□□□ -0.98
SQSTM1-206ENST00000466342 IGKV1OR2-108A0A075B7D4 117 aa8.92□□□□□ -0.98
SQSTM1-206ENST00000466342 TRAV14DV4A0A0A6YYC5 116 aa8.92□□□□□ -0.98
SQSTM1-206ENST00000466342 E5RGE8 158 aa8.92□□□□□ -0.98
SQSTM1-206ENST00000466342 H0YIZ8 118 aa8.92□□□□□ -0.98
SQSTM1-206ENST00000466342 ZNF207O43670 478 aaKnown RBP8.92□□□□□ -0.98
SQSTM1-206ENST00000466342 TOMM40O96008 361 aa8.92□□□□□ -0.98
SQSTM1-206ENST00000466342 PET100P0DJ07 73 aa8.92□□□□□ -0.98
SQSTM1-206ENST00000466342 RRAS2P62070 204 aaPredicted RBP8.92□□□□□ -0.98
SQSTM1-206ENST00000466342 AKR1C1Q04828 323 aa8.92□□□□□ -0.98
SQSTM1-206ENST00000466342 ARL16Q0P5N6 197 aa8.92□□□□□ -0.98
SQSTM1-206ENST00000466342 CD300EQ496F6 205 aaPredicted RBP8.92□□□□□ -0.98
SQSTM1-206ENST00000466342 RPP25LQ8N5L8 163 aaKnown RBP8.92□□□□□ -0.98
SQSTM1-206ENST00000466342 TMEM252Q8N6L7 170 aa8.92□□□□□ -0.98
SQSTM1-206ENST00000466342 TRGV9Q99603 122 aa8.92□□□□□ -0.98
SQSTM1-206ENST00000466342 OR5AC2Q9NZP5 309 aa8.92□□□□□ -0.98
SQSTM1-206ENST00000466342 MLXQ9UH92 298 aa8.92□□□□□ -0.98
SQSTM1-206ENST00000466342 IGHV7-4-1A0A0J9YVY3 117 aa8.91□□□□□ -0.98
SQSTM1-206ENST00000466342 IGSF23A1L1A6 192 aa8.91□□□□□ -0.98
SQSTM1-206ENST00000466342 IZUMO1RA6ND01 250 aa8.91□□□□□ -0.98
SQSTM1-206ENST00000466342 CST7O76096 145 aa8.91□□□□□ -0.98
SQSTM1-206ENST00000466342 MPC2O95563 127 aa8.91□□□□□ -0.98
SQSTM1-206ENST00000466342 FABP1P07148 127 aa8.91□□□□□ -0.98
SQSTM1-206ENST00000466342 RD3LP0DJH9 198 aa8.91□□□□□ -0.98
SQSTM1-206ENST00000466342 PSG1P11464 419 aa8.91□□□□□ -0.98
SQSTM1-206ENST00000466342 P2RY1P47900 373 aa8.91□□□□□ -0.98
SQSTM1-206ENST00000466342 SULT1A1P50225 295 aa8.91□□□□□ -0.98
SQSTM1-206ENST00000466342 SLC38A11Q08AI6 406 aa8.91□□□□□ -0.98
SQSTM1-206ENST00000466342 BTNL8Q6UX41 500 aa8.91□□□□□ -0.98
SQSTM1-206ENST00000466342 TMEM144Q7Z5S9 345 aa8.91□□□□□ -0.98
SQSTM1-206ENST00000466342 STX12Q86Y82 276 aa8.91□□□□□ -0.98
SQSTM1-206ENST00000466342 GGACTQ9BVM4 153 aa8.91□□□□□ -0.98
SQSTM1-206ENST00000466342 SMPXQ9UHP9 88 aa8.91□□□□□ -0.98
SQSTM1-206ENST00000466342 ABCA13Q86UQ4 5058 aa8.91□□□□□ -0.98
SQSTM1-206ENST00000466342 SMCO3A2RU48 225 aa8.9□□□□□ -0.98
SQSTM1-206ENST00000466342 ZNF785A8K8V0 405 aa8.9□□□□□ -0.98
SQSTM1-206ENST00000466342 IL4P05112 153 aa8.9□□□□□ -0.98
SQSTM1-206ENST00000466342 BMI1P35226 326 aa8.9□□□□□ -0.98
SQSTM1-206ENST00000466342 ZNF90Q03938 601 aa8.9□□□□□ -0.98
SQSTM1-206ENST00000466342 TMEM217Q8N7C4 229 aa8.9□□□□□ -0.98
SQSTM1-206ENST00000466342 OR51G1Q8NGK1 321 aa8.9□□□□□ -0.98
SQSTM1-206ENST00000466342 ASB13Q8WXK3 278 aa8.9□□□□□ -0.98
SQSTM1-206ENST00000466342 METTL26Q96S19 204 aa8.9□□□□□ -0.98
SQSTM1-206ENST00000466342 RNF126Q9BV68 326 aa8.9□□□□□ -0.98
SQSTM1-206ENST00000466342 TUBA4BQ9H853 241 aa8.9□□□□□ -0.98
SQSTM1-206ENST00000466342 NPVFQ9HCQ7 196 aa8.9□□□□□ -0.98
SQSTM1-206ENST00000466342 IGHV3-49A0A0A0MS15 119 aa8.89□□□□□ -0.99
SQSTM1-206ENST00000466342 TRAV25A0A0B4J276 109 aa8.89□□□□□ -0.99
SQSTM1-206ENST00000466342 CHEK1O14757 476 aa8.89□□□□□ -0.99
SQSTM1-206ENST00000466342 GIPP09681 153 aaPredicted RBP8.89□□□□□ -0.99
SQSTM1-206ENST00000466342 NPPCP23582 126 aa8.89□□□□□ -0.99
SQSTM1-206ENST00000466342 CRYBB3P26998 211 aa8.89□□□□□ -0.99
SQSTM1-206ENST00000466342 HBG1P69891 147 aa8.89□□□□□ -0.99
SQSTM1-206ENST00000466342 HBG2P69892 147 aa8.89□□□□□ -0.99
SQSTM1-206ENST00000466342 EWSR1Q01844 656 aaKnown RBP eCLIP8.89□□□□□ -0.99
SQSTM1-206ENST00000466342 USF2Q15853 346 aaPredicted RBP8.89□□□□□ -0.99
SQSTM1-206ENST00000466342 TMEM61Q8N0U2 210 aa8.89□□□□□ -0.99
SQSTM1-206ENST00000466342 LILRB2Q8N423 598 aa8.89□□□□□ -0.99
SQSTM1-206ENST00000466342 RNF125Q96EQ8 232 aa8.89□□□□□ -0.99
SQSTM1-206ENST00000466342 RHPN1-AS1Q9BWJ2 59 aa8.89□□□□□ -0.99
SQSTM1-206ENST00000466342 SLC25A31Q9H0C2 315 aa8.89□□□□□ -0.99
SQSTM1-206ENST00000466342 VSIRQ9H7M9 311 aa8.89□□□□□ -0.99
SQSTM1-206ENST00000466342 MBD2Q9UBB5 411 aa8.89□□□□□ -0.99
SQSTM1-206ENST00000466342 SELENOKQ9Y6D0 94 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms