RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 PRR31Q5SQ13 230 aa15.69■□□□□ 0.1
CCDC88B-204ENST00000463837 TRAV5A0A0B4J249 113 aa15.69■□□□□ 0.1
CCDC88B-204ENST00000463837 C5orf63A6NC05 138 aa15.69■□□□□ 0.1
CCDC88B-204ENST00000463837 NPFFO15130 113 aa15.69■□□□□ 0.1
CCDC88B-204ENST00000463837 SEPSECSQ9HD40 501 aaKnown RBP15.69■□□□□ 0.1
CCDC88B-204ENST00000463837 SMAD7O15105 426 aaKnown RBP15.69■□□□□ 0.1
CCDC88B-204ENST00000463837 IGHV2-70P01814 119 aa15.68■□□□□ 0.1
CCDC88B-204ENST00000463837 IGHV2-5P01817 119 aa15.68■□□□□ 0.1
CCDC88B-204ENST00000463837 TRGV3P03979 118 aa15.68■□□□□ 0.1
CCDC88B-204ENST00000463837 CD33P20138 364 aa15.68■□□□□ 0.1
CCDC88B-204ENST00000463837 DUX5Q96PT3 197 aa15.68■□□□□ 0.1
CCDC88B-204ENST00000463837 SIGMAR1Q99720 223 aa15.68■□□□□ 0.1
CCDC88B-204ENST00000463837 IGKV3OR2-268A0A0C4DH90 116 aa15.68■□□□□ 0.1
CCDC88B-204ENST00000463837 SUMO2P61956 95 aaKnown RBP15.68■□□□□ 0.1
CCDC88B-204ENST00000463837 RALGAPA1Q6GYQ0 2036 aa15.68■□□□□ 0.1
CCDC88B-204ENST00000463837 BSPH1Q075Z2 132 aa15.68■□□□□ 0.1
CCDC88B-204ENST00000463837 A0A0G2JLM5 398 aa15.68■□□□□ 0.1
CCDC88B-204ENST00000463837 DNAL4O96015 105 aa15.68■□□□□ 0.1
CCDC88B-204ENST00000463837 UBE2V1Q13404 147 aa15.68■□□□□ 0.1
CCDC88B-204ENST00000463837 AKAP6Q13023 2319 aa15.68■□□□□ 0.1
CCDC88B-204ENST00000463837 TSC2P49815 1807 aa15.67■□□□□ 0.1
CCDC88B-204ENST00000463837 MED12Q93074 2177 aa15.67■□□□□ 0.1
CCDC88B-204ENST00000463837 PSMB11A5LHX3 300 aa15.67■□□□□ 0.1
CCDC88B-204ENST00000463837 PFN1P07737 140 aaKnown RBP15.67■□□□□ 0.1
CCDC88B-204ENST00000463837 IGHV1-18A0A0C4DH31 117 aa15.67■□□□□ 0.1
CCDC88B-204ENST00000463837 PINLYPA6NC86 204 aa15.67■□□□□ 0.1
CCDC88B-204ENST00000463837 TRGV9Q99603 122 aa15.67■□□□□ 0.1
CCDC88B-204ENST00000463837 NTN3O00634 580 aaPredicted RBP15.67■□□□□ 0.1
CCDC88B-204ENST00000463837 PSPNO60542 156 aa15.67■□□□□ 0.1
CCDC88B-204ENST00000463837 C15orf62A8K5M9 175 aa15.66■□□□□ 0.1
CCDC88B-204ENST00000463837 TMEM262E9PQX1 116 aa15.66■□□□□ 0.1
CCDC88B-204ENST00000463837 IGHV3OR16-10A0A075B7F0 116 aa15.66■□□□□ 0.1
CCDC88B-204ENST00000463837 H3BRM9 83 aa15.66■□□□□ 0.1
CCDC88B-204ENST00000463837 ZNF585BQ52M93 769 aa15.66■□□□□ 0.1
CCDC88B-204ENST00000463837 BMPERQ8N8U9 685 aa15.66■□□□□ 0.1
CCDC88B-204ENST00000463837 INTS1Q8N201 2190 aaKnown RBP15.66■□□□□ 0.1
CCDC88B-204ENST00000463837 NDUFS8O00217 210 aa15.66■□□□□ 0.1
CCDC88B-204ENST00000463837 LCN12Q6JVE5 192 aa15.66■□□□□ 0.1
CCDC88B-204ENST00000463837 MOB4Q9Y3A3 225 aa15.66■□□□□ 0.1
CCDC88B-204ENST00000463837 SAMD5Q5TGI4 173 aa15.66■□□□□ 0.1
CCDC88B-204ENST00000463837 NAA38Q9BRA0 125 aaKnown RBP15.66■□□□□ 0.1
CCDC88B-204ENST00000463837 FAM71F2Q6NXP2 309 aa15.65■□□□□ 0.1
CCDC88B-204ENST00000463837 SPTBN2O15020 2390 aa15.65■□□□□ 0.1
CCDC88B-204ENST00000463837 ETV2O00321 342 aaPredicted RBP15.65■□□□□ 0.1
CCDC88B-204ENST00000463837 HOXA3O43365 443 aaPredicted RBP15.65■□□□□ 0.1
CCDC88B-204ENST00000463837 VKORC1Q9BQB6 163 aa15.65■□□□□ 0.1
CCDC88B-204ENST00000463837 TNFRSF18Q9Y5U5 241 aa15.65■□□□□ 0.1
CCDC88B-204ENST00000463837 SELENOKQ9Y6D0 94 aa15.65■□□□□ 0.1
CCDC88B-204ENST00000463837 A0A0G2JRQ6 117 aa15.65■□□□□ 0.1
CCDC88B-204ENST00000463837 PRB4P10163 310 aaPredicted RBP15.65■□□□□ 0.1
CCDC88B-204ENST00000463837 PLAURQ03405 335 aa15.65■□□□□ 0.1
CCDC88B-204ENST00000463837 PRB3Q04118 309 aaPredicted RBP15.65■□□□□ 0.1
CCDC88B-204ENST00000463837 NTF4P34130 210 aa15.65■□□□□ 0.1
CCDC88B-204ENST00000463837 RPRMLQ8N4K4 120 aa15.65■□□□□ 0.1
CCDC88B-204ENST00000463837 NUP35Q8NFH5 326 aa15.65■□□□□ 0.1
CCDC88B-204ENST00000463837 OR13C6PQ8NH95 151 aa15.65■□□□□ 0.1
CCDC88B-204ENST00000463837 DMRTA2Q96SC8 542 aa15.65■□□□□ 0.1
CCDC88B-204ENST00000463837 LHFPL4Q7Z7J7 247 aa15.64■□□□□ 0.09
CCDC88B-204ENST00000463837 OR10W1Q8NGF6 305 aa15.64■□□□□ 0.09
CCDC88B-204ENST00000463837 TMEM167AQ8TBQ9 72 aa15.64■□□□□ 0.09
CCDC88B-204ENST00000463837 ZNF581Q9P0T4 197 aa15.64■□□□□ 0.09
CCDC88B-204ENST00000463837 TCRAP04437 139 aa15.64■□□□□ 0.09
CCDC88B-204ENST00000463837 ZNF479Q96JC4 524 aa15.64■□□□□ 0.09
CCDC88B-204ENST00000463837 C1orf147Q96MC9 270 aaPredicted RBP15.64■□□□□ 0.09
CCDC88B-204ENST00000463837 RSPO3Q9BXY4 272 aaPredicted RBP15.64■□□□□ 0.09
CCDC88B-204ENST00000463837 MYLKQ15746 1914 aa15.64■□□□□ 0.09
CCDC88B-204ENST00000463837 TRAV8-2A0A0B4J237 113 aa15.64■□□□□ 0.09
CCDC88B-204ENST00000463837 ABCA7Q8IZY2 2146 aa15.64■□□□□ 0.09
CCDC88B-204ENST00000463837 SPRR3Q9UBC9 169 aa15.64■□□□□ 0.09
CCDC88B-204ENST00000463837 EREGO14944 169 aa15.63■□□□□ 0.09
CCDC88B-204ENST00000463837 FOXG1P55316 489 aaPredicted RBP15.63■□□□□ 0.09
CCDC88B-204ENST00000463837 PPIFP30405 207 aaKnown RBP15.63■□□□□ 0.09
CCDC88B-204ENST00000463837 Q6ZRM9 215 aa15.63■□□□□ 0.09
CCDC88B-204ENST00000463837 C7orf69Q9H7B7 122 aa15.63■□□□□ 0.09
CCDC88B-204ENST00000463837 TRPM7Q96QT4 1865 aa15.63■□□□□ 0.09
CCDC88B-204ENST00000463837 SYS1-DBNDD2H3BUS1 97 aa15.63■□□□□ 0.09
CCDC88B-204ENST00000463837 JMJD8Q96S16 334 aa15.63■□□□□ 0.09
CCDC88B-204ENST00000463837 CYSLTR1Q9Y271 337 aa15.63■□□□□ 0.09
CCDC88B-204ENST00000463837 CLEC19AQ6UXS0 136 aa15.62■□□□□ 0.09
CCDC88B-204ENST00000463837 DMRTC2Q8IXT2 367 aaPredicted RBP15.62■□□□□ 0.09
CCDC88B-204ENST00000463837 RNF5Q99942 180 aa15.62■□□□□ 0.09
CCDC88B-204ENST00000463837 POLR3KQ9Y2Y1 108 aaPredicted RBP15.62■□□□□ 0.09
CCDC88B-204ENST00000463837 CHTOPQ9Y3Y2 248 aaKnown RBP15.62■□□□□ 0.09
CCDC88B-204ENST00000463837 TRAV21A0A0B4J279 112 aa15.62■□□□□ 0.09
CCDC88B-204ENST00000463837 GFRA4Q9GZZ7 299 aa15.62■□□□□ 0.09
CCDC88B-204ENST00000463837 EVI2AP22794 236 aa15.62■□□□□ 0.09
CCDC88B-204ENST00000463837 VWA8A3KMH1 1905 aa15.62■□□□□ 0.09
CCDC88B-204ENST00000463837 LINC00473A8K010 186 aa15.61■□□□□ 0.09
CCDC88B-204ENST00000463837 E9PLN8 166 aa15.61■□□□□ 0.09
CCDC88B-204ENST00000463837 RNASE4P34096 147 aaKnown RBP15.61■□□□□ 0.09
CCDC88B-204ENST00000463837 SLC25A39Q9BZJ4 359 aaPredicted RBP15.61■□□□□ 0.09
CCDC88B-204ENST00000463837 hDV102S1A0JD36 115 aa15.61■□□□□ 0.09
CCDC88B-204ENST00000463837 ITGB1BP1O14713 200 aa15.61■□□□□ 0.09
CCDC88B-204ENST00000463837 CD177Q8N6Q3 437 aa15.61■□□□□ 0.09
CCDC88B-204ENST00000463837 IGHV1-46P01743 117 aa15.61■□□□□ 0.09
CCDC88B-204ENST00000463837 MPV17L2Q567V2 206 aa15.61■□□□□ 0.09
CCDC88B-204ENST00000463837 LYPD1Q8N2G4 141 aa15.61■□□□□ 0.09
CCDC88B-204ENST00000463837 CD5LO43866 347 aa15.61■□□□□ 0.09
CCDC88B-204ENST00000463837 B3GALT5-AS1P59052 145 aa15.61■□□□□ 0.09
CCDC88B-204ENST00000463837 GAGE13Q4V321 117 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms