RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 SLC25A21Q9BQT8 299 aaPredicted RBP10.21□□□□□ -0.77
USP4-206ENST00000461553 KNCNA6PVL3 124 aa10.2□□□□□ -0.78
USP4-206ENST00000461553 FABP1P07148 127 aa10.2□□□□□ -0.78
USP4-206ENST00000461553 PSG1P11464 419 aa10.2□□□□□ -0.78
USP4-206ENST00000461553 SNRPD3P62318 126 aaKnown RBP10.2□□□□□ -0.78
USP4-206ENST00000461553 PSMG4Q5JS54 123 aa10.2□□□□□ -0.78
USP4-206ENST00000461553 ACTL10Q5JWF8 245 aa10.2□□□□□ -0.78
USP4-206ENST00000461553 SPANXN2Q5MJ10 180 aa10.2□□□□□ -0.78
USP4-206ENST00000461553 SIGLEC15Q6ZMC9 328 aa10.2□□□□□ -0.78
USP4-206ENST00000461553 OR51G1Q8NGK1 321 aa10.2□□□□□ -0.78
USP4-206ENST00000461553 C11orf45Q8TAV5 145 aa10.2□□□□□ -0.78
USP4-206ENST00000461553 PHLDA1Q8WV24 401 aaPredicted RBP10.2□□□□□ -0.78
USP4-206ENST00000461553 PBDC1Q9BVG4 233 aa10.2□□□□□ -0.78
USP4-206ENST00000461553 DNAH6Q9C0G6 4158 aa10.2□□□□□ -0.78
USP4-206ENST00000461553 NRN1Q9NPD7 142 aa10.2□□□□□ -0.78
USP4-206ENST00000461553 PFDN2Q9UHV9 154 aa10.2□□□□□ -0.78
USP4-206ENST00000461553 FAM90A26D6RGX4 464 aa10.19□□□□□ -0.78
USP4-206ENST00000461553 MED6O75586 246 aa10.19□□□□□ -0.78
USP4-206ENST00000461553 IAPPP10997 89 aa10.19□□□□□ -0.78
USP4-206ENST00000461553 SLC25A6P12236 298 aa10.19□□□□□ -0.78
USP4-206ENST00000461553 INPP1P49441 399 aa10.19□□□□□ -0.78
USP4-206ENST00000461553 RAB11AP62491 216 aa10.19□□□□□ -0.78
USP4-206ENST00000461553 OR8G2PQ6IF36 304 aa10.19□□□□□ -0.78
USP4-206ENST00000461553 CCDC190Q86UF4 302 aa10.19□□□□□ -0.78
USP4-206ENST00000461553 CENPSQ8N2Z9 138 aa10.19□□□□□ -0.78
USP4-206ENST00000461553 LRTM2Q8N967 370 aa10.19□□□□□ -0.78
USP4-206ENST00000461553 FBXL17Q9UF56 701 aa10.19□□□□□ -0.78
USP4-206ENST00000461553 PAIP2BQ9ULR5 123 aaKnown RBP10.19□□□□□ -0.78
USP4-206ENST00000461553 TMED3Q9Y3Q3 217 aa10.19□□□□□ -0.78
USP4-206ENST00000461553 BUB3O43684 328 aa10.18□□□□□ -0.78
USP4-206ENST00000461553 PITX3O75364 302 aa10.18□□□□□ -0.78
USP4-206ENST00000461553 SFT2D2O95562 160 aa10.18□□□□□ -0.78
USP4-206ENST00000461553 C4BPBP20851 252 aa10.18□□□□□ -0.78
USP4-206ENST00000461553 GPX4P36969 197 aaPredicted RBP10.18□□□□□ -0.78
USP4-206ENST00000461553 NANOS2P60321 138 aaKnown RBP10.18□□□□□ -0.78
USP4-206ENST00000461553 PPP1R1AQ13522 171 aa10.18□□□□□ -0.78
USP4-206ENST00000461553 CIB3Q96Q77 187 aaPredicted RBP10.18□□□□□ -0.78
USP4-206ENST00000461553 RBM38Q9H0Z9 239 aaKnown RBP10.18□□□□□ -0.78
USP4-206ENST00000461553 VPS13DQ5THJ4 4388 aa10.17□□□□□ -0.78
USP4-206ENST00000461553 ZNF701M0R085 212 aaPredicted RBP10.17□□□□□ -0.78
USP4-206ENST00000461553 DEFB4AO15263 64 aa10.17□□□□□ -0.78
USP4-206ENST00000461553 UBE2MP61081 183 aaKnown RBP10.17□□□□□ -0.78
USP4-206ENST00000461553 LYZP61626 148 aa10.17□□□□□ -0.78
USP4-206ENST00000461553 RPP30P78346 268 aaKnown RBP10.17□□□□□ -0.78
USP4-206ENST00000461553 GAMTQ14353 236 aa10.17□□□□□ -0.78
USP4-206ENST00000461553 TRIQKQ629K1 86 aa10.17□□□□□ -0.78
USP4-206ENST00000461553 SRRQ9GZT4 340 aa10.17□□□□□ -0.78
USP4-206ENST00000461553 SEPSECSQ9HD40 501 aaKnown RBP10.17□□□□□ -0.78
USP4-206ENST00000461553 FRAS1Q86XX4 4008 aa10.17□□□□□ -0.78
USP4-206ENST00000461553 IGKV1D-37A0A075B6S9 117 aa10.16□□□□□ -0.78
USP4-206ENST00000461553 HOXB5P09067 269 aa10.16□□□□□ -0.78
USP4-206ENST00000461553 MIFP14174 115 aa10.16□□□□□ -0.78
USP4-206ENST00000461553 ZNF90Q03938 601 aa10.16□□□□□ -0.78
USP4-206ENST00000461553 Q8NAQ8 132 aa10.16□□□□□ -0.78
USP4-206ENST00000461553 PPP1R14BQ96C90 147 aa10.16□□□□□ -0.78
USP4-206ENST00000461553 RAB40CQ96S21 281 aa10.16□□□□□ -0.78
USP4-206ENST00000461553 IGHV4-28A0A0C4DH34 117 aa10.15□□□□□ -0.78
USP4-206ENST00000461553 NAP1L6A6NFF2 107 aa10.15□□□□□ -0.78
USP4-206ENST00000461553 SYNGR2O43760 224 aa10.15□□□□□ -0.78
USP4-206ENST00000461553 GIG44P09565 113 aaPredicted RBP10.15□□□□□ -0.78
USP4-206ENST00000461553 NUTF2P61970 127 aaKnown RBP10.15□□□□□ -0.78
USP4-206ENST00000461553 TRGV9Q99603 122 aa10.15□□□□□ -0.78
USP4-206ENST00000461553 C1QTNF4Q9BXJ3 329 aa10.15□□□□□ -0.78
USP4-206ENST00000461553 CLEC5AQ9NY25 188 aa10.15□□□□□ -0.78
USP4-206ENST00000461553 ZNF705EA8MWA4 302 aaPredicted RBP10.14□□□□□ -0.79
USP4-206ENST00000461553 SNRPGP15A8MWD9 76 aa10.14□□□□□ -0.79
USP4-206ENST00000461553 WRBO00258 174 aa10.14□□□□□ -0.79
USP4-206ENST00000461553 OR2F1Q13607 317 aa10.14□□□□□ -0.79
USP4-206ENST00000461553 GGNBP1Q5YKI7 109 aa10.14□□□□□ -0.79
USP4-206ENST00000461553 THAP8Q8NA92 274 aa10.14□□□□□ -0.79
USP4-206ENST00000461553 COQ8AQ8NI60 647 aa10.14□□□□□ -0.79
USP4-206ENST00000461553 MAGT1Q9H0U3 335 aa10.14□□□□□ -0.79
USP4-206ENST00000461553 HRH4Q9H3N8 390 aa10.14□□□□□ -0.79
USP4-206ENST00000461553 TBC1D24Q9ULP9 559 aa10.14□□□□□ -0.79
USP4-206ENST00000461553 DNAH10Q8IVF4 4471 aa10.14□□□□□ -0.79
USP4-206ENST00000461553 C11orf94C9JXX5 98 aa10.13□□□□□ -0.79
USP4-206ENST00000461553 H3BP45 60 aa10.13□□□□□ -0.79
USP4-206ENST00000461553 CFDP00746 253 aaPredicted RBP10.13□□□□□ -0.79
USP4-206ENST00000461553 HLA-DRB4P13762 266 aa10.13□□□□□ -0.79
USP4-206ENST00000461553 ID1P41134 155 aa10.13□□□□□ -0.79
USP4-206ENST00000461553 NKX2-1P43699 371 aaPredicted RBP10.13□□□□□ -0.79
USP4-206ENST00000461553 PSMB3P49720 205 aa10.13□□□□□ -0.79
USP4-206ENST00000461553 AKR1C1Q04828 323 aa10.13□□□□□ -0.79
USP4-206ENST00000461553 SPANXN5Q5MJ07 72 aa10.13□□□□□ -0.79
USP4-206ENST00000461553 C1orf194Q5T5A4 169 aa10.13□□□□□ -0.79
USP4-206ENST00000461553 C2CD4CQ8TF44 421 aa10.13□□□□□ -0.79
USP4-206ENST00000461553 HLA-DRB4X5D2U9 266 aa10.13□□□□□ -0.79
USP4-206ENST00000461553 C9orf170A2RU37 121 aa10.12□□□□□ -0.79
USP4-206ENST00000461553 CENPXA8MT69 81 aa10.12□□□□□ -0.79
USP4-206ENST00000461553 H3BMM0 161 aa10.12□□□□□ -0.79
USP4-206ENST00000461553 NDUFB6O95139 128 aa10.12□□□□□ -0.79
USP4-206ENST00000461553 SAMD13Q5VXD3 122 aa10.12□□□□□ -0.79
USP4-206ENST00000461553 LGALS9CQ6DKI2 356 aa10.12□□□□□ -0.79
USP4-206ENST00000461553 OR8I2Q8N0Y5 310 aa10.12□□□□□ -0.79
USP4-206ENST00000461553 LINC00052Q96N35 136 aa10.12□□□□□ -0.79
USP4-206ENST00000461553 STRAPQ9Y3F4 350 aaKnown RBP10.12□□□□□ -0.79
USP4-206ENST00000461553 X6R8D5 127 aa10.12□□□□□ -0.79
USP4-206ENST00000461553 IGKV1OR2-108A0A075B7D4 117 aa10.11□□□□□ -0.79
USP4-206ENST00000461553 PRSS46E5RG02 174 aa10.11□□□□□ -0.79
USP4-206ENST00000461553 IFNA21P01568 189 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms