RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 PFDN2Q9UHV9 154 aa16.99■□□□□ 0.31
PTPN4-208ENST00000460289 ID3Q02535 119 aa16.98■□□□□ 0.31
PTPN4-208ENST00000460289 ZNF124Q15973 351 aa16.98■□□□□ 0.31
PTPN4-208ENST00000460289 C16orf54Q6UWD8 224 aa16.98■□□□□ 0.31
PTPN4-208ENST00000460289 CCDC32Q9BV29 185 aa16.98■□□□□ 0.31
PTPN4-208ENST00000460289 CSTL1Q9H114 145 aa16.98■□□□□ 0.31
PTPN4-208ENST00000460289 DEFB131AP59861 70 aa16.97■□□□□ 0.31
PTPN4-208ENST00000460289 DEFB135Q30KP9 77 aa16.97■□□□□ 0.31
PTPN4-208ENST00000460289 RNF125Q96EQ8 232 aa16.97■□□□□ 0.31
PTPN4-208ENST00000460289 K7EQG2 157 aa16.96■□□□□ 0.31
PTPN4-208ENST00000460289 NUP62P37198 522 aaPredicted RBP16.96■□□□□ 0.31
PTPN4-208ENST00000460289 NKX2-1P43699 371 aaPredicted RBP16.96■□□□□ 0.31
PTPN4-208ENST00000460289 SPANXN5Q5MJ07 72 aa16.96■□□□□ 0.31
PTPN4-208ENST00000460289 GLMPQ8WWB7 406 aa16.96■□□□□ 0.31
PTPN4-208ENST00000460289 RNF183Q96D59 192 aa16.96■□□□□ 0.31
PTPN4-208ENST00000460289 C20orf85Q9H1P6 137 aa16.96■□□□□ 0.31
PTPN4-208ENST00000460289 STRAPQ9Y3F4 350 aaKnown RBP16.96■□□□□ 0.31
PTPN4-208ENST00000460289 IGKV1D-37A0A075B6S9 117 aa16.95■□□□□ 0.3
PTPN4-208ENST00000460289 MPTX1A8MV57 137 aa16.95■□□□□ 0.3
PTPN4-208ENST00000460289 SNRPGP15A8MWD9 76 aa16.95■□□□□ 0.3
PTPN4-208ENST00000460289 BUB3O43684 328 aa16.95■□□□□ 0.3
PTPN4-208ENST00000460289 ZNF90Q03938 601 aa16.95■□□□□ 0.3
PTPN4-208ENST00000460289 FAM24BQ8N5W8 94 aa16.95■□□□□ 0.3
PTPN4-208ENST00000460289 DCANP1Q8TF63 244 aa16.95■□□□□ 0.3
PTPN4-208ENST00000460289 MITD1Q8WV92 249 aa16.95■□□□□ 0.3
PTPN4-208ENST00000460289 S100ZQ8WXG8 99 aa16.95■□□□□ 0.3
PTPN4-208ENST00000460289 TRGV9Q99603 122 aa16.95■□□□□ 0.3
PTPN4-208ENST00000460289 TCRBP04435 133 aa16.94■□□□□ 0.3
PTPN4-208ENST00000460289 POLR2GP62487 172 aaKnown RBP eCLIP16.94■□□□□ 0.3
PTPN4-208ENST00000460289 LEMD1Q68G75 181 aa16.94■□□□□ 0.3
PTPN4-208ENST00000460289 OR8G2PQ6IF36 304 aa16.94■□□□□ 0.3
PTPN4-208ENST00000460289 OR4D5Q8NGN0 318 aa16.94■□□□□ 0.3
PTPN4-208ENST00000460289 PBDC1Q9BVG4 233 aa16.94■□□□□ 0.3
PTPN4-208ENST00000460289 THAP8Q8NA92 274 aa16.93■□□□□ 0.3
PTPN4-208ENST00000460289 PSENENQ9NZ42 101 aa16.93■□□□□ 0.3
PTPN4-208ENST00000460289 PRSS46E5RG02 174 aa16.92■□□□□ 0.3
PTPN4-208ENST00000460289 CFDP00746 253 aaPredicted RBP16.92■□□□□ 0.3
PTPN4-208ENST00000460289 IAH1Q2TAA2 248 aaPredicted RBP16.92■□□□□ 0.3
PTPN4-208ENST00000460289 SIGLEC15Q6ZMC9 328 aa16.92■□□□□ 0.3
PTPN4-208ENST00000460289 STHQ8IWL8 128 aa16.92■□□□□ 0.3
PTPN4-208ENST00000460289 SMIM8Q96KF7 97 aa16.92■□□□□ 0.3
PTPN4-208ENST00000460289 H3BP45 60 aa16.91■□□□□ 0.3
PTPN4-208ENST00000460289 ZNF688P0C7X2 276 aa16.91■□□□□ 0.3
PTPN4-208ENST00000460289 GATAD1Q8WUU5 269 aa16.91■□□□□ 0.3
PTPN4-208ENST00000460289 SEPSECSQ9HD40 501 aaKnown RBP16.91■□□□□ 0.3
PTPN4-208ENST00000460289 NRN1Q9NPD7 142 aa16.91■□□□□ 0.3
PTPN4-208ENST00000460289 TRAV6A0A075B6T7 132 aa16.9■□□□□ 0.3
PTPN4-208ENST00000460289 IGKV1OR2-108A0A075B7D4 117 aa16.9■□□□□ 0.3
PTPN4-208ENST00000460289 A6NHS1 94 aa16.9■□□□□ 0.3
PTPN4-208ENST00000460289 SSSCA1O60232 199 aa16.9■□□□□ 0.3
PTPN4-208ENST00000460289 LYZP61626 148 aa16.9■□□□□ 0.3
PTPN4-208ENST00000460289 OR2F1Q13607 317 aa16.9■□□□□ 0.3
PTPN4-208ENST00000460289 GSKIPQ9P0R6 139 aa16.9■□□□□ 0.3
PTPN4-208ENST00000460289 SNRPD3P62318 126 aaKnown RBP16.89■□□□□ 0.29
PTPN4-208ENST00000460289 C1orf194Q5T5A4 169 aa16.89■□□□□ 0.29
PTPN4-208ENST00000460289 MZT2BQ6NZ67 158 aa16.89■□□□□ 0.29
PTPN4-208ENST00000460289 ZBTB8BQ8NAP8 495 aaPredicted RBP16.89■□□□□ 0.29
PTPN4-208ENST00000460289 RAB40CQ96S21 281 aa16.89■□□□□ 0.29
PTPN4-208ENST00000460289 NUDT15Q9NV35 164 aa16.89■□□□□ 0.29
PTPN4-208ENST00000460289 FBXL17Q9UF56 701 aa16.89■□□□□ 0.29
PTPN4-208ENST00000460289 A0A0J9YWU9 116 aa16.88■□□□□ 0.29
PTPN4-208ENST00000460289 FAM240BA0A1B0GVZ2 78 aa16.88■□□□□ 0.29
PTPN4-208ENST00000460289 SCGB1D2O95969 90 aa16.88■□□□□ 0.29
PTPN4-208ENST00000460289 CA1P00915 261 aaPredicted RBP16.88■□□□□ 0.29
PTPN4-208ENST00000460289 AKR1C1Q04828 323 aa16.88■□□□□ 0.29
PTPN4-208ENST00000460289 PPP1R14BQ96C90 147 aa16.88■□□□□ 0.29
PTPN4-208ENST00000460289 TAS2R30P59541 319 aa16.87■□□□□ 0.29
PTPN4-208ENST00000460289 ZNF846Q147U1 533 aa16.87■□□□□ 0.29
PTPN4-208ENST00000460289 ACOT7LQ6ZUV0 252 aa16.87■□□□□ 0.29
PTPN4-208ENST00000460289 TMEM217Q8N7C4 229 aa16.87■□□□□ 0.29
PTPN4-208ENST00000460289 ZNF431Q8TF32 576 aaPredicted RBP16.87■□□□□ 0.29
PTPN4-208ENST00000460289 RARRES2Q99969 163 aa16.87■□□□□ 0.29
PTPN4-208ENST00000460289 RYR3Q15413 4870 aa16.86■□□□□ 0.29
PTPN4-208ENST00000460289 CSMD3Q7Z407 3707 aa16.86■□□□□ 0.29
PTPN4-208ENST00000460289 H2AFB2P0C5Z0 115 aa16.86■□□□□ 0.29
PTPN4-208ENST00000460289 ATF4P18848 351 aaPredicted RBP16.86■□□□□ 0.29
PTPN4-208ENST00000460289 S100A7P31151 101 aa16.86■□□□□ 0.29
PTPN4-208ENST00000460289 PAX9P55771 341 aa16.86■□□□□ 0.29
PTPN4-208ENST00000460289 TMEM41BQ5BJD5 291 aa16.86■□□□□ 0.29
PTPN4-208ENST00000460289 PSMG4Q5JS54 123 aa16.86■□□□□ 0.29
PTPN4-208ENST00000460289 TMEM144Q7Z5S9 345 aa16.86■□□□□ 0.29
PTPN4-208ENST00000460289 TRPT1Q86TN4 253 aaKnown RBP16.86■□□□□ 0.29
PTPN4-208ENST00000460289 BPIFCQ8NFQ6 507 aa16.86■□□□□ 0.29
PTPN4-208ENST00000460289 SLC45A2Q9UMX9 530 aa16.86■□□□□ 0.29
PTPN4-208ENST00000460289 TSC22D2O75157 780 aa16.85■□□□□ 0.29
PTPN4-208ENST00000460289 SPP1P10451 314 aa16.85■□□□□ 0.29
PTPN4-208ENST00000460289 ACTL10Q5JWF8 245 aa16.85■□□□□ 0.29
PTPN4-208ENST00000460289 MORN3Q6PF18 240 aaPredicted RBP16.85■□□□□ 0.29
PTPN4-208ENST00000460289 TMEM14EPQ6UXP3 125 aa16.85■□□□□ 0.29
PTPN4-208ENST00000460289 WDR12Q9GZL7 423 aaKnown RBP16.85■□□□□ 0.29
PTPN4-208ENST00000460289 SMCO3A2RU48 225 aa16.84■□□□□ 0.29
PTPN4-208ENST00000460289 KNCNA6PVL3 124 aa16.84■□□□□ 0.29
PTPN4-208ENST00000460289 PMS2P5A8MQ11 134 aa16.84■□□□□ 0.29
PTPN4-208ENST00000460289 ASAH1Q13510 395 aa16.84■□□□□ 0.29
PTPN4-208ENST00000460289 OR8I2Q8N0Y5 310 aa16.84■□□□□ 0.29
PTPN4-208ENST00000460289 C12orf45Q8N5I9 185 aaPredicted RBP16.84■□□□□ 0.29
PTPN4-208ENST00000460289 OR10P1Q8NGE3 313 aa16.84■□□□□ 0.29
PTPN4-208ENST00000460289 SEC22CQ9BRL7 303 aa16.84■□□□□ 0.29
PTPN4-208ENST00000460289 PTTG2Q9NZH5 202 aa16.84■□□□□ 0.29
PTPN4-208ENST00000460289 TBC1D24Q9ULP9 559 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms