RNA–Protein interactions for RNA: ENST00000458707.1

VPS50-208, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 1,898 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-208ENST00000458707 CA1P00915 261 aaPredicted RBP6.89□□□□□ -1.31
VPS50-208ENST00000458707 NTF3P20783 257 aa6.89□□□□□ -1.31
VPS50-208ENST00000458707 CEACAM3P40198 252 aa6.89□□□□□ -1.31
VPS50-208ENST00000458707 CKS1BP61024 79 aa6.89□□□□□ -1.31
VPS50-208ENST00000458707 MSMPQ1L6U9 139 aa6.89□□□□□ -1.31
VPS50-208ENST00000458707 ATP5L2Q7Z4Y8 100 aa6.89□□□□□ -1.31
VPS50-208ENST00000458707 WFDC8Q8IUA0 241 aa6.89□□□□□ -1.31
VPS50-208ENST00000458707 CNEP1R1Q8N9A8 125 aa6.89□□□□□ -1.31
VPS50-208ENST00000458707 NUP35Q8NFH5 326 aa6.89□□□□□ -1.31
VPS50-208ENST00000458707 OR4F17Q8NGA8 305 aa6.89□□□□□ -1.31
VPS50-208ENST00000458707 KRTAP4-8Q9BYQ9 185 aa6.89□□□□□ -1.31
VPS50-208ENST00000458707 TNFRSF19Q9NS68 423 aa6.89□□□□□ -1.31
VPS50-208ENST00000458707 C1RLQ9NZP8 487 aa6.89□□□□□ -1.31
VPS50-208ENST00000458707 AMMECR1Q9Y4X0 333 aaPredicted RBP6.89□□□□□ -1.31
VPS50-208ENST00000458707 GVINP1Q7Z2Y8 2422 aa6.89□□□□□ -1.31
VPS50-208ENST00000458707 IGHV1-69-2A0A0G2JMI3 117 aa6.88□□□□□ -1.31
VPS50-208ENST00000458707 A0A1B0GXF2 115 aa6.88□□□□□ -1.31
VPS50-208ENST00000458707 SRRM4A7MD48 611 aaKnown RBP6.88□□□□□ -1.31
VPS50-208ENST00000458707 CRXO43186 299 aaPredicted RBP6.88□□□□□ -1.31
VPS50-208ENST00000458707 HSBP1O75506 76 aa6.88□□□□□ -1.31
VPS50-208ENST00000458707 SMIM17P0DL12 118 aa6.88□□□□□ -1.31
VPS50-208ENST00000458707 CT45A6P0DMU7 189 aa6.88□□□□□ -1.31
VPS50-208ENST00000458707 CT45A5P0DMU8 189 aa6.88□□□□□ -1.31
VPS50-208ENST00000458707 CT45A7P0DMV0 189 aa6.88□□□□□ -1.31
VPS50-208ENST00000458707 GATA4P43694 442 aa6.88□□□□□ -1.31
VPS50-208ENST00000458707 UBE2L3P68036 154 aaKnown RBP6.88□□□□□ -1.31
VPS50-208ENST00000458707 SPRNQ5BIV9 151 aa6.88□□□□□ -1.31
VPS50-208ENST00000458707 MORN5Q5VZ52 161 aa6.88□□□□□ -1.31
VPS50-208ENST00000458707 EBLN2Q6P2I7 272 aa6.88□□□□□ -1.31
VPS50-208ENST00000458707 SLC25A48Q6ZT89 311 aaKnown RBP6.88□□□□□ -1.31
VPS50-208ENST00000458707 ZNF329Q86UD4 541 aa6.88□□□□□ -1.31
VPS50-208ENST00000458707 C9orf106Q8NAJ2 232 aa6.88□□□□□ -1.31
VPS50-208ENST00000458707 SNRNP40Q96DI7 357 aaKnown RBP6.88□□□□□ -1.31
VPS50-208ENST00000458707 NAV3Q8IVL0 2385 aa6.88□□□□□ -1.31
VPS50-208ENST00000458707 URB1O60287 2271 aaKnown RBP6.88□□□□□ -1.31
VPS50-208ENST00000458707 TRAV5A0A0B4J249 113 aa6.87□□□□□ -1.31
VPS50-208ENST00000458707 TRBV7-9A0A0J9YWB2 115 aa6.87□□□□□ -1.31
VPS50-208ENST00000458707 IGLC7A0M8Q6 106 aa6.87□□□□□ -1.31
VPS50-208ENST00000458707 M0R2Z0 102 aa6.87□□□□□ -1.31
VPS50-208ENST00000458707 PEX7O00628 323 aa6.87□□□□□ -1.31
VPS50-208ENST00000458707 FSTL3O95633 263 aa6.87□□□□□ -1.31
VPS50-208ENST00000458707 IGKV1-16P04430 117 aa6.87□□□□□ -1.31
VPS50-208ENST00000458707 PSG1P11464 419 aa6.87□□□□□ -1.31
VPS50-208ENST00000458707 MYCNOSP40205 109 aa6.87□□□□□ -1.31
VPS50-208ENST00000458707 MFAP2P55001 183 aa6.87□□□□□ -1.31
VPS50-208ENST00000458707 UBE2G1P62253 170 aa6.87□□□□□ -1.31
VPS50-208ENST00000458707 HERV-K104P63124 156 aa6.87□□□□□ -1.31
VPS50-208ENST00000458707 MLANAQ16655 118 aa6.87□□□□□ -1.31
VPS50-208ENST00000458707 LRRC10Q5BKY1 277 aa6.87□□□□□ -1.31
VPS50-208ENST00000458707 LCN12Q6JVE5 192 aa6.87□□□□□ -1.31
VPS50-208ENST00000458707 MOGAT3Q86VF5 341 aa6.87□□□□□ -1.31
VPS50-208ENST00000458707 C1orf210Q8IVY1 113 aa6.87□□□□□ -1.31
VPS50-208ENST00000458707 MUC15Q8N387 334 aa6.87□□□□□ -1.31
VPS50-208ENST00000458707 NHLRC2Q8NBF2 726 aa6.87□□□□□ -1.31
VPS50-208ENST00000458707 LINC00479Q96M42 142 aa6.87□□□□□ -1.31
VPS50-208ENST00000458707 SSBP3Q9BWW4 388 aaPredicted RBP6.87□□□□□ -1.31
VPS50-208ENST00000458707 ZNF71Q9NQZ8 489 aaPredicted RBP6.87□□□□□ -1.31
VPS50-208ENST00000458707 NDUFA4L2Q9NRX3 87 aa6.87□□□□□ -1.31
VPS50-208ENST00000458707 ZNF355PQ9NSJ1 428 aa6.87□□□□□ -1.31
VPS50-208ENST00000458707 SLC25A15Q9Y619 301 aa6.87□□□□□ -1.31
VPS50-208ENST00000458707 CADP27708 2225 aa6.87□□□□□ -1.31
VPS50-208ENST00000458707 GAGE12BA1L429 117 aa6.87□□□□□ -1.31
VPS50-208ENST00000458707 TM4SF5O14894 197 aa6.87□□□□□ -1.31
VPS50-208ENST00000458707 SAA1P0DJI8 122 aaPredicted RBP6.87□□□□□ -1.31
VPS50-208ENST00000458707 HIST1H1EP10412 219 aaKnown RBP6.87□□□□□ -1.31
VPS50-208ENST00000458707 IGLL1P15814 213 aa6.87□□□□□ -1.31
VPS50-208ENST00000458707 FAM162BQ5T6X4 162 aa6.87□□□□□ -1.31
VPS50-208ENST00000458707 UNQ5815/PRO19632Q6UWF5 114 aa6.87□□□□□ -1.31
VPS50-208ENST00000458707 ATOH7Q8N100 152 aa6.87□□□□□ -1.31
VPS50-208ENST00000458707 OR1L4Q8NGR5 311 aa6.87□□□□□ -1.31
VPS50-208ENST00000458707 OSR1Q8TAX0 266 aaPredicted RBP6.87□□□□□ -1.31
VPS50-208ENST00000458707 SIGMAR1Q99720 223 aa6.87□□□□□ -1.31
VPS50-208ENST00000458707 ASH1LQ9NR48 2969 aaKnown RBP6.87□□□□□ -1.31
VPS50-208ENST00000458707 NBEAQ8NFP9 2946 aa6.86□□□□□ -1.31
VPS50-208ENST00000458707 TRAV34A0A0B4J273 112 aa6.86□□□□□ -1.31
VPS50-208ENST00000458707 HIGD1CA8MV81 97 aa6.86□□□□□ -1.31
VPS50-208ENST00000458707 VWC2LB2RUY7 222 aa6.86□□□□□ -1.31
VPS50-208ENST00000458707 GNG7O60262 68 aa6.86□□□□□ -1.31
VPS50-208ENST00000458707 HINT1P49773 126 aaPredicted RBP6.86□□□□□ -1.31
VPS50-208ENST00000458707 VAMP3Q15836 100 aa6.86□□□□□ -1.31
VPS50-208ENST00000458707 FAM120AOSQ5T036 256 aa6.86□□□□□ -1.31
VPS50-208ENST00000458707 PATE2Q6UY27 113 aa6.86□□□□□ -1.31
VPS50-208ENST00000458707 ZNF833PQ6ZTB9 187 aa6.86□□□□□ -1.31
VPS50-208ENST00000458707 THAP8Q8NA92 274 aa6.86□□□□□ -1.31
VPS50-208ENST00000458707 FER1L6-AS1Q8NA97 138 aa6.86□□□□□ -1.31
VPS50-208ENST00000458707 ITLN1Q8WWA0 313 aa6.86□□□□□ -1.31
VPS50-208ENST00000458707 FXYD5Q96DB9 178 aa6.86□□□□□ -1.31
VPS50-208ENST00000458707 URB1-AS1Q96HZ7 61 aa6.86□□□□□ -1.31
VPS50-208ENST00000458707 PAXXQ9BUH6 204 aa6.86□□□□□ -1.31
VPS50-208ENST00000458707 RPUSD1Q9UJJ7 312 aaKnown RBP6.86□□□□□ -1.31
VPS50-208ENST00000458707 KLF12Q9Y4X4 402 aa6.86□□□□□ -1.31
VPS50-208ENST00000458707 ARFGEF3Q5TH69 2177 aa6.86□□□□□ -1.31
VPS50-208ENST00000458707 USP24Q9UPU5 2620 aa6.86□□□□□ -1.31
VPS50-208ENST00000458707 MAP1BP46821 2468 aaKnown RBP6.86□□□□□ -1.31
VPS50-208ENST00000458707 IGLV3-9A0A075B6K5 115 aa6.85□□□□□ -1.31
VPS50-208ENST00000458707 IGKV1D-37A0A075B6S9 117 aa6.85□□□□□ -1.31
VPS50-208ENST00000458707 TCRBV4S1A1TA0A5B7 111 aa6.85□□□□□ -1.31
VPS50-208ENST00000458707 PYYP10082 97 aa6.85□□□□□ -1.31
VPS50-208ENST00000458707 GLRXP35754 106 aa6.85□□□□□ -1.31
VPS50-208ENST00000458707 REG1BP48304 166 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms