RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 RD3LP0DJH9 198 aa11.15□□□□□ -0.62
USP39-207ENST00000450066 ORM2P19652 201 aa11.15□□□□□ -0.62
USP39-207ENST00000450066 CD81P60033 236 aa11.15□□□□□ -0.62
USP39-207ENST00000450066 RHOGP84095 191 aa11.15□□□□□ -0.62
USP39-207ENST00000450066 ZNF355PQ9NSJ1 428 aa11.15□□□□□ -0.62
USP39-207ENST00000450066 SCO1O75880 301 aa11.15□□□□□ -0.63
USP39-207ENST00000450066 SNAPINO95295 136 aa11.15□□□□□ -0.63
USP39-207ENST00000450066 YPEL3P61236 119 aaPredicted RBP11.15□□□□□ -0.63
USP39-207ENST00000450066 C15orf32Q32M92 178 aa11.15□□□□□ -0.63
USP39-207ENST00000450066 OR1B1Q8NGR6 318 aa11.15□□□□□ -0.63
USP39-207ENST00000450066 S4R3C0 116 aa11.15□□□□□ -0.63
USP39-207ENST00000450066 TOMM40O96008 361 aa11.14□□□□□ -0.63
USP39-207ENST00000450066 Q56UQ5 140 aa11.14□□□□□ -0.63
USP39-207ENST00000450066 ATRAIDQ6UW56 229 aa11.14□□□□□ -0.63
USP39-207ENST00000450066 LINC00305Q7Z4B0 112 aa11.14□□□□□ -0.63
USP39-207ENST00000450066 FAM167A-AS1Q96KT0 104 aa11.14□□□□□ -0.63
USP39-207ENST00000450066 UHRF2Q96PU4 802 aa11.14□□□□□ -0.63
USP39-207ENST00000450066 TXNDC17Q9BRA2 123 aa11.14□□□□□ -0.63
USP39-207ENST00000450066 TMEM167BQ9NRX6 74 aa11.14□□□□□ -0.63
USP39-207ENST00000450066 VPREB3Q9UKI3 123 aa11.14□□□□□ -0.63
USP39-207ENST00000450066 TLN2Q9Y4G6 2542 aa11.14□□□□□ -0.63
USP39-207ENST00000450066 C11orf94C9JXX5 98 aa11.13□□□□□ -0.63
USP39-207ENST00000450066 TMEM250H0YL14 139 aa11.13□□□□□ -0.63
USP39-207ENST00000450066 OR7C2O60412 319 aa11.13□□□□□ -0.63
USP39-207ENST00000450066 SCGB2A1O75556 95 aa11.13□□□□□ -0.63
USP39-207ENST00000450066 CEBPGP53567 150 aa11.13□□□□□ -0.63
USP39-207ENST00000450066 MORN5Q5VZ52 161 aa11.13□□□□□ -0.63
USP39-207ENST00000450066 OR51G1Q8NGK1 321 aa11.13□□□□□ -0.63
USP39-207ENST00000450066 ZNF503Q96F45 646 aa11.13□□□□□ -0.63
USP39-207ENST00000450066 SLC25A2Q9BXI2 301 aa11.13□□□□□ -0.63
USP39-207ENST00000450066 NKX6-2Q9C056 277 aaPredicted RBP11.13□□□□□ -0.63
USP39-207ENST00000450066 ZNF580Q9UK33 172 aa11.13□□□□□ -0.63
USP39-207ENST00000450066 AP4M1O00189 453 aa11.13□□□□□ -0.63
USP39-207ENST00000450066 BRI3O95415 125 aa11.13□□□□□ -0.63
USP39-207ENST00000450066 UBE2G2P60604 165 aa11.13□□□□□ -0.63
USP39-207ENST00000450066 OR4F5Q8NH21 305 aa11.13□□□□□ -0.63
USP39-207ENST00000450066 ZNF502Q8TBZ5 544 aa11.13□□□□□ -0.63
USP39-207ENST00000450066 SUN5Q8TC36 379 aa11.13□□□□□ -0.63
USP39-207ENST00000450066 OR4F4Q96R69 305 aa11.13□□□□□ -0.63
USP39-207ENST00000450066 LINC00527Q9UJ94 153 aa11.13□□□□□ -0.63
USP39-207ENST00000450066 ARL2-SNX15V9GYD0 113 aa11.13□□□□□ -0.63
USP39-207ENST00000450066 TRAV5A0A0B4J249 113 aa11.12□□□□□ -0.63
USP39-207ENST00000450066 PPIFP30405 207 aaKnown RBP11.12□□□□□ -0.63
USP39-207ENST00000450066 CST9LP1Q5W188 147 aa11.12□□□□□ -0.63
USP39-207ENST00000450066 FAM90A2PQ658T7 463 aa11.12□□□□□ -0.63
USP39-207ENST00000450066 Q6ZS46 218 aa11.12□□□□□ -0.63
USP39-207ENST00000450066 OR5AU1Q8NGC0 362 aa11.12□□□□□ -0.63
USP39-207ENST00000450066 HIGD1AQ9Y241 93 aa11.12□□□□□ -0.63
USP39-207ENST00000450066 OR2T8A6NH00 312 aa11.12□□□□□ -0.63
USP39-207ENST00000450066 FAM223BA6NKX1 122 aa11.12□□□□□ -0.63
USP39-207ENST00000450066 H3BUA1 57 aa11.12□□□□□ -0.63
USP39-207ENST00000450066 CD5LO43866 347 aa11.12□□□□□ -0.63
USP39-207ENST00000450066 PDE6DO43924 150 aa11.12□□□□□ -0.63
USP39-207ENST00000450066 IGHV3-23P01764 117 aa11.12□□□□□ -0.63
USP39-207ENST00000450066 CTSGP08311 255 aa11.12□□□□□ -0.63
USP39-207ENST00000450066 LYZP61626 148 aa11.12□□□□□ -0.63
USP39-207ENST00000450066 KRTAP1-1Q07627 177 aa11.12□□□□□ -0.63
USP39-207ENST00000450066 FAM223AQ8IWN6 122 aa11.12□□□□□ -0.63
USP39-207ENST00000450066 ZNF491Q8N8L2 437 aa11.12□□□□□ -0.63
USP39-207ENST00000450066 CLRN3Q8NCR9 226 aa11.12□□□□□ -0.63
USP39-207ENST00000450066 STXBP6Q8NFX7 210 aa11.12□□□□□ -0.63
USP39-207ENST00000450066 MS4A10Q96PG2 267 aa11.12□□□□□ -0.63
USP39-207ENST00000450066 GAR1Q9NY12 217 aaKnown RBP11.12□□□□□ -0.63
USP39-207ENST00000450066 MRPL27Q9P0M9 148 aaKnown RBP11.12□□□□□ -0.63
USP39-207ENST00000450066 TRBV7-1A0A0A6YYK4 115 aa11.11□□□□□ -0.63
USP39-207ENST00000450066 WI2-2373I1.2A0A1W2PRP0 233 aa11.11□□□□□ -0.63
USP39-207ENST00000450066 FAM74A7A6NL05 159 aa11.11□□□□□ -0.63
USP39-207ENST00000450066 OR2C1O95371 312 aa11.11□□□□□ -0.63
USP39-207ENST00000450066 Q8WTZ3 238 aa11.11□□□□□ -0.63
USP39-207ENST00000450066 EEF1AKMT3Q96AZ1 226 aa11.11□□□□□ -0.63
USP39-207ENST00000450066 NOL4LQ96MY1 436 aaPredicted RBP11.11□□□□□ -0.63
USP39-207ENST00000450066 YTHDF2Q9Y5A9 579 aaKnown RBP11.11□□□□□ -0.63
USP39-207ENST00000450066 HOXA3O43365 443 aaPredicted RBP11.1□□□□□ -0.63
USP39-207ENST00000450066 ATP5G3P48201 142 aa11.1□□□□□ -0.63
USP39-207ENST00000450066 ATP5G2Q06055 141 aa11.1□□□□□ -0.63
USP39-207ENST00000450066 RNF125Q96EQ8 232 aa11.1□□□□□ -0.63
USP39-207ENST00000450066 ATP6V0BQ99437 205 aa11.1□□□□□ -0.63
USP39-207ENST00000450066 NIPSNAP3BQ9BS92 247 aa11.1□□□□□ -0.63
USP39-207ENST00000450066 H3BQ15 152 aa11.1□□□□□ -0.63
USP39-207ENST00000450066 NUPL2O15504 423 aaKnown RBP11.1□□□□□ -0.63
USP39-207ENST00000450066 IL4P05112 153 aa11.1□□□□□ -0.63
USP39-207ENST00000450066 OR10J4P0C629 311 aa11.1□□□□□ -0.63
USP39-207ENST00000450066 UBE2L3P68036 154 aaKnown RBP11.1□□□□□ -0.63
USP39-207ENST00000450066 PAXXQ9BUH6 204 aa11.1□□□□□ -0.63
USP39-207ENST00000450066 SLC25A39Q9BZJ4 359 aaPredicted RBP11.1□□□□□ -0.63
USP39-207ENST00000450066 OR51M1Q9H341 326 aa11.1□□□□□ -0.63
USP39-207ENST00000450066 PUS1Q9Y606 427 aaKnown RBP eCLIP11.1□□□□□ -0.63
USP39-207ENST00000450066 F6UZH7 168 aa11.09□□□□□ -0.63
USP39-207ENST00000450066 TRGV3P03979 118 aa11.09□□□□□ -0.63
USP39-207ENST00000450066 CLEC3BP05452 202 aa11.09□□□□□ -0.63
USP39-207ENST00000450066 ADMP35318 185 aa11.09□□□□□ -0.63
USP39-207ENST00000450066 BTN1A1Q13410 526 aa11.09□□□□□ -0.63
USP39-207ENST00000450066 FAM74A3Q4VXF1 159 aa11.09□□□□□ -0.63
USP39-207ENST00000450066 IL17RELQ6ZVW7 336 aa11.09□□□□□ -0.63
USP39-207ENST00000450066 CCDC140Q96MF4 163 aa11.09□□□□□ -0.63
USP39-207ENST00000450066 CHRDL1Q9BU40 450 aa11.09□□□□□ -0.63
USP39-207ENST00000450066 IGLV1-40P01703 118 aa11.08□□□□□ -0.63
USP39-207ENST00000450066 PYYP10082 97 aa11.08□□□□□ -0.63
USP39-207ENST00000450066 GPR183P32249 361 aa11.08□□□□□ -0.63
USP39-207ENST00000450066 CFHR3Q02985 330 aa11.08□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms