RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 TMEM217Q8N7C4 229 aa11.44□□□□□ -0.58
LIMS1-210ENST00000449684 C7orf50Q9BRJ6 194 aaKnown RBP11.44□□□□□ -0.58
LIMS1-210ENST00000449684 TENM2Q9NT68 2774 aa11.43□□□□□ -0.58
LIMS1-210ENST00000449684 LCE6AA0A183 80 aa11.43□□□□□ -0.58
LIMS1-210ENST00000449684 CXorf65A6NEN9 183 aa11.43□□□□□ -0.58
LIMS1-210ENST00000449684 K7EQG2 157 aa11.43□□□□□ -0.58
LIMS1-210ENST00000449684 JTBO76095 146 aa11.43□□□□□ -0.58
LIMS1-210ENST00000449684 CA1P00915 261 aaPredicted RBP11.43□□□□□ -0.58
LIMS1-210ENST00000449684 NUP62P37198 522 aaPredicted RBP11.43□□□□□ -0.58
LIMS1-210ENST00000449684 PMS2P11Q13670 270 aa11.43□□□□□ -0.58
LIMS1-210ENST00000449684 C16orf54Q6UWD8 224 aa11.43□□□□□ -0.58
LIMS1-210ENST00000449684 FAM24BQ8N5W8 94 aa11.43□□□□□ -0.58
LIMS1-210ENST00000449684 GATAD1Q8WUU5 269 aa11.43□□□□□ -0.58
LIMS1-210ENST00000449684 RNF125Q96EQ8 232 aa11.43□□□□□ -0.58
LIMS1-210ENST00000449684 RARRES2Q99969 163 aa11.43□□□□□ -0.58
LIMS1-210ENST00000449684 FLVCR2Q9UPI3 526 aa11.43□□□□□ -0.58
LIMS1-210ENST00000449684 U3KQE9 123 aa11.43□□□□□ -0.58
LIMS1-210ENST00000449684 CSMD3Q7Z407 3707 aa11.43□□□□□ -0.58
LIMS1-210ENST00000449684 SNRPGP15A8MWD9 76 aa11.42□□□□□ -0.58
LIMS1-210ENST00000449684 ADAP1O75689 374 aa11.42□□□□□ -0.58
LIMS1-210ENST00000449684 OR4E1P0C645 316 aa11.42□□□□□ -0.58
LIMS1-210ENST00000449684 IL7P13232 177 aa11.42□□□□□ -0.58
LIMS1-210ENST00000449684 SPANXN5Q5MJ07 72 aa11.42□□□□□ -0.58
LIMS1-210ENST00000449684 SIGLEC15Q6ZMC9 328 aa11.42□□□□□ -0.58
LIMS1-210ENST00000449684 PPP1R14BQ96C90 147 aa11.42□□□□□ -0.58
LIMS1-210ENST00000449684 STARD9Q9P2P6 4700 aa11.42□□□□□ -0.58
LIMS1-210ENST00000449684 LYZP61626 148 aa11.41□□□□□ -0.58
LIMS1-210ENST00000449684 SNRPD3P62318 126 aaKnown RBP11.41□□□□□ -0.58
LIMS1-210ENST00000449684 ZNF90Q03938 601 aa11.41□□□□□ -0.58
LIMS1-210ENST00000449684 CNPY1Q3B7I2 92 aa11.41□□□□□ -0.58
LIMS1-210ENST00000449684 DCANP1Q8TF63 244 aa11.41□□□□□ -0.58
LIMS1-210ENST00000449684 GLMPQ8WWB7 406 aa11.41□□□□□ -0.58
LIMS1-210ENST00000449684 STRAPQ9Y3F4 350 aaKnown RBP11.41□□□□□ -0.58
LIMS1-210ENST00000449684 DYNC2H1Q8NCM8 4307 aaKnown RBP11.41□□□□□ -0.58
LIMS1-210ENST00000449684 H3BP45 60 aa11.4□□□□□ -0.58
LIMS1-210ENST00000449684 BUB3O43684 328 aa11.4□□□□□ -0.58
LIMS1-210ENST00000449684 ANXA7P20073 488 aaKnown RBP11.4□□□□□ -0.58
LIMS1-210ENST00000449684 NKX2-1P43699 371 aaPredicted RBP11.4□□□□□ -0.58
LIMS1-210ENST00000449684 OR2F1Q13607 317 aa11.4□□□□□ -0.58
LIMS1-210ENST00000449684 PSMG4Q5JS54 123 aa11.4□□□□□ -0.58
LIMS1-210ENST00000449684 OR8G2PQ6IF36 304 aa11.4□□□□□ -0.58
LIMS1-210ENST00000449684 OR11H2Q8NH07 326 aa11.4□□□□□ -0.58
LIMS1-210ENST00000449684 SDHCQ99643 169 aaPredicted RBP11.4□□□□□ -0.58
LIMS1-210ENST00000449684 NRN1Q9NPD7 142 aa11.4□□□□□ -0.58
LIMS1-210ENST00000449684 KNCNA6PVL3 124 aa11.39□□□□□ -0.59
LIMS1-210ENST00000449684 SCGB1D2O95969 90 aa11.39□□□□□ -0.59
LIMS1-210ENST00000449684 ACTL10Q5JWF8 245 aa11.39□□□□□ -0.59
LIMS1-210ENST00000449684 TRGV9Q99603 122 aa11.39□□□□□ -0.59
LIMS1-210ENST00000449684 PSENENQ9NZ42 101 aa11.39□□□□□ -0.59
LIMS1-210ENST00000449684 FBXL17Q9UF56 701 aa11.39□□□□□ -0.59
LIMS1-210ENST00000449684 IGKV1D-37A0A075B6S9 117 aa11.38□□□□□ -0.59
LIMS1-210ENST00000449684 SMCO3A2RU48 225 aa11.38□□□□□ -0.59
LIMS1-210ENST00000449684 SSSCA1O60232 199 aa11.38□□□□□ -0.59
LIMS1-210ENST00000449684 CFDP00746 253 aaPredicted RBP11.38□□□□□ -0.59
LIMS1-210ENST00000449684 SPP1P10451 314 aa11.38□□□□□ -0.59
LIMS1-210ENST00000449684 POLR2GP62487 172 aaKnown RBP eCLIP11.38□□□□□ -0.59
LIMS1-210ENST00000449684 AKR1C1Q04828 323 aa11.38□□□□□ -0.59
LIMS1-210ENST00000449684 TMEM41BQ5BJD5 291 aa11.38□□□□□ -0.59
LIMS1-210ENST00000449684 MORN3Q6PF18 240 aaPredicted RBP11.38□□□□□ -0.59
LIMS1-210ENST00000449684 NUPR2A6NF83 97 aa11.37□□□□□ -0.59
LIMS1-210ENST00000449684 LYRM1O43325 122 aa11.37□□□□□ -0.59
LIMS1-210ENST00000449684 S100A7P31151 101 aa11.37□□□□□ -0.59
LIMS1-210ENST00000449684 BTCP35070 178 aa11.37□□□□□ -0.59
LIMS1-210ENST00000449684 ID3Q02535 119 aa11.37□□□□□ -0.59
LIMS1-210ENST00000449684 IAH1Q2TAA2 248 aaPredicted RBP11.37□□□□□ -0.59
LIMS1-210ENST00000449684 TRPT1Q86TN4 253 aaKnown RBP11.37□□□□□ -0.59
LIMS1-210ENST00000449684 OR8I2Q8N0Y5 310 aa11.37□□□□□ -0.59
LIMS1-210ENST00000449684 THAP8Q8NA92 274 aa11.37□□□□□ -0.59
LIMS1-210ENST00000449684 BPIFCQ8NFQ6 507 aa11.37□□□□□ -0.59
LIMS1-210ENST00000449684 RAB40CQ96S21 281 aa11.37□□□□□ -0.59
LIMS1-210ENST00000449684 C20orf85Q9H1P6 137 aa11.37□□□□□ -0.59
LIMS1-210ENST00000449684 GSKIPQ9P0R6 139 aa11.37□□□□□ -0.59
LIMS1-210ENST00000449684 ATF4P18848 351 aaPredicted RBP11.36□□□□□ -0.59
LIMS1-210ENST00000449684 ID1P41134 155 aa11.36□□□□□ -0.59
LIMS1-210ENST00000449684 NUTF2P61970 127 aaKnown RBP11.36□□□□□ -0.59
LIMS1-210ENST00000449684 EWSR1Q01844 656 aaKnown RBP eCLIP11.36□□□□□ -0.59
LIMS1-210ENST00000449684 ZNF846Q147U1 533 aa11.36□□□□□ -0.59
LIMS1-210ENST00000449684 C1orf194Q5T5A4 169 aa11.36□□□□□ -0.59
LIMS1-210ENST00000449684 SEPSECSQ9HD40 501 aaKnown RBP11.36□□□□□ -0.59
LIMS1-210ENST00000449684 KLK5Q9Y337 293 aaPredicted RBP11.36□□□□□ -0.59
LIMS1-210ENST00000449684 LYSTQ99698 3801 aa11.36□□□□□ -0.59
LIMS1-210ENST00000449684 RYR2Q92736 4967 aa11.36□□□□□ -0.59
LIMS1-210ENST00000449684 ORM2P19652 201 aa11.35□□□□□ -0.59
LIMS1-210ENST00000449684 ACOT7LQ6ZUV0 252 aa11.35□□□□□ -0.59
LIMS1-210ENST00000449684 OR4D5Q8NGN0 318 aa11.35□□□□□ -0.59
LIMS1-210ENST00000449684 MITD1Q8WV92 249 aa11.35□□□□□ -0.59
LIMS1-210ENST00000449684 LINC00052Q96N35 136 aa11.35□□□□□ -0.59
LIMS1-210ENST00000449684 TRAV6A0A075B6T7 132 aa11.34□□□□□ -0.59
LIMS1-210ENST00000449684 IGKV1OR2-108A0A075B7D4 117 aa11.34□□□□□ -0.59
LIMS1-210ENST00000449684 FAM25EA8MYX2 175 aa11.34□□□□□ -0.59
LIMS1-210ENST00000449684 PLA2G10O15496 165 aa11.34□□□□□ -0.59
LIMS1-210ENST00000449684 TCRBP04435 133 aa11.34□□□□□ -0.59
LIMS1-210ENST00000449684 CEMP1Q6PRD7 247 aaPredicted RBP11.34□□□□□ -0.59
LIMS1-210ENST00000449684 ZBTB8BQ8NAP8 495 aaPredicted RBP11.34□□□□□ -0.59
LIMS1-210ENST00000449684 C11orf45Q8TAV5 145 aa11.34□□□□□ -0.59
LIMS1-210ENST00000449684 SMIM8Q96KF7 97 aa11.34□□□□□ -0.59
LIMS1-210ENST00000449684 CCDC32Q9BV29 185 aa11.34□□□□□ -0.59
LIMS1-210ENST00000449684 TMEM147Q9BVK8 224 aa11.34□□□□□ -0.59
LIMS1-210ENST00000449684 MFFQ9GZY8 342 aa11.34□□□□□ -0.59
LIMS1-210ENST00000449684 SLC25A22Q9H936 323 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms