RNA–Protein interactions for RNA: ENST00000446312.5

DDR1-238, Transcript of discoidin domain receptor tyrosine kinase 1, human

TSL 5 BASIC

Gene DDR1, Length 3,202 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDR1-238	ENST00000446312	CLEC7A	Q9BXN2	247 aa		10.21	□□□□□ -0.77
DDR1-238	ENST00000446312	PEF1	Q9UBV8	284 aa	Known RBP	10.21	□□□□□ -0.77
DDR1-238	ENST00000446312	PPIAL4G	P0DN37	164 aa		10.21	□□□□□ -0.78
DDR1-238	ENST00000446312	LOXL3	P58215	753 aa		10.21	□□□□□ -0.78
DDR1-238	ENST00000446312	FAM90A1	Q86YD7	464 aa		10.21	□□□□□ -0.78
DDR1-238	ENST00000446312	FER1L6-AS2	Q96M78	137 aa		10.21	□□□□□ -0.78
DDR1-238	ENST00000446312	TPSG1	Q9NRR2	321 aa		10.21	□□□□□ -0.78
DDR1-238	ENST00000446312	PNKD	Q8N490	385 aa		10.2	□□□□□ -0.78
DDR1-238	ENST00000446312	OR5B3	Q8NH48	314 aa		10.2	□□□□□ -0.78
DDR1-238	ENST00000446312	CCL17	Q92583	94 aa		10.2	□□□□□ -0.78
DDR1-238	ENST00000446312	HARBI1	Q96MB7	349 aa		10.2	□□□□□ -0.78
DDR1-238	ENST00000446312	OR8B2	Q96RD0	313 aa		10.2	□□□□□ -0.78
DDR1-238	ENST00000446312	MRPL20	Q9BYC9	149 aa	Known RBP	10.2	□□□□□ -0.78
DDR1-238	ENST00000446312	ZNF835	Q9Y2P0	537 aa		10.2	□□□□□ -0.78
DDR1-238	ENST00000446312	NCOR2	Q9Y618	2525 aa		10.2	□□□□□ -0.78
DDR1-238	ENST00000446312	hDV102S1	A0JD36	115 aa		10.2	□□□□□ -0.78
DDR1-238	ENST00000446312	SAA1	P0DJI8	122 aa	Predicted RBP	10.2	□□□□□ -0.78
DDR1-238	ENST00000446312	TMEM178A	Q8NBL3	297 aa		10.2	□□□□□ -0.78
DDR1-238	ENST00000446312	PGLYRP4	Q96LB8	373 aa		10.2	□□□□□ -0.78
DDR1-238	ENST00000446312	GEMIN7	Q9H840	131 aa	Known RBP	10.2	□□□□□ -0.78
DDR1-238	ENST00000446312	RBM14-RBM4	A0A0A0MSL8	147 aa	Known RBP	10.2	□□□□□ -0.78
DDR1-238	ENST00000446312	C15orf61	A6NNL5	157 aa		10.2	□□□□□ -0.78
DDR1-238	ENST00000446312	ADH4	P08319	380 aa		10.2	□□□□□ -0.78
DDR1-238	ENST00000446312	UQCRFS1	P47985	274 aa		10.2	□□□□□ -0.78
DDR1-238	ENST00000446312	HERV-K104	P63124	156 aa		10.2	□□□□□ -0.78
DDR1-238	ENST00000446312	GDF5OS	Q5U4N7	250 aa		10.2	□□□□□ -0.78
DDR1-238	ENST00000446312	TMEM136	Q6ZRR5	245 aa		10.2	□□□□□ -0.78
DDR1-238	ENST00000446312	COMMD5	Q9GZQ3	224 aa		10.2	□□□□□ -0.78
DDR1-238	ENST00000446312	TMSB15B	A0A087X1C1	80 aa		10.19	□□□□□ -0.78
DDR1-238	ENST00000446312	MGST3	O14880	152 aa		10.19	□□□□□ -0.78
DDR1-238	ENST00000446312	COX7A2P2	O60397	106 aa		10.19	□□□□□ -0.78
DDR1-238	ENST00000446312	ACP1	P24666	158 aa		10.19	□□□□□ -0.78
DDR1-238	ENST00000446312	VWC2	Q2TAL6	325 aa		10.19	□□□□□ -0.78
DDR1-238	ENST00000446312	INO80C	Q6PI98	192 aa	Predicted RBP	10.19	□□□□□ -0.78
DDR1-238	ENST00000446312	RBMXL3	Q8N7X1	1067 aa	Known RBP	10.19	□□□□□ -0.78
DDR1-238	ENST00000446312	TSKU	Q8WUA8	353 aa		10.19	□□□□□ -0.78
DDR1-238	ENST00000446312	RITA1	Q96K30	269 aa		10.19	□□□□□ -0.78
DDR1-238	ENST00000446312	HES4	Q9HCC6	221 aa		10.19	□□□□□ -0.78
DDR1-238	ENST00000446312	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	10.19	□□□□□ -0.78	2e-7	■■■□□ 16.6
DDR1-238	ENST00000446312	ANKHD1	Q8IWZ3	2542 aa	Known RBP	10.19	□□□□□ -0.78
DDR1-238	ENST00000446312	IGHV3OR16-8	A0A075B7F1	116 aa		10.19	□□□□□ -0.78
DDR1-238	ENST00000446312	YPEL3	P61236	119 aa	Predicted RBP	10.19	□□□□□ -0.78
DDR1-238	ENST00000446312	C17orf58	Q2M2W7	97 aa		10.19	□□□□□ -0.78
DDR1-238	ENST00000446312	TRGV10	A0A0A0MS01	117 aa		10.18	□□□□□ -0.78
DDR1-238	ENST00000446312	ZNF207	O43670	478 aa	Known RBP	10.18	□□□□□ -0.78
DDR1-238	ENST00000446312	SLC25A5	P05141	298 aa	Known RBP	10.18	□□□□□ -0.78
DDR1-238	ENST00000446312	ODF1	Q14990	250 aa		10.18	□□□□□ -0.78
DDR1-238	ENST00000446312	DEFB123	Q8N688	67 aa		10.18	□□□□□ -0.78
DDR1-238	ENST00000446312	ZNF479	Q96JC4	524 aa		10.18	□□□□□ -0.78
DDR1-238	ENST00000446312	SAP30L	Q9HAJ7	183 aa		10.18	□□□□□ -0.78
DDR1-238	ENST00000446312	PROCR	Q9UNN8	238 aa		10.18	□□□□□ -0.78
DDR1-238	ENST00000446312	PPIAL4C	A0A0B4J2A2	164 aa		10.18	□□□□□ -0.78
DDR1-238	ENST00000446312	TEX50	A0A1B0GTY4	177 aa		10.18	□□□□□ -0.78
DDR1-238	ENST00000446312		A0A1B0GW15	77 aa		10.18	□□□□□ -0.78
DDR1-238	ENST00000446312	PPIAL4D	F5H284	164 aa		10.18	□□□□□ -0.78
DDR1-238	ENST00000446312	BHLHA15	Q7RTS1	189 aa	Predicted RBP	10.18	□□□□□ -0.78
DDR1-238	ENST00000446312	SSX8	Q7RTT4	187 aa		10.18	□□□□□ -0.78
DDR1-238	ENST00000446312	SPATA12	Q7Z6I5	190 aa		10.18	□□□□□ -0.78
DDR1-238	ENST00000446312	MUC15	Q8N387	334 aa		10.18	□□□□□ -0.78
DDR1-238	ENST00000446312	CITED1	Q99966	193 aa		10.18	□□□□□ -0.78
DDR1-238	ENST00000446312	AMMECR1	Q9Y4X0	333 aa	Predicted RBP	10.18	□□□□□ -0.78
DDR1-238	ENST00000446312	HIGD1C	A8MV81	97 aa		10.18	□□□□□ -0.78
DDR1-238	ENST00000446312	PRSS46	E5RG02	174 aa		10.18	□□□□□ -0.78
DDR1-238	ENST00000446312	ZNF324	O75467	553 aa	Predicted RBP	10.18	□□□□□ -0.78
DDR1-238	ENST00000446312	TNFAIP6	P98066	277 aa	Predicted RBP	10.18	□□□□□ -0.78
DDR1-238	ENST00000446312	LSM4	Q9Y4Z0	139 aa	Known RBP	10.18	□□□□□ -0.78
DDR1-238	ENST00000446312	CHD8	Q9HCK8	2581 aa		10.18	□□□□□ -0.78
DDR1-238	ENST00000446312	CUL9	Q8IWT3	2517 aa		10.18	□□□□□ -0.78
DDR1-238	ENST00000446312	IGLC1	P0CG04	106 aa		10.17	□□□□□ -0.78
DDR1-238	ENST00000446312	IGLL1	P15814	213 aa		10.17	□□□□□ -0.78
DDR1-238	ENST00000446312	DEFB124	Q8NES8	71 aa		10.17	□□□□□ -0.78
DDR1-238	ENST00000446312	MRPL27	Q9P0M9	148 aa	Known RBP	10.17	□□□□□ -0.78
DDR1-238	ENST00000446312	SMPX	Q9UHP9	88 aa		10.17	□□□□□ -0.78
DDR1-238	ENST00000446312	PGP	A6NDG6	321 aa		10.17	□□□□□ -0.78
DDR1-238	ENST00000446312	CT45A6	P0DMU7	189 aa		10.17	□□□□□ -0.78
DDR1-238	ENST00000446312	CT45A5	P0DMU8	189 aa		10.17	□□□□□ -0.78
DDR1-238	ENST00000446312	CT45A7	P0DMV0	189 aa		10.17	□□□□□ -0.78
DDR1-238	ENST00000446312	CD59	P13987	128 aa		10.17	□□□□□ -0.78
DDR1-238	ENST00000446312	TRIP6	Q15654	476 aa	Known RBP	10.17	□□□□□ -0.78
DDR1-238	ENST00000446312	WFDC3	Q8IUB2	231 aa		10.17	□□□□□ -0.78
DDR1-238	ENST00000446312	PPP1R35	Q8TAP8	253 aa		10.17	□□□□□ -0.78
DDR1-238	ENST00000446312	C7orf71	A4D174	169 aa		10.16	□□□□□ -0.78
DDR1-238	ENST00000446312	LYNX1	G3V0Z9	82 aa		10.16	□□□□□ -0.78
DDR1-238	ENST00000446312	LYNX1	P0DP58	116 aa		10.16	□□□□□ -0.78
DDR1-238	ENST00000446312	EBLN2	Q6P2I7	272 aa		10.16	□□□□□ -0.78
DDR1-238	ENST00000446312	TMEM116	Q8NCL8	245 aa		10.16	□□□□□ -0.78
DDR1-238	ENST00000446312	OR4A5	Q8NH83	315 aa		10.16	□□□□□ -0.78
DDR1-238	ENST00000446312	MUC6	Q6W4X9	2439 aa		10.16	□□□□□ -0.78
DDR1-238	ENST00000446312	PPIAL4E	A0A075B759	164 aa		10.16	□□□□□ -0.78
DDR1-238	ENST00000446312	FAM231B	A6NCW3	169 aa		10.16	□□□□□ -0.78
DDR1-238	ENST00000446312	SRRM5	B3KS81	715 aa		10.16	□□□□□ -0.78
DDR1-238	ENST00000446312	CDX4	O14627	284 aa	Predicted RBP	10.16	□□□□□ -0.78
DDR1-238	ENST00000446312	PPIAL4F	P0DN26	164 aa		10.16	□□□□□ -0.78
DDR1-238	ENST00000446312	UBE2G1	P62253	170 aa		10.16	□□□□□ -0.78
DDR1-238	ENST00000446312	C12orf54	Q6X4T0	127 aa		10.16	□□□□□ -0.78
DDR1-238	ENST00000446312	KCNS1	Q96KK3	526 aa		10.16	□□□□□ -0.78
DDR1-238	ENST00000446312	PAXX	Q9BUH6	204 aa		10.16	□□□□□ -0.78
DDR1-238	ENST00000446312	IGHV3-35	A0A0C4DH35	117 aa		10.16	□□□□□ -0.78
DDR1-238	ENST00000446312		J3KRW8	73 aa		10.16	□□□□□ -0.78
DDR1-238	ENST00000446312	IGKV3-15	P01624	115 aa		10.16	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms