RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 HIST1H4AP62805 103 aaKnown RBP1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 RPS25P62851 125 aaKnown RBP1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 UBE2BP63146 152 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 CCL20P78556 96 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 PSG9Q00887 426 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 EMX2Q04743 252 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 EIF5AL1Q6IS14 154 aaKnown RBP1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 KRTAP5-5Q701N2 237 aaPredicted RBP1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 BRK1Q8WUW1 75 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 ADAT1Q9BUB4 502 aaKnown RBP1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 BAIAP2Q9UQB8 552 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 OVOS2A0A0J9YW53 1432 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 TECPR2O15040 1411 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 OVOS2Q6IE36 1432 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 ARFGEF1Q9Y6D6 1849 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 KMT2EQ8IZD2 1858 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 IGKV3D-15A0A087WSY6 115 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 A0A1B0GW64 132 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 IGHV1-46P01743 117 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 MT-ND4LP03901 98 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 KRTAP5-9P26371 169 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 HLA-DMBP28068 263 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 EVX1P49640 407 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 RPS11P62280 158 aaKnown RBP eCLIP1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 MYL5Q02045 173 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 RPL18Q07020 188 aaKnown RBP1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 IL17AQ16552 155 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 LINC00305Q7Z4B0 112 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 PDZD9Q8IXQ8 264 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 TEX29Q8N6K0 151 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 SLC30A7Q8NEW0 376 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 CIRBP-AS1Q8TBR5 109 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 C1orf147Q96MC9 270 aaPredicted RBP1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 MIEN1Q9BRT3 115 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 LINC00470Q9BZP3 86 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 OR5AC2Q9NZP5 309 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 MED23Q9ULK4 1368 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 HELZ2Q9BYK8 2649 aaKnown RBP1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 NALCNQ8IZF0 1738 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 ZFYVE26Q68DK2 2539 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 ZNF860A6NHJ4 632 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 BBIP1A8MTZ0 92 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 MT-ND6P03923 174 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 IL4P05112 153 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 METTL15P1P0C7V9 234 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 ZNF823P16415 610 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 CRIP2P52943 208 aaPredicted RBP1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 TSPEAR-AS2P59090 65 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 RHOGP84095 191 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 OR8G1Q15617 311 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 MORN2Q502X0 79 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 TMEM69Q5SWH9 247 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 TMEM244Q5VVB8 128 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 DPPA3Q6W0C5 159 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 CTAGE3PQ8IX95 158 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 CYB561D1Q8N8Q1 229 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 ERG28Q9UKR5 140 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 KDM6AO15550 1401 aaPredicted RBP1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 MYH3P11055 1940 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 DOCK5Q9H7D0 1870 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 LAMB2P55268 1798 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 CCNB3Q8WWL7 1395 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 A0A1W2PPR1 153 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 FAM168BA1KXE4 195 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 LEPROTO15243 131 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 IGLV1-47P01700 117 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 SCTP09683 121 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 NPPCP23582 126 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 CRYBB3P26998 211 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 RBP2P50120 134 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 SLC38A11Q08AI6 406 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 MSMO1Q15800 293 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 MRPL51Q4U2R6 128 aaKnown RBP1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 FAM104BQ5XKR9 115 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 ZNF322Q6U7Q0 402 aaPredicted RBP1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 HIST3H2BBQ8N257 126 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 C12orf45Q8N5I9 185 aaPredicted RBP1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 MIR7-3HGQ8N6C7 128 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 OR4E2Q8NGC2 313 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 OR52R1Q8NGF1 315 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 DEDD2Q8WXF8 326 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 ZNF799Q96GE5 643 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 TEX37Q96LM6 180 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 TAF9BQ9HBM6 251 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 FAM60AQ9NP50 221 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 MRPL16Q9NX20 251 aaKnown RBP1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 ZNF586Q9NXT0 402 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 TNFSF18Q9UNG2 199 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 HEY1Q9Y5J3 304 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 SOX21Q9Y651 276 aaPredicted RBP1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 KIF13BQ9NQT8 1826 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 COL18A1P39060 1754 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 XRN1Q8IZH2 1706 aaKnown RBP1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 CEP295Q9C0D2 2601 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 CACNA1HO95180 2353 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 TRBV24-1A0A075B6N3 115 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 IGHV3-64DA0A0J9YX35 117 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 UBFD1O14562 309 aaKnown RBP1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 IGF2P01344 180 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 C10orf126Q8N4M7 172 aa1.61□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms