RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 DUSP13Q9UII6 198 aa6.95□□□□□ -1.3
HPS4-206ENST00000439453 FOXA2Q9Y261 457 aaPredicted RBP6.95□□□□□ -1.3
HPS4-206ENST00000439453 C8orf88P0DMB2 117 aa6.95□□□□□ -1.3
HPS4-206ENST00000439453 MYOD1P15172 320 aa6.95□□□□□ -1.3
HPS4-206ENST00000439453 RPL24P83731 157 aaKnown RBP6.95□□□□□ -1.3
HPS4-206ENST00000439453 RBPJQ06330 500 aa6.95□□□□□ -1.3
HPS4-206ENST00000439453 FAM162BQ5T6X4 162 aa6.95□□□□□ -1.3
HPS4-206ENST00000439453 FAM90A1Q86YD7 464 aa6.95□□□□□ -1.3
HPS4-206ENST00000439453 ZNF469Q96JG9 3925 aaPredicted RBP6.95□□□□□ -1.3
HPS4-206ENST00000439453 IGKV1OR2-108A0A075B7D4 117 aa6.95□□□□□ -1.3
HPS4-206ENST00000439453 GAGE12BA1L429 117 aa6.95□□□□□ -1.3
HPS4-206ENST00000439453 J3QR06 171 aa6.95□□□□□ -1.3
HPS4-206ENST00000439453 PRRG2O14669 202 aa6.95□□□□□ -1.3
HPS4-206ENST00000439453 CD5LO43866 347 aa6.95□□□□□ -1.3
HPS4-206ENST00000439453 MPV17P39210 176 aa6.95□□□□□ -1.3
HPS4-206ENST00000439453 REG1BP48304 166 aa6.95□□□□□ -1.3
HPS4-206ENST00000439453 PRR31Q5SQ13 230 aa6.95□□□□□ -1.3
HPS4-206ENST00000439453 OR4S2Q8NH73 311 aa6.95□□□□□ -1.3
HPS4-206ENST00000439453 C19orf24Q9BVV8 132 aa6.95□□□□□ -1.3
HPS4-206ENST00000439453 TMEM14BQ9NUH8 114 aa6.95□□□□□ -1.3
HPS4-206ENST00000439453 PDZD2O15018 2839 aa6.94□□□□□ -1.3
HPS4-206ENST00000439453 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.94□□□□□ -1.3
HPS4-206ENST00000439453 HIGD1CA8MV81 97 aa6.94□□□□□ -1.3
HPS4-206ENST00000439453 C19orf84I3L1E1 186 aa6.94□□□□□ -1.3
HPS4-206ENST00000439453 GRNP28799 593 aaKnown RBP6.94□□□□□ -1.3
HPS4-206ENST00000439453 FAM71F2Q6NXP2 309 aa6.94□□□□□ -1.3
HPS4-206ENST00000439453 WDR82Q6UXN9 313 aa6.94□□□□□ -1.3
HPS4-206ENST00000439453 SLC25A33Q9BSK2 321 aa6.94□□□□□ -1.3
HPS4-206ENST00000439453 JPT1Q9UK76 154 aa6.94□□□□□ -1.3
HPS4-206ENST00000439453 CENPEQ02224 2701 aa6.94□□□□□ -1.3
HPS4-206ENST00000439453 CORTO00230 105 aa6.94□□□□□ -1.3
HPS4-206ENST00000439453 ZNF134P52741 427 aa6.94□□□□□ -1.3
HPS4-206ENST00000439453 DDB2Q92466 427 aa6.94□□□□□ -1.3
HPS4-206ENST00000439453 TMEM191AQ9H0A3 160 aa6.94□□□□□ -1.3
HPS4-206ENST00000439453 IFI27L2Q9H2X8 130 aa6.94□□□□□ -1.3
HPS4-206ENST00000439453 SCRT2Q9NQ03 307 aa6.94□□□□□ -1.3
HPS4-206ENST00000439453 AMMECR1Q9Y4X0 333 aaPredicted RBP6.94□□□□□ -1.3
HPS4-206ENST00000439453 APCP25054 2843 aa6.94□□□□□ -1.3
HPS4-206ENST00000439453 TRAV8-6A0A0B4J262 113 aa6.94□□□□□ -1.3
HPS4-206ENST00000439453 IGHV1-24A0A0C4DH33 117 aa6.94□□□□□ -1.3
HPS4-206ENST00000439453 A0A1B0GXF2 115 aa6.94□□□□□ -1.3
HPS4-206ENST00000439453 LEPROTL1O95214 131 aa6.94□□□□□ -1.3
HPS4-206ENST00000439453 UBE2L3P68036 154 aaKnown RBP6.94□□□□□ -1.3
HPS4-206ENST00000439453 SMIM21Q3B7S5 101 aa6.94□□□□□ -1.3
HPS4-206ENST00000439453 ATP5L2Q7Z4Y8 100 aa6.94□□□□□ -1.3
HPS4-206ENST00000439453 CD177Q8N6Q3 437 aa6.94□□□□□ -1.3
HPS4-206ENST00000439453 SMIM12Q96EX1 92 aa6.94□□□□□ -1.3
HPS4-206ENST00000439453 CHRDL1Q9BU40 450 aa6.94□□□□□ -1.3
HPS4-206ENST00000439453 CXXC4Q9H2H0 198 aa6.94□□□□□ -1.3
HPS4-206ENST00000439453 NCOR1P1Q9H4R4 102 aa6.94□□□□□ -1.3
HPS4-206ENST00000439453 JKAMPQ9P055 326 aa6.94□□□□□ -1.3
HPS4-206ENST00000439453 TRAV5A0A0B4J249 113 aa6.93□□□□□ -1.3
HPS4-206ENST00000439453 VWC2LB2RUY7 222 aa6.93□□□□□ -1.3
HPS4-206ENST00000439453 AGFG2O95081 481 aa6.93□□□□□ -1.3
HPS4-206ENST00000439453 HIST2H2BCQ6DN03 193 aa6.93□□□□□ -1.3
HPS4-206ENST00000439453 VWA1Q6PCB0 445 aa6.93□□□□□ -1.3
HPS4-206ENST00000439453 C1orf229Q6ZS94 237 aaPredicted RBP6.93□□□□□ -1.3
HPS4-206ENST00000439453 FAM167A-AS1Q96KT0 104 aa6.93□□□□□ -1.3
HPS4-206ENST00000439453 SLC25A2Q9BXI2 301 aa6.93□□□□□ -1.3
HPS4-206ENST00000439453 IDI2-AS1Q9NZ38 188 aa6.93□□□□□ -1.3
HPS4-206ENST00000439453 OR51B2Q9Y5P1 312 aa6.93□□□□□ -1.3
HPS4-206ENST00000439453 HECTD1Q9ULT8 2610 aa6.93□□□□□ -1.3
HPS4-206ENST00000439453 CYSRT1A8MQ03 144 aa6.93□□□□□ -1.3
HPS4-206ENST00000439453 TMEM238C9JI98 176 aa6.93□□□□□ -1.3
HPS4-206ENST00000439453 HLA-DRB1P01911 266 aa6.93□□□□□ -1.3
HPS4-206ENST00000439453 Q5PR19 223 aa6.93□□□□□ -1.3
HPS4-206ENST00000439453 MORN5Q5VZ52 161 aa6.93□□□□□ -1.3
HPS4-206ENST00000439453 ZNF841Q6ZN19 808 aa6.93□□□□□ -1.3
HPS4-206ENST00000439453 SSX8Q7RTT4 187 aa6.93□□□□□ -1.3
HPS4-206ENST00000439453 KLF14Q8TD94 323 aaPredicted RBP6.93□□□□□ -1.3
HPS4-206ENST00000439453 CHCHD1Q96BP2 118 aaKnown RBP6.93□□□□□ -1.3
HPS4-206ENST00000439453 MEGF9Q9H1U4 602 aa6.93□□□□□ -1.3
HPS4-206ENST00000439453 PEF1Q9UBV8 284 aaKnown RBP6.93□□□□□ -1.3
HPS4-206ENST00000439453 A0A087X0K7 114 aa6.93□□□□□ -1.3
HPS4-206ENST00000439453 PEX7O00628 323 aa6.93□□□□□ -1.3
HPS4-206ENST00000439453 HIST1H1EP10412 219 aaKnown RBP6.93□□□□□ -1.3
HPS4-206ENST00000439453 FOXA3P55318 350 aaPredicted RBP6.93□□□□□ -1.3
HPS4-206ENST00000439453 HIST1H1AQ02539 215 aaPredicted RBP6.93□□□□□ -1.3
HPS4-206ENST00000439453 OR9G1Q8NH87 305 aa6.93□□□□□ -1.3
HPS4-206ENST00000439453 MRPL32Q9BYC8 188 aaKnown RBP6.93□□□□□ -1.3
HPS4-206ENST00000439453 LOXL3P58215 753 aa6.92□□□□□ -1.3
HPS4-206ENST00000439453 ZNF329Q86UD4 541 aa6.92□□□□□ -1.3
HPS4-206ENST00000439453 DAZAP1Q96EP5 407 aaKnown RBP6.92□□□□□ -1.3
HPS4-206ENST00000439453 RAI1Q7Z5J4 1906 aaPredicted RBP6.92□□□□□ -1.3
HPS4-206ENST00000439453 IGLC1P0CG04 106 aa6.92□□□□□ -1.3
HPS4-206ENST00000439453 CD24P25063 80 aa6.92□□□□□ -1.3
HPS4-206ENST00000439453 PRDX2P32119 198 aa6.92□□□□□ -1.3
HPS4-206ENST00000439453 HBBP68871 147 aa6.92□□□□□ -1.3
HPS4-206ENST00000439453 MLANAQ16655 118 aa6.92□□□□□ -1.3
HPS4-206ENST00000439453 TCF24Q7RTU0 167 aa6.92□□□□□ -1.3
HPS4-206ENST00000439453 MS4A6AQ9H2W1 248 aa6.92□□□□□ -1.3
HPS4-206ENST00000439453 FBLL1A6NHQ2 334 aaKnown RBP6.91□□□□□ -1.3
HPS4-206ENST00000439453 SAP30O75446 220 aa6.91□□□□□ -1.3
HPS4-206ENST00000439453 PYYP10082 97 aa6.91□□□□□ -1.3
HPS4-206ENST00000439453 GPR183P32249 361 aa6.91□□□□□ -1.3
HPS4-206ENST00000439453 RIPPLY3P57055 190 aa6.91□□□□□ -1.3
HPS4-206ENST00000439453 UTF1Q5T230 341 aa6.91□□□□□ -1.3
HPS4-206ENST00000439453 PET117Q6UWS5 81 aa6.91□□□□□ -1.3
HPS4-206ENST00000439453 MAP1LC3CQ9BXW4 147 aa6.91□□□□□ -1.3
HPS4-206ENST00000439453 C7orf69Q9H7B7 122 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms