RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 C10orf55Q5SWW7 151 aa9.09□□□□□ -0.95
USP4-205ENST00000431357 NHLRC2Q8NBF2 726 aa9.09□□□□□ -0.95
USP4-205ENST00000431357 NUP35Q8NFH5 326 aa9.09□□□□□ -0.95
USP4-205ENST00000431357 FAM168AQ92567 244 aa9.09□□□□□ -0.95
USP4-205ENST00000431357 BORCS7Q96B45 105 aa9.09□□□□□ -0.95
USP4-205ENST00000431357 RCHY1Q96PM5 261 aa9.09□□□□□ -0.95
USP4-205ENST00000431357 Q9UFV3 132 aa9.09□□□□□ -0.95
USP4-205ENST00000431357 KLF12Q9Y4X4 402 aa9.09□□□□□ -0.95
USP4-205ENST00000431357 CORTO00230 105 aa9.08□□□□□ -0.96
USP4-205ENST00000431357 SLC25A17O43808 307 aa9.08□□□□□ -0.96
USP4-205ENST00000431357 OR2J3O76001 311 aa9.08□□□□□ -0.96
USP4-205ENST00000431357 NDUFB8O95169 186 aa9.08□□□□□ -0.96
USP4-205ENST00000431357 LOXP28300 417 aaPredicted RBP9.08□□□□□ -0.96
USP4-205ENST00000431357 DIAPH2-AS1Q14236 149 aa9.08□□□□□ -0.96
USP4-205ENST00000431357 FBLN7Q53RD9 439 aa9.08□□□□□ -0.96
USP4-205ENST00000431357 FAM162BQ5T6X4 162 aa9.08□□□□□ -0.96
USP4-205ENST00000431357 NIT1Q86X76 327 aa9.08□□□□□ -0.96
USP4-205ENST00000431357 C18orf32Q8TCD1 76 aa9.08□□□□□ -0.96
USP4-205ENST00000431357 CCL17Q92583 94 aa9.08□□□□□ -0.96
USP4-205ENST00000431357 CLUHP3Q96NS8 147 aa9.08□□□□□ -0.96
USP4-205ENST00000431357 SSBP3Q9BWW4 388 aaPredicted RBP9.08□□□□□ -0.96
USP4-205ENST00000431357 TNCP24821 2201 aa9.08□□□□□ -0.96
USP4-205ENST00000431357 FRYQ5TBA9 3013 aa9.08□□□□□ -0.96
USP4-205ENST00000431357 CA1P00915 261 aaPredicted RBP9.08□□□□□ -0.96
USP4-205ENST00000431357 SLC25A5P05141 298 aaKnown RBP9.08□□□□□ -0.96
USP4-205ENST00000431357 THBDP07204 575 aa9.08□□□□□ -0.96
USP4-205ENST00000431357 CTRLP40313 264 aa9.08□□□□□ -0.96
USP4-205ENST00000431357 RHOGP84095 191 aa9.08□□□□□ -0.96
USP4-205ENST00000431357 SLAQ13239 276 aa9.08□□□□□ -0.96
USP4-205ENST00000431357 BATFQ16520 125 aa9.08□□□□□ -0.96
USP4-205ENST00000431357 LYPD2Q6UXB3 125 aa9.08□□□□□ -0.96
USP4-205ENST00000431357 SPACA3Q8IXA5 215 aa9.08□□□□□ -0.96
USP4-205ENST00000431357 TMEM190Q8WZ59 177 aa9.08□□□□□ -0.96
USP4-205ENST00000431357 GPR82Q96P67 336 aa9.08□□□□□ -0.96
USP4-205ENST00000431357 CST9LQ9H4G1 147 aa9.08□□□□□ -0.96
USP4-205ENST00000431357 C7orf69Q9H7B7 122 aa9.08□□□□□ -0.96
USP4-205ENST00000431357 RNF114Q9Y508 228 aa9.08□□□□□ -0.96
USP4-205ENST00000431357 TRAV34A0A0B4J273 112 aa9.07□□□□□ -0.96
USP4-205ENST00000431357 IGLC7A0M8Q6 106 aa9.07□□□□□ -0.96
USP4-205ENST00000431357 C3orf79P0CE67 100 aa9.07□□□□□ -0.96
USP4-205ENST00000431357 IGHV1-8P0DP01 117 aa9.07□□□□□ -0.96
USP4-205ENST00000431357 RPL27AP46776 148 aaKnown RBP9.07□□□□□ -0.96
USP4-205ENST00000431357 PLP1P60201 277 aa9.07□□□□□ -0.96
USP4-205ENST00000431357 PMCHL1Q16048 86 aa9.07□□□□□ -0.96
USP4-205ENST00000431357 PSG3Q16557 428 aa9.07□□□□□ -0.96
USP4-205ENST00000431357 SPATA45Q537H7 98 aa9.07□□□□□ -0.96
USP4-205ENST00000431357 CT83Q5H943 113 aa9.07□□□□□ -0.96
USP4-205ENST00000431357 KLHDC1Q8N7A1 406 aa9.07□□□□□ -0.96
USP4-205ENST00000431357 TMEM116Q8NCL8 245 aa9.07□□□□□ -0.96
USP4-205ENST00000431357 NGBQ9NPG2 151 aa9.07□□□□□ -0.96
USP4-205ENST00000431357 JKAMPQ9P055 326 aa9.07□□□□□ -0.96
USP4-205ENST00000431357 MRPL36Q9P0J6 103 aaKnown RBP9.07□□□□□ -0.96
USP4-205ENST00000431357 UQCR10Q9UDW1 63 aa9.07□□□□□ -0.96
USP4-205ENST00000431357 SMPXQ9UHP9 88 aa9.07□□□□□ -0.96
USP4-205ENST00000431357 SOX21Q9Y651 276 aaPredicted RBP9.07□□□□□ -0.96
USP4-205ENST00000431357 PGPA6NDG6 321 aa9.07□□□□□ -0.96
USP4-205ENST00000431357 K7EM74 188 aa9.07□□□□□ -0.96
USP4-205ENST00000431357 HYPMO75409 117 aa9.07□□□□□ -0.96
USP4-205ENST00000431357 ORM2P19652 201 aa9.07□□□□□ -0.96
USP4-205ENST00000431357 MRGPRG-AS1Q2M3A8 158 aa9.07□□□□□ -0.96
USP4-205ENST00000431357 C5orf17Q8NAS9 161 aa9.07□□□□□ -0.96
USP4-205ENST00000431357 OR1B1Q8NGR6 318 aa9.07□□□□□ -0.96
USP4-205ENST00000431357 RNASE6Q93091 150 aaKnown RBP9.07□□□□□ -0.96
USP4-205ENST00000431357 FMC1Q96HJ9 113 aa9.07□□□□□ -0.96
USP4-205ENST00000431357 TMEM133Q9H2Q1 129 aa9.07□□□□□ -0.96
USP4-205ENST00000431357 ZNF492Q9P255 531 aa9.07□□□□□ -0.96
USP4-205ENST00000431357 CTSZQ9UBR2 303 aa9.07□□□□□ -0.96
USP4-205ENST00000431357 COL6A3P12111 3177 aa9.06□□□□□ -0.96
USP4-205ENST00000431357 WDFY4Q6ZS81 3184 aa9.06□□□□□ -0.96
USP4-205ENST00000431357 C22orf46C9J442 243 aa9.06□□□□□ -0.96
USP4-205ENST00000431357 ENSAO43768 121 aaKnown RBP9.06□□□□□ -0.96
USP4-205ENST00000431357 HSBP1O75506 76 aa9.06□□□□□ -0.96
USP4-205ENST00000431357 TFPI2P48307 235 aa9.06□□□□□ -0.96
USP4-205ENST00000431357 TXN2Q99757 166 aa9.06□□□□□ -0.96
USP4-205ENST00000431357 MLST8Q9BVC4 326 aa9.06□□□□□ -0.96
USP4-205ENST00000431357 DYNLRB1Q9NP97 96 aa9.06□□□□□ -0.96
USP4-205ENST00000431357 RNF24Q9Y225 148 aa9.06□□□□□ -0.96
USP4-205ENST00000431357 A0A1B0GXF2 115 aa9.05□□□□□ -0.96
USP4-205ENST00000431357 HIGD1CA8MV81 97 aa9.05□□□□□ -0.96
USP4-205ENST00000431357 A8MWL6 223 aa9.05□□□□□ -0.96
USP4-205ENST00000431357 IGHV3-48P01763 117 aa9.05□□□□□ -0.96
USP4-205ENST00000431357 CRYGBP07316 175 aa9.05□□□□□ -0.96
USP4-205ENST00000431357 GNG5P63218 68 aa9.05□□□□□ -0.96
USP4-205ENST00000431357 PRR27Q6MZM9 219 aa9.05□□□□□ -0.96
USP4-205ENST00000431357 C8orf46Q8TAG6 207 aa9.05□□□□□ -0.96
USP4-205ENST00000431357 RPP21Q9H633 154 aaKnown RBP9.05□□□□□ -0.96
USP4-205ENST00000431357 TPSG1Q9NRR2 321 aa9.05□□□□□ -0.96
USP4-205ENST00000431357 SVILO95425 2214 aa9.05□□□□□ -0.96
USP4-205ENST00000431357 A0A1B0GV72 72 aa9.05□□□□□ -0.96
USP4-205ENST00000431357 MOSP00540 346 aa9.05□□□□□ -0.96
USP4-205ENST00000431357 NTF3P20783 257 aa9.05□□□□□ -0.96
USP4-205ENST00000431357 SCGB2A2Q13296 93 aa9.05□□□□□ -0.96
USP4-205ENST00000431357 TNXAQ16473 311 aa9.05□□□□□ -0.96
USP4-205ENST00000431357 GDF5OSQ5U4N7 250 aa9.05□□□□□ -0.96
USP4-205ENST00000431357 HCP5Q6MZN7 132 aa9.05□□□□□ -0.96
USP4-205ENST00000431357 BLNKQ8WV28 456 aa9.05□□□□□ -0.96
USP4-205ENST00000431357 PRSS22Q9GZN4 317 aa9.05□□□□□ -0.96
USP4-205ENST00000431357 GFRA4Q9GZZ7 299 aa9.05□□□□□ -0.96
USP4-205ENST00000431357 LAMTOR2Q9Y2Q5 125 aa9.05□□□□□ -0.96
USP4-205ENST00000431357 MUC3AQ02505 3323 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms