RNA–Protein interactions for RNA: ENST00000430104.5

SHH-202, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 677 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-202ENST00000430104 VSIRQ9H7M9 311 aa13.97□□□□□ -0.17
SHH-202ENST00000430104 C19orf73Q9NVV2 129 aa13.97□□□□□ -0.17
SHH-202ENST00000430104 A0A1W2PS18 150 aa13.96□□□□□ -0.17
SHH-202ENST00000430104 DFFBO76075 338 aa13.96□□□□□ -0.17
SHH-202ENST00000430104 HNRNPCP07910 306 aaKnown RBP eCLIP13.96□□□□□ -0.17
SHH-202ENST00000430104 CRYBB3P26998 211 aa13.96□□□□□ -0.17
SHH-202ENST00000430104 TAS2R30P59541 319 aa13.96□□□□□ -0.17
SHH-202ENST00000430104 RRAS2P62070 204 aaPredicted RBP13.96□□□□□ -0.17
SHH-202ENST00000430104 USF2Q15853 346 aaPredicted RBP13.96□□□□□ -0.17
SHH-202ENST00000430104 WFDC3Q8IUB2 231 aa13.96□□□□□ -0.17
SHH-202ENST00000430104 PBDC1Q9BVG4 233 aa13.96□□□□□ -0.17
SHH-202ENST00000430104 TMEM231Q9H6L2 316 aa13.96□□□□□ -0.17
SHH-202ENST00000430104 SRD5A3Q9H8P0 318 aa13.96□□□□□ -0.17
SHH-202ENST00000430104 OR4C46A6NHA9 309 aa13.95□□□□□ -0.18
SHH-202ENST00000430104 PMS2P5A8MQ11 134 aa13.95□□□□□ -0.18
SHH-202ENST00000430104 TSC22D2O75157 780 aa13.95□□□□□ -0.18
SHH-202ENST00000430104 FABP1P07148 127 aa13.95□□□□□ -0.18
SHH-202ENST00000430104 RAB32Q13637 225 aa13.95□□□□□ -0.18
SHH-202ENST00000430104 FAM90A2PQ658T7 463 aa13.95□□□□□ -0.18
SHH-202ENST00000430104 TMEM14EPQ6UXP3 125 aa13.95□□□□□ -0.18
SHH-202ENST00000430104 IGKV1OR2-108A0A075B7D4 117 aa13.94□□□□□ -0.18
SHH-202ENST00000430104 A8MZ25 164 aa13.94□□□□□ -0.18
SHH-202ENST00000430104 SSNA1O43805 119 aa13.94□□□□□ -0.18
SHH-202ENST00000430104 PVALBP20472 110 aaPredicted RBP13.94□□□□□ -0.18
SHH-202ENST00000430104 P2RY1P47900 373 aa13.94□□□□□ -0.18
SHH-202ENST00000430104 LYZP61626 148 aa13.94□□□□□ -0.18
SHH-202ENST00000430104 THAP8Q8NA92 274 aa13.94□□□□□ -0.18
SHH-202ENST00000430104 OR10P1Q8NGE3 313 aa13.94□□□□□ -0.18
SHH-202ENST00000430104 RNF125Q96EQ8 232 aa13.94□□□□□ -0.18
SHH-202ENST00000430104 GRAMD2BQ96HH9 432 aa13.94□□□□□ -0.18
SHH-202ENST00000430104 TRGV9Q99603 122 aa13.94□□□□□ -0.18
SHH-202ENST00000430104 RABAC1Q9UI14 185 aa13.94□□□□□ -0.18
SHH-202ENST00000430104 FAM24AA6NFZ4 105 aa13.93□□□□□ -0.18
SHH-202ENST00000430104 DNASE2O00115 360 aaPredicted RBP13.93□□□□□ -0.18
SHH-202ENST00000430104 NHLRC4P0CG21 123 aaPredicted RBP13.93□□□□□ -0.18
SHH-202ENST00000430104 CAV2P51636 162 aa13.93□□□□□ -0.18
SHH-202ENST00000430104 PAFAH1B2P68402 229 aa13.93□□□□□ -0.18
SHH-202ENST00000430104 IL15RAQ13261 267 aa13.93□□□□□ -0.18
SHH-202ENST00000430104 GATA2P23769 480 aaPredicted RBP13.92□□□□□ -0.18
SHH-202ENST00000430104 DLK1P80370 383 aa13.92□□□□□ -0.18
SHH-202ENST00000430104 ARL16Q0P5N6 197 aa13.92□□□□□ -0.18
SHH-202ENST00000430104 MS4A6AQ9H2W1 248 aa13.92□□□□□ -0.18
SHH-202ENST00000430104 MGAT4CQ9UBM8 478 aa13.92□□□□□ -0.18
SHH-202ENST00000430104 U3KQE9 123 aa13.92□□□□□ -0.18
SHH-202ENST00000430104 RBMY1BA6NDE4 496 aaKnown RBP13.91□□□□□ -0.18
SHH-202ENST00000430104 RBMY1EA6NEQ0 496 aaKnown RBP13.91□□□□□ -0.18
SHH-202ENST00000430104 PTTG1O95997 202 aa13.91□□□□□ -0.18
SHH-202ENST00000430104 CD5P06127 495 aa13.91□□□□□ -0.18
SHH-202ENST00000430104 RBMY1DP0C7P1 496 aaKnown RBP13.91□□□□□ -0.18
SHH-202ENST00000430104 LRRC37A5PQ49AS3 106 aa13.91□□□□□ -0.18
SHH-202ENST00000430104 C16orf54Q6UWD8 224 aa13.91□□□□□ -0.18
SHH-202ENST00000430104 TMEM144Q7Z5S9 345 aa13.91□□□□□ -0.18
SHH-202ENST00000430104 STXBP6Q8NFX7 210 aa13.91□□□□□ -0.18
SHH-202ENST00000430104 C11orf1Q9H5F2 150 aa13.91□□□□□ -0.18
SHH-202ENST00000430104 CST7O76096 145 aa13.9□□□□□ -0.18
SHH-202ENST00000430104 EIF2B2P49770 351 aaKnown RBP13.9□□□□□ -0.18
SHH-202ENST00000430104 HAGHQ16775 308 aa13.9□□□□□ -0.18
SHH-202ENST00000430104 ODF3L2Q3SX64 289 aa13.9□□□□□ -0.18
SHH-202ENST00000430104 TMEM182Q6ZP80 229 aaPredicted RBP13.9□□□□□ -0.18
SHH-202ENST00000430104 PPP1R14BQ96C90 147 aa13.9□□□□□ -0.18
SHH-202ENST00000430104 NPVFQ9HCQ7 196 aa13.9□□□□□ -0.18
SHH-202ENST00000430104 ALG5Q9Y673 324 aa13.9□□□□□ -0.18
SHH-202ENST00000430104 CYP2G1PQ6ZSU1 146 aa13.89□□□□□ -0.19
SHH-202ENST00000430104 APRG1Q8IVJ8 170 aa13.89□□□□□ -0.19
SHH-202ENST00000430104 TMEM217Q8N7C4 229 aa13.89□□□□□ -0.19
SHH-202ENST00000430104 BPIFCQ8NFQ6 507 aa13.89□□□□□ -0.19
SHH-202ENST00000430104 CITED4Q96RK1 184 aa13.89□□□□□ -0.19
SHH-202ENST00000430104 NMES1Q9C002 83 aa13.89□□□□□ -0.19
SHH-202ENST00000430104 ZMAT4Q9H898 229 aa13.89□□□□□ -0.19
SHH-202ENST00000430104 U3KQK5 164 aa13.89□□□□□ -0.19
SHH-202ENST00000430104 BUB3O43684 328 aa13.88□□□□□ -0.19
SHH-202ENST00000430104 RLN2P04090 185 aa13.88□□□□□ -0.19
SHH-202ENST00000430104 ORM2P19652 201 aa13.88□□□□□ -0.19
SHH-202ENST00000430104 H2BFSP57053 126 aa13.88□□□□□ -0.19
SHH-202ENST00000430104 SLC38A11Q08AI6 406 aa13.88□□□□□ -0.19
SHH-202ENST00000430104 ZNF124Q15973 351 aa13.88□□□□□ -0.19
SHH-202ENST00000430104 LINC00322Q6ZN03 302 aaPredicted RBP13.88□□□□□ -0.19
SHH-202ENST00000430104 GLMPQ8WWB7 406 aa13.88□□□□□ -0.19
SHH-202ENST00000430104 IGSF23A1L1A6 192 aa13.87□□□□□ -0.19
SHH-202ENST00000430104 HELTA6NFD8 242 aa13.87□□□□□ -0.19
SHH-202ENST00000430104 DEDDO75618 318 aa13.87□□□□□ -0.19
SHH-202ENST00000430104 CMC4P56277 68 aaPredicted RBP13.87□□□□□ -0.19
SHH-202ENST00000430104 CYCSP99999 105 aaKnown RBP13.87□□□□□ -0.19
SHH-202ENST00000430104 FAM24BQ8N5W8 94 aa13.87□□□□□ -0.19
SHH-202ENST00000430104 TMEM252Q8N6L7 170 aa13.87□□□□□ -0.19
SHH-202ENST00000430104 OR1B1Q8NGR6 318 aa13.87□□□□□ -0.19
SHH-202ENST00000430104 MAP6D1Q9H9H5 199 aa13.87□□□□□ -0.19
SHH-202ENST00000430104 LYRM2Q9NU23 88 aaPredicted RBP13.87□□□□□ -0.19
SHH-202ENST00000430104 DOK5Q9P104 306 aa13.87□□□□□ -0.19
SHH-202ENST00000430104 PFDN2Q9UHV9 154 aa13.87□□□□□ -0.19
SHH-202ENST00000430104 DNAH9Q9NYC9 4486 aa13.87□□□□□ -0.19
SHH-202ENST00000430104 COL7A1Q02388 2944 aa13.86□□□□□ -0.19
SHH-202ENST00000430104 LOC102724200A0A096LPH7 203 aaPredicted RBP13.86□□□□□ -0.19
SHH-202ENST00000430104 FNDC10F2Z333 226 aa13.86□□□□□ -0.19
SHH-202ENST00000430104 CFDP00746 253 aaPredicted RBP13.86□□□□□ -0.19
SHH-202ENST00000430104 TEPPQ6URK8 271 aa13.86□□□□□ -0.19
SHH-202ENST00000430104 SIGLEC15Q6ZMC9 328 aa13.86□□□□□ -0.19
SHH-202ENST00000430104 STPG3Q8N7X2 389 aa13.86□□□□□ -0.19
SHH-202ENST00000430104 RCHY1Q96PM5 261 aa13.86□□□□□ -0.19
SHH-202ENST00000430104 GGACTQ9BVM4 153 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms