RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 DPM3Q9P2X0 92 aa11.19□□□□□ -0.62
CCDC88A-204ENST00000413716 C1QAP02745 245 aa11.19□□□□□ -0.62
CCDC88A-204ENST00000413716 CMC4P56277 68 aaPredicted RBP11.19□□□□□ -0.62
CCDC88A-204ENST00000413716 IGHV3-73A0A0B4J1V6 119 aa11.19□□□□□ -0.62
CCDC88A-204ENST00000413716 F8W1H4 67 aa11.19□□□□□ -0.62
CCDC88A-204ENST00000413716 NBL1P41271 181 aa11.19□□□□□ -0.62
CCDC88A-204ENST00000413716 Q6ZS52 159 aa11.19□□□□□ -0.62
CCDC88A-204ENST00000413716 RPRMLQ8N4K4 120 aa11.19□□□□□ -0.62
CCDC88A-204ENST00000413716 OVOL1O14753 267 aa11.19□□□□□ -0.62
CCDC88A-204ENST00000413716 MSGN1A6NI15 193 aa11.19□□□□□ -0.62
CCDC88A-204ENST00000413716 IL18BPO95998 194 aa11.19□□□□□ -0.62
CCDC88A-204ENST00000413716 IGHV3OR16-8A0A075B7F1 116 aa11.19□□□□□ -0.62
CCDC88A-204ENST00000413716 VCYO14598 125 aa11.19□□□□□ -0.62
CCDC88A-204ENST00000413716 CRIM1Q9NZV1 1036 aa11.19□□□□□ -0.62
CCDC88A-204ENST00000413716 TRAV12-1A0A0B4J245 112 aa11.18□□□□□ -0.62
CCDC88A-204ENST00000413716 ACP7Q6ZNF0 438 aa11.18□□□□□ -0.62
CCDC88A-204ENST00000413716 TAF1LQ8IZX4 1826 aa11.18□□□□□ -0.62
CCDC88A-204ENST00000413716 TCRBV4S1A1TA0A5B7 111 aa11.18□□□□□ -0.62
CCDC88A-204ENST00000413716 KCNK17Q96T54 332 aa11.18□□□□□ -0.62
CCDC88A-204ENST00000413716 SEC61GP60059 68 aa11.18□□□□□ -0.62
CCDC88A-204ENST00000413716 C1orf100Q5SVJ3 147 aa11.18□□□□□ -0.62
CCDC88A-204ENST00000413716 FAM168AQ92567 244 aa11.18□□□□□ -0.62
CCDC88A-204ENST00000413716 NYNRINQ9P2P1 1898 aaKnown RBP11.18□□□□□ -0.62
CCDC88A-204ENST00000413716 HCFC1P51610 2035 aa11.18□□□□□ -0.62
CCDC88A-204ENST00000413716 PRR14LQ5THK1 2151 aa11.18□□□□□ -0.62
CCDC88A-204ENST00000413716 TMEM240Q5SV17 173 aa11.18□□□□□ -0.62
CCDC88A-204ENST00000413716 COX14Q96I36 57 aa11.18□□□□□ -0.62
CCDC88A-204ENST00000413716 LSM4Q9Y4Z0 139 aaKnown RBP11.18□□□□□ -0.62
CCDC88A-204ENST00000413716 NPIPB5A8MRT5 1133 aa11.17□□□□□ -0.62
CCDC88A-204ENST00000413716 SCRT1Q9BWW7 348 aa11.17□□□□□ -0.62
CCDC88A-204ENST00000413716 C1orf194Q5T5A4 169 aa11.17□□□□□ -0.62
CCDC88A-204ENST00000413716 NGFRP08138 427 aa11.17□□□□□ -0.62
CCDC88A-204ENST00000413716 TMEM131Q92545 1883 aa11.17□□□□□ -0.62
CCDC88A-204ENST00000413716 NBR2O15453 112 aa11.17□□□□□ -0.62
CCDC88A-204ENST00000413716 FCN3O75636 299 aa11.17□□□□□ -0.62
CCDC88A-204ENST00000413716 CELA2BP08218 269 aaPredicted RBP11.17□□□□□ -0.62
CCDC88A-204ENST00000413716 WFDC9Q8NEX5 89 aa11.17□□□□□ -0.62
CCDC88A-204ENST00000413716 SLC25A39Q9BZJ4 359 aaPredicted RBP11.17□□□□□ -0.62
CCDC88A-204ENST00000413716 ZNF561-AS1K7EIQ3 104 aa11.17□□□□□ -0.62
CCDC88A-204ENST00000413716 LHBP01229 141 aa11.17□□□□□ -0.62
CCDC88A-204ENST00000413716 TCF15Q12870 199 aa11.17□□□□□ -0.62
CCDC88A-204ENST00000413716 IMMP1LQ96LU5 166 aa11.17□□□□□ -0.62
CCDC88A-204ENST00000413716 TMEM242Q9NWH2 141 aa11.17□□□□□ -0.62
CCDC88A-204ENST00000413716 TNRC6CQ9HCJ0 1690 aaKnown RBP11.17□□□□□ -0.62
CCDC88A-204ENST00000413716 TRGV1A0A0A0MS02 117 aa11.17□□□□□ -0.62
CCDC88A-204ENST00000413716 CRLF1O75462 422 aa11.17□□□□□ -0.62
CCDC88A-204ENST00000413716 C15orf61A6NNL5 157 aa11.17□□□□□ -0.62
CCDC88A-204ENST00000413716 FAM60AQ9NP50 221 aa11.17□□□□□ -0.62
CCDC88A-204ENST00000413716 LHFPL6Q9Y693 200 aa11.17□□□□□ -0.62
CCDC88A-204ENST00000413716 IGHV1OR15-9A0A0B4J2B8 117 aa11.16□□□□□ -0.62
CCDC88A-204ENST00000413716 IGHG2P01859 326 aa11.16□□□□□ -0.62
CCDC88A-204ENST00000413716 FHL5Q5TD97 284 aa11.16□□□□□ -0.62
CCDC88A-204ENST00000413716 C1orf159Q96HA4 380 aa11.16□□□□□ -0.62
CCDC88A-204ENST00000413716 PCDH15Q96QU1 1955 aa11.16□□□□□ -0.62
CCDC88A-204ENST00000413716 LINC01565O15544 149 aa11.16□□□□□ -0.62
CCDC88A-204ENST00000413716 hDV102S1A0JD36 115 aa11.16□□□□□ -0.62
CCDC88A-204ENST00000413716 PGFP49763 221 aa11.16□□□□□ -0.62
CCDC88A-204ENST00000413716 SELENOKQ9Y6D0 94 aa11.16□□□□□ -0.62
CCDC88A-204ENST00000413716 NRN1LQ496H8 165 aa11.16□□□□□ -0.62
CCDC88A-204ENST00000413716 HEPN1Q6WQI6 88 aa11.16□□□□□ -0.62
CCDC88A-204ENST00000413716 COLCA1Q6ZS62 124 aa11.16□□□□□ -0.62
CCDC88A-204ENST00000413716 SPATA25Q9BR10 227 aa11.16□□□□□ -0.62
CCDC88A-204ENST00000413716 ADAMTSL1Q8N6G6 1762 aa11.16□□□□□ -0.62
CCDC88A-204ENST00000413716 EFEMP2O95967 443 aa11.15□□□□□ -0.62
CCDC88A-204ENST00000413716 COX5BP10606 129 aa11.15□□□□□ -0.62
CCDC88A-204ENST00000413716 DMRTC2Q8IXT2 367 aaPredicted RBP11.15□□□□□ -0.62
CCDC88A-204ENST00000413716 HIST3H2BBQ8N257 126 aa11.15□□□□□ -0.62
CCDC88A-204ENST00000413716 C1QL4Q86Z23 238 aa11.15□□□□□ -0.62
CCDC88A-204ENST00000413716 PAPPA2Q9BXP8 1791 aa11.15□□□□□ -0.62
CCDC88A-204ENST00000413716 ZNF474Q6S9Z5 364 aaPredicted RBP11.15□□□□□ -0.62
CCDC88A-204ENST00000413716 CSTL1Q9H114 145 aa11.15□□□□□ -0.62
CCDC88A-204ENST00000413716 TRBV5-7A0A0A0MS05 114 aa11.15□□□□□ -0.62
CCDC88A-204ENST00000413716 LTBRP36941 435 aa11.15□□□□□ -0.62
CCDC88A-204ENST00000413716 SPXQ9BT56 116 aa11.15□□□□□ -0.62
CCDC88A-204ENST00000413716 LY75O60449 1722 aa11.15□□□□□ -0.62
CCDC88A-204ENST00000413716 IGHV1-45A0A0A0MS14 117 aa11.15□□□□□ -0.62
CCDC88A-204ENST00000413716 APOBEC3AP31941 199 aaPredicted RBP11.15□□□□□ -0.62
CCDC88A-204ENST00000413716 LCNL1Q6ZST4 164 aa11.15□□□□□ -0.62
CCDC88A-204ENST00000413716 MYEOVQ96EZ4 313 aa11.15□□□□□ -0.62
CCDC88A-204ENST00000413716 EREGO14944 169 aa11.15□□□□□ -0.63
CCDC88A-204ENST00000413716 IGHV3-11P01762 117 aa11.15□□□□□ -0.63
CCDC88A-204ENST00000413716 TIMP3P35625 211 aa11.15□□□□□ -0.63
CCDC88A-204ENST00000413716 PSG8Q9UQ74 426 aa11.15□□□□□ -0.63
CCDC88A-204ENST00000413716 A0A0J9YW62 118 aa11.14□□□□□ -0.63
CCDC88A-204ENST00000413716 SHISA9B4DS77 424 aa11.14□□□□□ -0.63
CCDC88A-204ENST00000413716 SYS1-DBNDD2H3BUS1 97 aa11.14□□□□□ -0.63
CCDC88A-204ENST00000413716 KLRD1Q13241 179 aa11.14□□□□□ -0.63
CCDC88A-204ENST00000413716 ANKRD29Q8N6D5 301 aa11.14□□□□□ -0.63
CCDC88A-204ENST00000413716 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.14□□□□□ -0.63
CCDC88A-204ENST00000413716 WBP1LQ9NX94 342 aa11.14□□□□□ -0.63
CCDC88A-204ENST00000413716 PPIFP30405 207 aaKnown RBP11.14□□□□□ -0.63
CCDC88A-204ENST00000413716 MPV17L2Q567V2 206 aa11.14□□□□□ -0.63
CCDC88A-204ENST00000413716 SLC25A47Q6Q0C1 308 aa11.14□□□□□ -0.63
CCDC88A-204ENST00000413716 ZAR1Q86SH2 424 aa11.14□□□□□ -0.63
CCDC88A-204ENST00000413716 C8orf46Q8TAG6 207 aa11.14□□□□□ -0.63
CCDC88A-204ENST00000413716 FRMPD3Q5JV73 1810 aa11.14□□□□□ -0.63
CCDC88A-204ENST00000413716 ZNF876PQ49A33 203 aa11.14□□□□□ -0.63
CCDC88A-204ENST00000413716 LY6G5BQ8NDX9 201 aa11.14□□□□□ -0.63
CCDC88A-204ENST00000413716 A0A1W2PPV9 198 aa11.13□□□□□ -0.63
CCDC88A-204ENST00000413716 IGHMP01871 453 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms