RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 TRRAPQ9Y4A5 3859 aa4.84□□□□□ -1.64
USP40-202ENST00000409945 WNK1Q9H4A3 2382 aa4.84□□□□□ -1.64
USP40-202ENST00000409945 IGKV1-6A0A0C4DH72 117 aa4.84□□□□□ -1.64
USP40-202ENST00000409945 HRASP01112 189 aa4.84□□□□□ -1.64
USP40-202ENST00000409945 IGHG4P01861 327 aa4.84□□□□□ -1.64
USP40-202ENST00000409945 PMP2P02689 132 aa4.84□□□□□ -1.64
USP40-202ENST00000409945 S100A11P31949 105 aa4.84□□□□□ -1.64
USP40-202ENST00000409945 RAB14P61106 215 aa4.84□□□□□ -1.64
USP40-202ENST00000409945 SURF2Q15527 256 aaPredicted RBP4.84□□□□□ -1.64
USP40-202ENST00000409945 MSMO1Q15800 293 aa4.84□□□□□ -1.64
USP40-202ENST00000409945 TMEM128Q5BJH2 165 aa4.84□□□□□ -1.64
USP40-202ENST00000409945 ZNF562Q6V9R5 426 aa4.84□□□□□ -1.64
USP40-202ENST00000409945 Q6ZVQ6 151 aa4.84□□□□□ -1.64
USP40-202ENST00000409945 PPP1R27Q86WC6 154 aa4.84□□□□□ -1.64
USP40-202ENST00000409945 CMTM1Q8IZ96 169 aa4.84□□□□□ -1.64
USP40-202ENST00000409945 OR4S2Q8NH73 311 aa4.84□□□□□ -1.64
USP40-202ENST00000409945 TCTEX1D2Q8WW35 142 aa4.84□□□□□ -1.64
USP40-202ENST00000409945 PARD6GQ9BYG4 376 aaPredicted RBP4.84□□□□□ -1.64
USP40-202ENST00000409945 ZNF355PQ9NSJ1 428 aa4.84□□□□□ -1.64
USP40-202ENST00000409945 COMMD9Q9P000 198 aa4.84□□□□□ -1.64
USP40-202ENST00000409945 FXYD6-FXYD2A0A087WZ82 144 aa4.83□□□□□ -1.64
USP40-202ENST00000409945 A0A0B4J2A0 478 aa4.83□□□□□ -1.64
USP40-202ENST00000409945 C9orf170A2RU37 121 aa4.83□□□□□ -1.64
USP40-202ENST00000409945 LINC00862A6NCI5 91 aa4.83□□□□□ -1.64
USP40-202ENST00000409945 CRYZL1O95825 349 aa4.83□□□□□ -1.64
USP40-202ENST00000409945 FCGR2CP31995 323 aa4.83□□□□□ -1.64
USP40-202ENST00000409945 CYCSP99999 105 aaKnown RBP4.83□□□□□ -1.64
USP40-202ENST00000409945 PPP1R1AQ13522 171 aa4.83□□□□□ -1.64
USP40-202ENST00000409945 EXOSC2Q13868 293 aaKnown RBP4.83□□□□□ -1.64
USP40-202ENST00000409945 PSG5Q15238 335 aa4.83□□□□□ -1.64
USP40-202ENST00000409945 AKIRIN2Q53H80 203 aa4.83□□□□□ -1.64
USP40-202ENST00000409945 UNQ5815/PRO19632Q6UWF5 114 aa4.83□□□□□ -1.64
USP40-202ENST00000409945 LHFPL1Q86WI0 220 aa4.83□□□□□ -1.64
USP40-202ENST00000409945 ARPC1AQ92747 370 aa4.83□□□□□ -1.64
USP40-202ENST00000409945 MRGPRFQ96AM1 343 aa4.83□□□□□ -1.64
USP40-202ENST00000409945 CXorf58Q96LI9 332 aa4.83□□□□□ -1.64
USP40-202ENST00000409945 UBE2E2Q96LR5 201 aa4.83□□□□□ -1.64
USP40-202ENST00000409945 CLCC1Q96S66 551 aa4.83□□□□□ -1.64
USP40-202ENST00000409945 HSPB9Q9BQS6 159 aa4.83□□□□□ -1.64
USP40-202ENST00000409945 PDCD10Q9BUL8 212 aa4.83□□□□□ -1.64
USP40-202ENST00000409945 PARP12Q9H0J9 701 aaKnown RBP4.83□□□□□ -1.64
USP40-202ENST00000409945 FXYD6Q9H0Q3 95 aa4.83□□□□□ -1.64
USP40-202ENST00000409945 EHFQ9NZC4 300 aa4.83□□□□□ -1.64
USP40-202ENST00000409945 SHPKQ9UHJ6 478 aa4.83□□□□□ -1.64
USP40-202ENST00000409945 WSB1Q9Y6I7 421 aa4.83□□□□□ -1.64
USP40-202ENST00000409945 IGHV7-81A0A0B4J1V7 117 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 A0A0D9SG52 128 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 A0A0G2JLM5 398 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 ARPC5O15511 151 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 CYB5BO43169 146 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 SIX6O95475 246 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 MPC2O95563 127 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 CA2P00918 260 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 IGKV1-16P04430 117 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 OR8U8P0C7N1 319 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 CXCL2P19875 107 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 CNTFRP26992 372 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 ZNF345Q14585 488 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 FXYD3Q14802 87 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 CLLU1Q5K131 121 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 COQ8AQ8NI60 647 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 MARCH1Q8TCQ1 289 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 C4orf3Q8WVX3 66 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 SPIN2AQ99865 258 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 SPIN2BQ9BPZ2 258 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 OVOL2Q9BRP0 275 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 ARL6Q9H0F7 186 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 CLEC5AQ9NY25 188 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 VWFP04275 2813 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 TRAV25A0A0B4J276 109 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 TEX46H3BTG2 121 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 H3BUA1 57 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 PPYP01298 95 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 SLC25A4P12235 298 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 AKR1C4P17516 323 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 PSMB8P28062 276 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 RAB9AP51151 201 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 CNN1P51911 297 aaKnown RBP4.82□□□□□ -1.64
USP40-202ENST00000409945 FXYD4P59646 89 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 UBE2KP61086 200 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 ERVK-16P61578 105 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 OR2F1Q13607 317 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 TNXAQ16473 311 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 TCTEX1D4Q5JR98 221 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 C10orf99Q6UWK7 81 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 TMUB2Q71RG4 321 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 ZNF546Q86UE3 836 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 SLC51BQ86UW2 128 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 WFDC9Q8NEX5 89 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 LRRC20Q8TCA0 184 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 CACNG8Q8WXS5 425 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 NMES1Q9C002 83 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 GEMIN7Q9H840 131 aaKnown RBP4.82□□□□□ -1.64
USP40-202ENST00000409945 C14orf166Q9Y224 244 aaKnown RBP4.82□□□□□ -1.64
USP40-202ENST00000409945 SELENOKQ9Y6D0 94 aa4.82□□□□□ -1.64
USP40-202ENST00000409945 IGKV1D-8A0A087WSZ0 117 aa4.81□□□□□ -1.64
USP40-202ENST00000409945 G3V318 75 aa4.81□□□□□ -1.64
USP40-202ENST00000409945 G3V4G9 280 aa4.81□□□□□ -1.64
USP40-202ENST00000409945 SFT2D2O95562 160 aa4.81□□□□□ -1.64
USP40-202ENST00000409945 MAS1LP35410 378 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms