RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 ABHD5Q8WTS1 349 aa10.58□□□□□ -0.72
LIMS1-204ENST00000409441 NPFFR1Q9GZQ6 430 aa10.58□□□□□ -0.72
LIMS1-204ENST00000409441 TPSG1Q9NRR2 321 aa10.58□□□□□ -0.72
LIMS1-204ENST00000409441 CUBNO60494 3623 aa10.57□□□□□ -0.72
LIMS1-204ENST00000409441 CGB1A6NKQ9 187 aa10.57□□□□□ -0.72
LIMS1-204ENST00000409441 CLN5O75503 358 aa10.57□□□□□ -0.72
LIMS1-204ENST00000409441 DEFA4P12838 97 aa10.57□□□□□ -0.72
LIMS1-204ENST00000409441 RPL15P61313 204 aaKnown RBP10.57□□□□□ -0.72
LIMS1-204ENST00000409441 GAMTQ14353 236 aa10.57□□□□□ -0.72
LIMS1-204ENST00000409441 ZNF674Q2M3X9 581 aa10.57□□□□□ -0.72
LIMS1-204ENST00000409441 Q6ZS46 218 aa10.57□□□□□ -0.72
LIMS1-204ENST00000409441 SLC16A13Q7RTY0 426 aa10.57□□□□□ -0.72
LIMS1-204ENST00000409441 RPUSD4Q96CM3 377 aaKnown RBP10.57□□□□□ -0.72
LIMS1-204ENST00000409441 GCHFRP30047 84 aa10.56□□□□□ -0.72
LIMS1-204ENST00000409441 RPL23P62829 140 aaKnown RBP10.56□□□□□ -0.72
LIMS1-204ENST00000409441 ADIRFQ15847 76 aa10.56□□□□□ -0.72
LIMS1-204ENST00000409441 C9orf152Q5JTZ5 239 aa10.56□□□□□ -0.72
LIMS1-204ENST00000409441 ZFP82Q8N141 532 aa10.56□□□□□ -0.72
LIMS1-204ENST00000409441 C2CD4CQ8TF44 421 aa10.56□□□□□ -0.72
LIMS1-204ENST00000409441 Q8WTZ3 238 aa10.56□□□□□ -0.72
LIMS1-204ENST00000409441 RNF2Q99496 336 aa10.56□□□□□ -0.72
LIMS1-204ENST00000409441 PRSS22Q9GZN4 317 aa10.56□□□□□ -0.72
LIMS1-204ENST00000409441 DOK5Q9P104 306 aa10.56□□□□□ -0.72
LIMS1-204ENST00000409441 TNCP24821 2201 aa10.56□□□□□ -0.72
LIMS1-204ENST00000409441 S100A6P06703 90 aa10.55□□□□□ -0.72
LIMS1-204ENST00000409441 OR10J1P30954 320 aa10.55□□□□□ -0.72
LIMS1-204ENST00000409441 WT1-ASQ06250 92 aa10.55□□□□□ -0.72
LIMS1-204ENST00000409441 PRSS8Q16651 343 aa10.55□□□□□ -0.72
LIMS1-204ENST00000409441 MRGPRG-AS1Q2M3A8 158 aa10.55□□□□□ -0.72
LIMS1-204ENST00000409441 CST9LP1Q5W188 147 aa10.55□□□□□ -0.72
LIMS1-204ENST00000409441 PVRIGQ6DKI7 326 aa10.55□□□□□ -0.72
LIMS1-204ENST00000409441 ZNF114Q8NC26 417 aa10.55□□□□□ -0.72
LIMS1-204ENST00000409441 ANAPC16Q96DE5 110 aa10.55□□□□□ -0.72
LIMS1-204ENST00000409441 FUT9Q9Y231 359 aa10.55□□□□□ -0.72
LIMS1-204ENST00000409441 LINC01548A6NM66 108 aa10.55□□□□□ -0.72
LIMS1-204ENST00000409441 E7EUB6 86 aa10.55□□□□□ -0.72
LIMS1-204ENST00000409441 HLA-DRB1P01911 266 aa10.55□□□□□ -0.72
LIMS1-204ENST00000409441 OR5G3P0C626 314 aa10.55□□□□□ -0.72
LIMS1-204ENST00000409441 RPL27AP46776 148 aaKnown RBP10.55□□□□□ -0.72
LIMS1-204ENST00000409441 ATP5G3P48201 142 aa10.55□□□□□ -0.72
LIMS1-204ENST00000409441 CX3CL1P78423 397 aa10.55□□□□□ -0.72
LIMS1-204ENST00000409441 ETFRF1Q6IPR1 90 aa10.55□□□□□ -0.72
LIMS1-204ENST00000409441 ZNF562Q6V9R5 426 aa10.55□□□□□ -0.72
LIMS1-204ENST00000409441 Q6ZSV7 163 aa10.55□□□□□ -0.72
LIMS1-204ENST00000409441 HSPB9Q9BQS6 159 aa10.55□□□□□ -0.72
LIMS1-204ENST00000409441 MRPL32Q9BYC8 188 aaKnown RBP10.55□□□□□ -0.72
LIMS1-204ENST00000409441 TMEM167BQ9NRX6 74 aa10.55□□□□□ -0.72
LIMS1-204ENST00000409441 TECRQ9NZ01 308 aaKnown RBP10.55□□□□□ -0.72
LIMS1-204ENST00000409441 TRBV24-1A0A075B6N3 115 aa10.54□□□□□ -0.72
LIMS1-204ENST00000409441 IGKV1OR2-108A0A075B7D4 117 aa10.54□□□□□ -0.72
LIMS1-204ENST00000409441 IGHV7-81A0A0B4J1V7 117 aa10.54□□□□□ -0.72
LIMS1-204ENST00000409441 C5orf52A6NGY3 159 aa10.54□□□□□ -0.72
LIMS1-204ENST00000409441 ACTL6BO94805 426 aa10.54□□□□□ -0.72
LIMS1-204ENST00000409441 CNIH1O95406 144 aa10.54□□□□□ -0.72
LIMS1-204ENST00000409441 CXCL1P09341 107 aa10.54□□□□□ -0.72
LIMS1-204ENST00000409441 RPS10P46783 165 aaKnown RBP10.54□□□□□ -0.72
LIMS1-204ENST00000409441 COMPP49747 757 aaPredicted RBP10.54□□□□□ -0.72
LIMS1-204ENST00000409441 TAS2R45P59539 299 aa10.54□□□□□ -0.72
LIMS1-204ENST00000409441 UBE2G2P60604 165 aa10.54□□□□□ -0.72
LIMS1-204ENST00000409441 GNB1P62873 340 aa10.54□□□□□ -0.72
LIMS1-204ENST00000409441 FAM78BQ5VT40 261 aa10.54□□□□□ -0.72
LIMS1-204ENST00000409441 ZNF343Q6P1L6 599 aa10.54□□□□□ -0.72
LIMS1-204ENST00000409441 THAP8Q8NA92 274 aa10.54□□□□□ -0.72
LIMS1-204ENST00000409441 ZNF702PQ9H963 129 aa10.54□□□□□ -0.72
LIMS1-204ENST00000409441 SEPSECSQ9HD40 501 aaKnown RBP10.54□□□□□ -0.72
LIMS1-204ENST00000409441 CORTO00230 105 aa10.53□□□□□ -0.72
LIMS1-204ENST00000409441 UBE2CO00762 179 aa10.53□□□□□ -0.72
LIMS1-204ENST00000409441 IGHG2P01859 326 aa10.53□□□□□ -0.72
LIMS1-204ENST00000409441 AREGP15514 252 aa10.53□□□□□ -0.72
LIMS1-204ENST00000409441 NPPCP23582 126 aa10.53□□□□□ -0.72
LIMS1-204ENST00000409441 SELENOTP62341 195 aa10.53□□□□□ -0.72
LIMS1-204ENST00000409441 FXYD3Q14802 87 aa10.53□□□□□ -0.72
LIMS1-204ENST00000409441 C10orf55Q5SWW7 151 aa10.53□□□□□ -0.72
LIMS1-204ENST00000409441 SPATA31B1PQ5VZV4 182 aa10.53□□□□□ -0.72
LIMS1-204ENST00000409441 PQLC2Q6ZP29 291 aa10.53□□□□□ -0.72
LIMS1-204ENST00000409441 Q8N2B8 174 aa10.53□□□□□ -0.72
LIMS1-204ENST00000409441 C11orf52Q96A22 123 aa10.53□□□□□ -0.72
LIMS1-204ENST00000409441 SRSF8Q9BRL6 282 aaKnown RBP10.53□□□□□ -0.72
LIMS1-204ENST00000409441 IGLC7A0M8Q6 106 aa10.52□□□□□ -0.73
LIMS1-204ENST00000409441 H7BYZ3 331 aa10.52□□□□□ -0.73
LIMS1-204ENST00000409441 SSBP2P81877 361 aaPredicted RBP10.52□□□□□ -0.73
LIMS1-204ENST00000409441 TNXAQ16473 311 aa10.52□□□□□ -0.73
LIMS1-204ENST00000409441 MIR17HGQ75NE6 70 aa10.52□□□□□ -0.73
LIMS1-204ENST00000409441 OR1L4Q8NGR5 311 aa10.52□□□□□ -0.73
LIMS1-204ENST00000409441 OR2T6Q8NHC8 308 aa10.52□□□□□ -0.73
LIMS1-204ENST00000409441 FAM210BQ96KR6 192 aa10.52□□□□□ -0.73
LIMS1-204ENST00000409441 UHRF2Q96PU4 802 aa10.52□□□□□ -0.73
LIMS1-204ENST00000409441 URGCP-MRPS24S4R325 110 aa10.52□□□□□ -0.73
LIMS1-204ENST00000409441 C2CD3Q4AC94 2353 aa10.52□□□□□ -0.73
LIMS1-204ENST00000409441 TGIF2-C20orf24A0A0A6YYL0 155 aa10.51□□□□□ -0.73
LIMS1-204ENST00000409441 TCRBV4S1A1TA0A5B7 111 aa10.51□□□□□ -0.73
LIMS1-204ENST00000409441 NDUFA7O95182 113 aa10.51□□□□□ -0.73
LIMS1-204ENST00000409441 CRYGCP07315 174 aa10.51□□□□□ -0.73
LIMS1-204ENST00000409441 S100PP25815 95 aa10.51□□□□□ -0.73
LIMS1-204ENST00000409441 SNRPEP62304 92 aaKnown RBP10.51□□□□□ -0.73
LIMS1-204ENST00000409441 LINC00518Q8N0U6 118 aa10.51□□□□□ -0.73
LIMS1-204ENST00000409441 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.51□□□□□ -0.73
LIMS1-204ENST00000409441 ACY3Q96HD9 319 aa10.51□□□□□ -0.73
LIMS1-204ENST00000409441 OR5B12Q96R08 314 aa10.51□□□□□ -0.73
LIMS1-204ENST00000409441 PFDN5Q99471 154 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms