RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 CEP250Q9BV73 2442 aa10.2□□□□□ -0.78
SHMT1-205ENST00000395684 C2orf70A6NJV1 201 aa10.2□□□□□ -0.78
SHMT1-205ENST00000395684 C17orf100A8MU93 164 aa10.2□□□□□ -0.78
SHMT1-205ENST00000395684 SLC25A5P05141 298 aaKnown RBP10.2□□□□□ -0.78
SHMT1-205ENST00000395684 CEACAM8P31997 349 aaPredicted RBP10.2□□□□□ -0.78
SHMT1-205ENST00000395684 ADIPOQQ15848 244 aa10.2□□□□□ -0.78
SHMT1-205ENST00000395684 DMRTA1Q5VZB9 504 aa10.2□□□□□ -0.78
SHMT1-205ENST00000395684 HCP5Q6MZN7 132 aa10.2□□□□□ -0.78
SHMT1-205ENST00000395684 RNASEKQ6P5S7 137 aaKnown RBP10.2□□□□□ -0.78
SHMT1-205ENST00000395684 KLHDC1Q8N7A1 406 aa10.2□□□□□ -0.78
SHMT1-205ENST00000395684 OR1B1Q8NGR6 318 aa10.2□□□□□ -0.78
SHMT1-205ENST00000395684 MLST8Q9BVC4 326 aa10.2□□□□□ -0.78
SHMT1-205ENST00000395684 KLF12Q9Y4X4 402 aa10.2□□□□□ -0.78
SHMT1-205ENST00000395684 Q56UQ5 140 aa10.2□□□□□ -0.78
SHMT1-205ENST00000395684 SPATA12Q7Z6I5 190 aa10.2□□□□□ -0.78
SHMT1-205ENST00000395684 OR8B3Q8NGG8 313 aa10.2□□□□□ -0.78
SHMT1-205ENST00000395684 OR2D3Q8NGH3 330 aa10.2□□□□□ -0.78
SHMT1-205ENST00000395684 TMEM186Q96B77 213 aa10.2□□□□□ -0.78
SHMT1-205ENST00000395684 OR8B2Q96RD0 313 aa10.2□□□□□ -0.78
SHMT1-205ENST00000395684 RPH3ALQ9UNE2 315 aa10.2□□□□□ -0.78
SHMT1-205ENST00000395684 SSUH2Q9Y2M2 353 aa10.2□□□□□ -0.78
SHMT1-205ENST00000395684 WASHC3Q9Y3C0 194 aa10.2□□□□□ -0.78
SHMT1-205ENST00000395684 K7EM74 188 aa10.19□□□□□ -0.78
SHMT1-205ENST00000395684 CD24P25063 80 aa10.19□□□□□ -0.78
SHMT1-205ENST00000395684 TSPOP30536 169 aa10.19□□□□□ -0.78
SHMT1-205ENST00000395684 PMCHL1Q16048 86 aa10.19□□□□□ -0.78
SHMT1-205ENST00000395684 GPR82Q96P67 336 aa10.19□□□□□ -0.78
SHMT1-205ENST00000395684 CHRDL1Q9BU40 450 aa10.19□□□□□ -0.78
SHMT1-205ENST00000395684 PPIAL4EA0A075B759 164 aa10.19□□□□□ -0.78
SHMT1-205ENST00000395684 PPIAL4DF5H284 164 aa10.19□□□□□ -0.78
SHMT1-205ENST00000395684 H3BTX0 84 aa10.19□□□□□ -0.78
SHMT1-205ENST00000395684 SIAH2O43255 324 aa10.19□□□□□ -0.78
SHMT1-205ENST00000395684 CRYGCP07315 174 aa10.19□□□□□ -0.78
SHMT1-205ENST00000395684 NBEAP1P0C6P0 100 aa10.19□□□□□ -0.78
SHMT1-205ENST00000395684 APELAP0DMC3 54 aa10.19□□□□□ -0.78
SHMT1-205ENST00000395684 PPIAL4FP0DN26 164 aa10.19□□□□□ -0.78
SHMT1-205ENST00000395684 IGFL3Q6UXB1 125 aa10.19□□□□□ -0.78
SHMT1-205ENST00000395684 ZNF596Q8TC21 504 aa10.19□□□□□ -0.78
SHMT1-205ENST00000395684 GTSF1Q8WW33 167 aa10.19□□□□□ -0.78
SHMT1-205ENST00000395684 CCL17Q92583 94 aa10.19□□□□□ -0.78
SHMT1-205ENST00000395684 ADGRG4Q8IZF6 3080 aa10.18□□□□□ -0.78
SHMT1-205ENST00000395684 MAP1BP46821 2468 aaKnown RBP10.18□□□□□ -0.78
SHMT1-205ENST00000395684 IGHV3-21A0A0B4J1V1 117 aa10.18□□□□□ -0.78
SHMT1-205ENST00000395684 IGHV3-72A0A0B4J1Y9 119 aa10.18□□□□□ -0.78
SHMT1-205ENST00000395684 IGLC7A0M8Q6 106 aa10.18□□□□□ -0.78
SHMT1-205ENST00000395684 TMEM178BH3BS89 294 aa10.18□□□□□ -0.78
SHMT1-205ENST00000395684 TMEM108Q6UXF1 575 aa10.18□□□□□ -0.78
SHMT1-205ENST00000395684 Q6ZS92 163 aa10.18□□□□□ -0.78
SHMT1-205ENST00000395684 ATP5L2Q7Z4Y8 100 aa10.18□□□□□ -0.78
SHMT1-205ENST00000395684 LINC00311Q8N616 119 aa10.18□□□□□ -0.78
SHMT1-205ENST00000395684 PERPQ96FX8 193 aa10.18□□□□□ -0.78
SHMT1-205ENST00000395684 PRSS22Q9GZN4 317 aa10.18□□□□□ -0.78
SHMT1-205ENST00000395684 DMXL2Q8TDJ6 3036 aa10.18□□□□□ -0.78
SHMT1-205ENST00000395684 TRAV9-2A0A087WT02 112 aa10.18□□□□□ -0.78
SHMT1-205ENST00000395684 SH2D7A6NKC9 451 aaPredicted RBP10.18□□□□□ -0.78
SHMT1-205ENST00000395684 M0QZ24 198 aa10.18□□□□□ -0.78
SHMT1-205ENST00000395684 TNFRSF13BO14836 293 aaPredicted RBP10.18□□□□□ -0.78
SHMT1-205ENST00000395684 IGLL1P15814 213 aa10.18□□□□□ -0.78
SHMT1-205ENST00000395684 LEMD1Q68G75 181 aa10.18□□□□□ -0.78
SHMT1-205ENST00000395684 FAM71F2Q6NXP2 309 aa10.18□□□□□ -0.78
SHMT1-205ENST00000395684 SSX8Q7RTT4 187 aa10.18□□□□□ -0.78
SHMT1-205ENST00000395684 STXBP6Q8NFX7 210 aa10.18□□□□□ -0.78
SHMT1-205ENST00000395684 CTSZQ9UBR2 303 aa10.18□□□□□ -0.78
SHMT1-205ENST00000395684 KALRNO60229 2985 aa10.17□□□□□ -0.78
SHMT1-205ENST00000395684 FAM87AP0C7U9 286 aa10.17□□□□□ -0.78
SHMT1-205ENST00000395684 HINT1P49773 126 aaPredicted RBP10.17□□□□□ -0.78
SHMT1-205ENST00000395684 FOXA3P55318 350 aaPredicted RBP10.17□□□□□ -0.78
SHMT1-205ENST00000395684 VMA21Q3ZAQ7 101 aa10.17□□□□□ -0.78
SHMT1-205ENST00000395684 WFDC8Q8IUA0 241 aa10.17□□□□□ -0.78
SHMT1-205ENST00000395684 CLEC5AQ9NY25 188 aa10.17□□□□□ -0.78
SHMT1-205ENST00000395684 ENSAO43768 121 aaKnown RBP10.17□□□□□ -0.78
SHMT1-205ENST00000395684 HBBP68871 147 aa10.17□□□□□ -0.78
SHMT1-205ENST00000395684 RELQ04864 619 aaPredicted RBP10.17□□□□□ -0.78
SHMT1-205ENST00000395684 Q6ZVH6 145 aa10.17□□□□□ -0.78
SHMT1-205ENST00000395684 GSX1Q9H4S2 264 aaPredicted RBP10.17□□□□□ -0.78
SHMT1-205ENST00000395684 RPP21Q9H633 154 aaKnown RBP10.17□□□□□ -0.78
SHMT1-205ENST00000395684 MRPS16Q9Y3D3 137 aaKnown RBP10.17□□□□□ -0.78
SHMT1-205ENST00000395684 C19orf71A6NCJ1 209 aa10.16□□□□□ -0.78
SHMT1-205ENST00000395684 NDUFB3O43676 98 aa10.16□□□□□ -0.78
SHMT1-205ENST00000395684 TCF21O43680 179 aa10.16□□□□□ -0.78
SHMT1-205ENST00000395684 GP9P14770 177 aa10.16□□□□□ -0.78
SHMT1-205ENST00000395684 LOXP28300 417 aaPredicted RBP10.16□□□□□ -0.78
SHMT1-205ENST00000395684 CA7P43166 264 aa10.16□□□□□ -0.78
SHMT1-205ENST00000395684 ZNF137PP52743 207 aa10.16□□□□□ -0.78
SHMT1-205ENST00000395684 DLX6P56179 175 aa10.16□□□□□ -0.78
SHMT1-205ENST00000395684 FAM120AOSQ5T036 256 aa10.16□□□□□ -0.78
SHMT1-205ENST00000395684 PVRIGQ6DKI7 326 aa10.16□□□□□ -0.78
SHMT1-205ENST00000395684 C8orf31Q8N9H6 132 aa10.16□□□□□ -0.78
SHMT1-205ENST00000395684 SMIM12Q96EX1 92 aa10.16□□□□□ -0.78
SHMT1-205ENST00000395684 TRGV9Q99603 122 aa10.16□□□□□ -0.78
SHMT1-205ENST00000395684 IGHV2-26A0A0B4J1V2 119 aa10.16□□□□□ -0.78
SHMT1-205ENST00000395684 TOMM40O96008 361 aa10.16□□□□□ -0.78
SHMT1-205ENST00000395684 LTAP01374 205 aa10.16□□□□□ -0.78
SHMT1-205ENST00000395684 CNTFRP26992 372 aa10.16□□□□□ -0.78
SHMT1-205ENST00000395684 BSPH1Q075Z2 132 aa10.16□□□□□ -0.78
SHMT1-205ENST00000395684 LRRC10Q5BKY1 277 aa10.16□□□□□ -0.78
SHMT1-205ENST00000395684 PGLYRP4Q96LB8 373 aa10.16□□□□□ -0.78
SHMT1-205ENST00000395684 PPP1R14DQ9NXH3 145 aa10.16□□□□□ -0.78
SHMT1-205ENST00000395684 BSNQ9UPA5 3926 aa10.15□□□□□ -0.78
SHMT1-205ENST00000395684 TCRAP04437 139 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms