RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 SLC50A1Q9BRV3 221 aa9.83□□□□□ -0.84
SYNPO-202ENST00000394243 CEP250Q9BV73 2442 aa9.83□□□□□ -0.84
SYNPO-202ENST00000394243 ADAMTSL1Q8N6G6 1762 aa9.83□□□□□ -0.84
SYNPO-202ENST00000394243 MED12Q93074 2177 aa9.83□□□□□ -0.84
SYNPO-202ENST00000394243 IGKV2-40A0A087WW87 121 aaPredicted RBP9.83□□□□□ -0.84
SYNPO-202ENST00000394243 IGKV2D-40P01614 121 aaPredicted RBP9.83□□□□□ -0.84
SYNPO-202ENST00000394243 AZU1P20160 251 aa9.83□□□□□ -0.84
SYNPO-202ENST00000394243 LAMTOR3Q9UHA4 124 aa9.83□□□□□ -0.84
SYNPO-202ENST00000394243 MAFAQ8NHW3 353 aaPredicted RBP9.83□□□□□ -0.84
SYNPO-202ENST00000394243 IFITM1P13164 125 aa9.83□□□□□ -0.84
SYNPO-202ENST00000394243 S100A7L2Q5SY68 101 aa9.83□□□□□ -0.84
SYNPO-202ENST00000394243 TMEM158Q8WZ71 300 aa9.83□□□□□ -0.84
SYNPO-202ENST00000394243 TRGV2A0A075B6R0 118 aa9.82□□□□□ -0.84
SYNPO-202ENST00000394243 TMEM8BA6NDV4 472 aa9.82□□□□□ -0.84
SYNPO-202ENST00000394243 TFF1P04155 84 aa9.82□□□□□ -0.84
SYNPO-202ENST00000394243 PRCDQ00LT1 54 aa9.82□□□□□ -0.84
SYNPO-202ENST00000394243 PSG7Q13046 419 aa9.82□□□□□ -0.84
SYNPO-202ENST00000394243 PLEKHB2Q96CS7 222 aa9.82□□□□□ -0.84
SYNPO-202ENST00000394243 PCOLCEQ15113 449 aa9.82□□□□□ -0.84
SYNPO-202ENST00000394243 SIGLEC12Q96PQ1 595 aa9.82□□□□□ -0.84
SYNPO-202ENST00000394243 RFPL3SP0C7P2 107 aa9.82□□□□□ -0.84
SYNPO-202ENST00000394243 PRB3Q04118 309 aaPredicted RBP9.82□□□□□ -0.84
SYNPO-202ENST00000394243 ETDBQ3ZM63 59 aa9.82□□□□□ -0.84
SYNPO-202ENST00000394243 TRPM3Q9HCF6 1732 aaPredicted RBP9.82□□□□□ -0.84
SYNPO-202ENST00000394243 GAGE12HA6NDE8 117 aa9.81□□□□□ -0.84
SYNPO-202ENST00000394243 DUTP33316 252 aaKnown RBP9.81□□□□□ -0.84
SYNPO-202ENST00000394243 DOCK10Q96BY6 2186 aa9.81□□□□□ -0.84
SYNPO-202ENST00000394243 STRCP1A6NGW2 1772 aa9.81□□□□□ -0.84
SYNPO-202ENST00000394243 H3BMM0 161 aa9.81□□□□□ -0.84
SYNPO-202ENST00000394243 Q6ZT83 130 aa9.81□□□□□ -0.84
SYNPO-202ENST00000394243 UBE2WQ96B02 151 aa9.81□□□□□ -0.84
SYNPO-202ENST00000394243 PI4KAP42356 2102 aa9.81□□□□□ -0.84
SYNPO-202ENST00000394243 SMKR1H3BMG3 65 aa9.81□□□□□ -0.84
SYNPO-202ENST00000394243 GLRXP35754 106 aa9.81□□□□□ -0.84
SYNPO-202ENST00000394243 PDCD11Q14690 1871 aaKnown RBP9.81□□□□□ -0.84
SYNPO-202ENST00000394243 PMS2P5A8MQ11 134 aa9.81□□□□□ -0.84
SYNPO-202ENST00000394243 PAX4O43316 350 aa9.81□□□□□ -0.84
SYNPO-202ENST00000394243 CECR9P0C854 216 aa9.81□□□□□ -0.84
SYNPO-202ENST00000394243 MST1LQ2TV78 715 aa9.81□□□□□ -0.84
SYNPO-202ENST00000394243 WBP1Q96G27 269 aa9.81□□□□□ -0.84
SYNPO-202ENST00000394243 PDLIM4P50479 330 aa9.81□□□□□ -0.84
SYNPO-202ENST00000394243 RHOGP84095 191 aa9.81□□□□□ -0.84
SYNPO-202ENST00000394243 Q0VG73 95 aa9.81□□□□□ -0.84
SYNPO-202ENST00000394243 WFDC12Q8WWY7 111 aa9.81□□□□□ -0.84
SYNPO-202ENST00000394243 RNF115Q9Y4L5 304 aa9.81□□□□□ -0.84
SYNPO-202ENST00000394243 PSME4Q14997 1843 aa9.8□□□□□ -0.84
SYNPO-202ENST00000394243 VWC2LB2RUY7 222 aa9.8□□□□□ -0.84
SYNPO-202ENST00000394243 IGLC2P0DOY2 106 aa9.8□□□□□ -0.84
SYNPO-202ENST00000394243 IGLC3P0DOY3 106 aa9.8□□□□□ -0.84
SYNPO-202ENST00000394243 CCL3L1P16619 93 aa9.8□□□□□ -0.84
SYNPO-202ENST00000394243 ABHD17AQ96GS6 310 aa9.8□□□□□ -0.84
SYNPO-202ENST00000394243 ADARB2-AS1A8MUL3 147 aa9.8□□□□□ -0.84
SYNPO-202ENST00000394243 EFEMP2O95967 443 aa9.8□□□□□ -0.84
SYNPO-202ENST00000394243 MBNL3Q9NUK0 354 aaKnown RBP9.8□□□□□ -0.84
SYNPO-202ENST00000394243 LY96Q9Y6Y9 160 aa9.8□□□□□ -0.84
SYNPO-202ENST00000394243 LINC01549A6NIU2 74 aa9.8□□□□□ -0.84
SYNPO-202ENST00000394243 FAM90A9PA6NNJ1 464 aa9.8□□□□□ -0.84
SYNPO-202ENST00000394243 LILRA1O75019 489 aa9.8□□□□□ -0.84
SYNPO-202ENST00000394243 IGHV3-11P01762 117 aa9.8□□□□□ -0.84
SYNPO-202ENST00000394243 LINC00312Q9Y6C7 94 aa9.8□□□□□ -0.84
SYNPO-202ENST00000394243 RGPD3A6NKT7 1758 aaPredicted RBP9.8□□□□□ -0.84
SYNPO-202ENST00000394243 SIPA1L3O60292 1781 aaPredicted RBP9.8□□□□□ -0.84
SYNPO-202ENST00000394243 RGPD4Q7Z3J3 1758 aa9.8□□□□□ -0.84
SYNPO-202ENST00000394243 F8W1H4 67 aa9.8□□□□□ -0.84
SYNPO-202ENST00000394243 CELA3BP08861 270 aa9.8□□□□□ -0.84
SYNPO-202ENST00000394243 CHCHD2Q9Y6H1 151 aaPredicted RBP9.8□□□□□ -0.84
SYNPO-202ENST00000394243 TGFBR3LH3BV60 316 aa9.79□□□□□ -0.84
SYNPO-202ENST00000394243 PPDPFLQ8WWR9 84 aa9.79□□□□□ -0.84
SYNPO-202ENST00000394243 IMMP1LQ96LU5 166 aa9.79□□□□□ -0.84
SYNPO-202ENST00000394243 ABCA1O95477 2261 aa9.79□□□□□ -0.84
SYNPO-202ENST00000394243 DOCK4Q8N1I0 1966 aa9.79□□□□□ -0.84
SYNPO-202ENST00000394243 MARF1Q9Y4F3 1742 aaKnown RBP9.79□□□□□ -0.84
SYNPO-202ENST00000394243 ZNF474Q6S9Z5 364 aaPredicted RBP9.79□□□□□ -0.84
SYNPO-202ENST00000394243 SLC25A45Q8N413 288 aa9.79□□□□□ -0.84
SYNPO-202ENST00000394243 JPT2Q9H910 190 aa9.79□□□□□ -0.84
SYNPO-202ENST00000394243 NMSQ5H8A3 153 aa9.79□□□□□ -0.84
SYNPO-202ENST00000394243 TRAV40A0A0B4J280 105 aa9.79□□□□□ -0.84
SYNPO-202ENST00000394243 K7EP34 96 aa9.79□□□□□ -0.84
SYNPO-202ENST00000394243 PRSS57Q6UWY2 283 aa9.79□□□□□ -0.84
SYNPO-202ENST00000394243 A0A1B0GWJ7 208 aa9.79□□□□□ -0.84
SYNPO-202ENST00000394243 IQCF6A8MYZ5 107 aa9.79□□□□□ -0.84
SYNPO-202ENST00000394243 SPAARA0A1B0GVQ0 90 aa9.79□□□□□ -0.84
SYNPO-202ENST00000394243 IGHV2-5P01817 119 aa9.79□□□□□ -0.84
SYNPO-202ENST00000394243 Q6ZWC4 215 aa9.79□□□□□ -0.84
SYNPO-202ENST00000394243 PIMREGQ9BSJ6 248 aa9.79□□□□□ -0.84
SYNPO-202ENST00000394243 SS18L2Q9UHA2 77 aa9.79□□□□□ -0.84
SYNPO-202ENST00000394243 LYPD3O95274 346 aa9.78□□□□□ -0.84
SYNPO-202ENST00000394243 LYL1P12980 280 aa9.78□□□□□ -0.84
SYNPO-202ENST00000394243 AMN1Q8IY45 258 aa9.78□□□□□ -0.84
SYNPO-202ENST00000394243 NABP1Q96AH0 204 aa9.78□□□□□ -0.84
SYNPO-202ENST00000394243 TRACP01848 142 aa9.78□□□□□ -0.84
SYNPO-202ENST00000394243 CELA3AP09093 270 aa9.78□□□□□ -0.84
SYNPO-202ENST00000394243 ABCA7Q8IZY2 2146 aa9.78□□□□□ -0.84
SYNPO-202ENST00000394243 FAM57AQ8TBR7 257 aa9.78□□□□□ -0.84
SYNPO-202ENST00000394243 NBR2O15453 112 aa9.78□□□□□ -0.84
SYNPO-202ENST00000394243 TIAF1O95411 115 aa9.78□□□□□ -0.84
SYNPO-202ENST00000394243 SLAQ13239 276 aa9.78□□□□□ -0.84
SYNPO-202ENST00000394243 TMEM14EPQ6UXP3 125 aa9.78□□□□□ -0.84
SYNPO-202ENST00000394243 CHD3Q12873 2000 aaKnown RBP9.78□□□□□ -0.84
SYNPO-202ENST00000394243 SDK2Q58EX2 2172 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms