RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 SSR2P43308 183 aa0.63□□□□□ -2.31
VPS13A-206ENST00000376646 CAPZBP47756 277 aa0.63□□□□□ -2.31
VPS13A-206ENST00000376646 MRPS25P82663 173 aaKnown RBP0.63□□□□□ -2.31
VPS13A-206ENST00000376646 TAF1AQ15573 450 aaPredicted RBP0.63□□□□□ -2.31
VPS13A-206ENST00000376646 TEX36Q5VZQ5 186 aa0.63□□□□□ -2.31
VPS13A-206ENST00000376646 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP0.63□□□□□ -2.31
VPS13A-206ENST00000376646 PHF13Q86YI8 300 aaPredicted RBP0.63□□□□□ -2.31
VPS13A-206ENST00000376646 LINC00311Q8N616 119 aa0.63□□□□□ -2.31
VPS13A-206ENST00000376646 C12orf29Q8N999 325 aa0.63□□□□□ -2.31
VPS13A-206ENST00000376646 OR13D1Q8NGV5 346 aa0.63□□□□□ -2.31
VPS13A-206ENST00000376646 GNPDA2Q8TDQ7 276 aa0.63□□□□□ -2.31
VPS13A-206ENST00000376646 ADAT3Q96EY9 351 aaPredicted RBP0.63□□□□□ -2.31
VPS13A-206ENST00000376646 C2orf50Q96LR7 162 aa0.63□□□□□ -2.31
VPS13A-206ENST00000376646 HIST1H2BLQ99880 126 aa0.63□□□□□ -2.31
VPS13A-206ENST00000376646 C9orf16Q9BUW7 83 aa0.63□□□□□ -2.31
VPS13A-206ENST00000376646 TAS2R4Q9NYW5 299 aa0.63□□□□□ -2.31
VPS13A-206ENST00000376646 OPTCQ9UBM4 332 aa0.63□□□□□ -2.31
VPS13A-206ENST00000376646 DOCK3Q8IZD9 2030 aa0.63□□□□□ -2.31
VPS13A-206ENST00000376646 COL4A5P29400 1685 aa0.63□□□□□ -2.31
VPS13A-206ENST00000376646 KIF1BO60333 1816 aa0.63□□□□□ -2.31
VPS13A-206ENST00000376646 OR2B3O76000 313 aa0.63□□□□□ -2.31
VPS13A-206ENST00000376646 CYBAP13498 195 aa0.63□□□□□ -2.31
VPS13A-206ENST00000376646 TMED2Q15363 201 aa0.63□□□□□ -2.31
VPS13A-206ENST00000376646 OR10X1Q8NGY0 326 aa0.63□□□□□ -2.31
VPS13A-206ENST00000376646 FAM172AQ8WUF8 416 aa0.63□□□□□ -2.31
VPS13A-206ENST00000376646 PHB2Q99623 299 aa0.63□□□□□ -2.31
VPS13A-206ENST00000376646 MIXL1Q9H2W2 232 aa0.63□□□□□ -2.31
VPS13A-206ENST00000376646 TRABDQ9H4I3 376 aa0.63□□□□□ -2.31
VPS13A-206ENST00000376646 EPDR1Q9UM22 224 aa0.63□□□□□ -2.31
VPS13A-206ENST00000376646 C2CD3Q4AC94 2353 aa0.62□□□□□ -2.31
VPS13A-206ENST00000376646 GCN1Q92616 2671 aaKnown RBP0.62□□□□□ -2.31
VPS13A-206ENST00000376646 TRAV4A0A0B4J268 109 aa0.62□□□□□ -2.31
VPS13A-206ENST00000376646 J3QRK9 145 aa0.62□□□□□ -2.31
VPS13A-206ENST00000376646 HMGB3O15347 200 aaKnown RBP0.62□□□□□ -2.31
VPS13A-206ENST00000376646 SULT1B1O43704 296 aa0.62□□□□□ -2.31
VPS13A-206ENST00000376646 OR1I1O60431 355 aa0.62□□□□□ -2.31
VPS13A-206ENST00000376646 UBL3O95164 117 aa0.62□□□□□ -2.31
VPS13A-206ENST00000376646 MIFP14174 115 aa0.62□□□□□ -2.31
VPS13A-206ENST00000376646 HOXA6P31267 233 aa0.62□□□□□ -2.31
VPS13A-206ENST00000376646 PIGPP57054 158 aa0.62□□□□□ -2.31
VPS13A-206ENST00000376646 BASP1P80723 227 aaKnown RBP0.62□□□□□ -2.31
VPS13A-206ENST00000376646 LYRM7Q5U5X0 104 aa0.62□□□□□ -2.31
VPS13A-206ENST00000376646 OR11H6Q8NGC7 330 aa0.62□□□□□ -2.31
VPS13A-206ENST00000376646 OR4C6Q8NH72 309 aa0.62□□□□□ -2.31
VPS13A-206ENST00000376646 CEP19Q96LK0 163 aa0.62□□□□□ -2.31
VPS13A-206ENST00000376646 SLC35A3Q9Y2D2 325 aa0.62□□□□□ -2.31
VPS13A-206ENST00000376646 UTP11Q9Y3A2 253 aaKnown RBP0.62□□□□□ -2.31
VPS13A-206ENST00000376646 ADGRL3Q9HAR2 1447 aa0.62□□□□□ -2.31
VPS13A-206ENST00000376646 IGSF10Q6WRI0 2623 aa0.62□□□□□ -2.31
VPS13A-206ENST00000376646 SSPOA2VEC9 5147 aa0.62□□□□□ -2.31
VPS13A-206ENST00000376646 COL6A6A6NMZ7 2263 aa0.62□□□□□ -2.31
VPS13A-206ENST00000376646 HERC1Q15751 4861 aa0.62□□□□□ -2.31
VPS13A-206ENST00000376646 ALPK2Q86TB3 2170 aa0.62□□□□□ -2.31
VPS13A-206ENST00000376646 C19orf84I3L1E1 186 aa0.62□□□□□ -2.31
VPS13A-206ENST00000376646 IL9P15248 144 aa0.62□□□□□ -2.31
VPS13A-206ENST00000376646 ATP5G3P48201 142 aa0.62□□□□□ -2.31
VPS13A-206ENST00000376646 PDE6HQ13956 83 aa0.62□□□□□ -2.31
VPS13A-206ENST00000376646 TSNQ15631 228 aaKnown RBP0.62□□□□□ -2.31
VPS13A-206ENST00000376646 BRMS1LQ5PSV4 323 aa0.62□□□□□ -2.31
VPS13A-206ENST00000376646 GOLT1AQ6ZVE7 132 aa0.62□□□□□ -2.31
VPS13A-206ENST00000376646 STAG3L4Q8TBR4 150 aa0.62□□□□□ -2.31
VPS13A-206ENST00000376646 TMEM133Q9H2Q1 129 aa0.62□□□□□ -2.31
VPS13A-206ENST00000376646 RNF122Q9H9V4 155 aa0.62□□□□□ -2.31
VPS13A-206ENST00000376646 PARVBQ9HBI1 364 aa0.62□□□□□ -2.31
VPS13A-206ENST00000376646 ARMC1Q9NVT9 282 aa0.62□□□□□ -2.31
VPS13A-206ENST00000376646 NHP2Q9NX24 153 aaKnown RBP0.62□□□□□ -2.31
VPS13A-206ENST00000376646 SNURFQ9Y675 71 aa0.62□□□□□ -2.31
VPS13A-206ENST00000376646 CAMSAP1Q5T5Y3 1602 aa0.62□□□□□ -2.31
VPS13A-206ENST00000376646 RYR1P21817 5038 aa0.61□□□□□ -2.31
VPS13A-206ENST00000376646 DIDO1Q9BTC0 2240 aaKnown RBP0.61□□□□□ -2.31
VPS13A-206ENST00000376646 LYZL6O75951 148 aa0.61□□□□□ -2.31
VPS13A-206ENST00000376646 PROSCO94903 275 aa0.61□□□□□ -2.31
VPS13A-206ENST00000376646 BAALC-AS2P0C853 105 aa0.61□□□□□ -2.31
VPS13A-206ENST00000376646 RNASE4P34096 147 aaKnown RBP0.61□□□□□ -2.31
VPS13A-206ENST00000376646 SRP14P37108 136 aaKnown RBP0.61□□□□□ -2.31
VPS13A-206ENST00000376646 KRTAP10-4P60372 401 aaPredicted RBP0.61□□□□□ -2.31
VPS13A-206ENST00000376646 EIF5AP63241 154 aaKnown RBP0.61□□□□□ -2.31
VPS13A-206ENST00000376646 RHOGP84095 191 aa0.61□□□□□ -2.31
VPS13A-206ENST00000376646 ESRGQ1W209 222 aa0.61□□□□□ -2.31
VPS13A-206ENST00000376646 HACD4Q5VWC8 232 aa0.61□□□□□ -2.31
VPS13A-206ENST00000376646 OR2T10Q8NGZ9 312 aa0.61□□□□□ -2.31
VPS13A-206ENST00000376646 OR10J5Q8NHC4 309 aa0.61□□□□□ -2.31
VPS13A-206ENST00000376646 NAV3Q8IVL0 2385 aa0.61□□□□□ -2.31
VPS13A-206ENST00000376646 RIMBP3CA6NJZ7 1639 aa0.61□□□□□ -2.31
VPS13A-206ENST00000376646 RIMBP3BA6NNM3 1639 aa0.61□□□□□ -2.31
VPS13A-206ENST00000376646 RIMBP3Q9UFD9 1639 aa0.61□□□□□ -2.31
VPS13A-206ENST00000376646 TTC28Q96AY4 2481 aa0.61□□□□□ -2.31
VPS13A-206ENST00000376646 SBF1O95248 1867 aa0.61□□□□□ -2.31
VPS13A-206ENST00000376646 LRRK2Q5S007 2527 aa0.61□□□□□ -2.31
VPS13A-206ENST00000376646 TRBV19A0A075B6N1 114 aa0.61□□□□□ -2.31
VPS13A-206ENST00000376646 C7orf71A4D174 169 aa0.61□□□□□ -2.31
VPS13A-206ENST00000376646 CST8O60676 142 aa0.61□□□□□ -2.31
VPS13A-206ENST00000376646 ARL14EPLP0DKL9 152 aa0.61□□□□□ -2.31
VPS13A-206ENST00000376646 ZNF93P35789 620 aaPredicted RBP0.61□□□□□ -2.31
VPS13A-206ENST00000376646 RAB4BP61018 213 aa0.61□□□□□ -2.31
VPS13A-206ENST00000376646 DYNLT1P63172 113 aa0.61□□□□□ -2.31
VPS13A-206ENST00000376646 KRR1Q13601 381 aaKnown RBP0.61□□□□□ -2.31
VPS13A-206ENST00000376646 DEFB113Q30KQ7 82 aa0.61□□□□□ -2.31
VPS13A-206ENST00000376646 LINC00301Q8NCQ3 95 aa0.61□□□□□ -2.31
VPS13A-206ENST00000376646 PXT1Q8NFP0 134 aa0.61□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms