RNA–Protein interactions for RNA: ENST00000371429.3

NDC1-201, Transcript of NDC1 transmembrane nucleoporin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NDC1, Length 5,134 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDC1-201ENST00000371429 TRAV3A0A0B4J244 114 aa12.05□□□□□ -0.48
NDC1-201ENST00000371429 TRGV4A0A0C4DH28 118 aa12.05□□□□□ -0.48
NDC1-201ENST00000371429 CD5P06127 495 aa12.05□□□□□ -0.48
NDC1-201ENST00000371429 COX6CP09669 75 aa12.05□□□□□ -0.48
NDC1-201ENST00000371429 SMIM6P0DI80 62 aa12.05□□□□□ -0.48
NDC1-201ENST00000371429 PMCHL1Q16048 86 aa12.05□□□□□ -0.48
NDC1-201ENST00000371429 RUSC1-AS1Q66K80 236 aa12.05□□□□□ -0.48
NDC1-201ENST00000371429 ZNF256Q9Y2P7 627 aaPredicted RBP12.05□□□□□ -0.48
NDC1-201ENST00000371429 UBE2E1P51965 193 aa12.05□□□□□ -0.48
NDC1-201ENST00000371429 RPL15P61313 204 aaKnown RBP12.05□□□□□ -0.48
NDC1-201ENST00000371429 TREML4Q6UXN2 200 aa12.05□□□□□ -0.48
NDC1-201ENST00000371429 LINC00473A8K010 186 aa12.04□□□□□ -0.48
NDC1-201ENST00000371429 CR1LQ2VPA4 569 aa12.04□□□□□ -0.48
NDC1-201ENST00000371429 IFT22Q9H7X7 185 aa12.04□□□□□ -0.48
NDC1-201ENST00000371429 BEX4Q9NWD9 120 aaPredicted RBP12.04□□□□□ -0.48
NDC1-201ENST00000371429 TRBV7-1A0A0A6YYK4 115 aa12.04□□□□□ -0.48
NDC1-201ENST00000371429 UQCRFS1P47985 274 aa12.04□□□□□ -0.48
NDC1-201ENST00000371429 FHL1Q13642 323 aa12.04□□□□□ -0.48
NDC1-201ENST00000371429 GCSAMLQ5JQS6 135 aa12.04□□□□□ -0.48
NDC1-201ENST00000371429 TMEM170BQ5T4T1 132 aa12.04□□□□□ -0.48
NDC1-201ENST00000371429 C12orf54Q6X4T0 127 aa12.04□□□□□ -0.48
NDC1-201ENST00000371429 BIVMQ86UB2 503 aa12.04□□□□□ -0.48
NDC1-201ENST00000371429 ZNF688P0C7X2 276 aa12.04□□□□□ -0.48
NDC1-201ENST00000371429 ZNF581Q9P0T4 197 aa12.04□□□□□ -0.48
NDC1-201ENST00000371429 A0A1B0GW15 77 aa12.03□□□□□ -0.48
NDC1-201ENST00000371429 CCL20P78556 96 aa12.03□□□□□ -0.48
NDC1-201ENST00000371429 C18orf15Q96N68 181 aa12.03□□□□□ -0.48
NDC1-201ENST00000371429 F11RQ9Y624 299 aaKnown RBP12.03□□□□□ -0.48
NDC1-201ENST00000371429 SOX21Q9Y651 276 aaPredicted RBP12.03□□□□□ -0.48
NDC1-201ENST00000371429 IGKV1-5P01602 117 aa12.03□□□□□ -0.48
NDC1-201ENST00000371429 ERVK11-1P61568 191 aa12.03□□□□□ -0.48
NDC1-201ENST00000371429 RPL24P83731 157 aaKnown RBP12.03□□□□□ -0.48
NDC1-201ENST00000371429 LRRK1Q38SD2 2015 aa12.03□□□□□ -0.48
NDC1-201ENST00000371429 PMS2P5A8MQ11 134 aa12.03□□□□□ -0.48
NDC1-201ENST00000371429 H3BVH4 76 aa12.03□□□□□ -0.48
NDC1-201ENST00000371429 GATA4P43694 442 aa12.03□□□□□ -0.48
NDC1-201ENST00000371429 COPS9Q8WXC6 57 aa12.03□□□□□ -0.48
NDC1-201ENST00000371429 ARFGEF3Q5TH69 2177 aa12.03□□□□□ -0.48
NDC1-201ENST00000371429 KIAA1671Q9BY89 1806 aa12.03□□□□□ -0.48
NDC1-201ENST00000371429 FANCMQ8IYD8 2048 aa12.03□□□□□ -0.48
NDC1-201ENST00000371429 TP53BP1Q12888 1972 aaPredicted RBP12.02□□□□□ -0.48
NDC1-201ENST00000371429 TRGV11A0A075B6L2 103 aa12.02□□□□□ -0.48
NDC1-201ENST00000371429 C2orf88Q9BSF0 95 aa12.02□□□□□ -0.49
NDC1-201ENST00000371429 SHANK1Q9Y566 2161 aa12.02□□□□□ -0.49
NDC1-201ENST00000371429 TRAV5A0A0B4J249 113 aa12.02□□□□□ -0.49
NDC1-201ENST00000371429 IGHV1-69DA0A0B4J2H0 117 aa12.02□□□□□ -0.49
NDC1-201ENST00000371429 HIGD1CA8MV81 97 aa12.02□□□□□ -0.49
NDC1-201ENST00000371429 CIDEAO60543 219 aa12.02□□□□□ -0.49
NDC1-201ENST00000371429 WISP1O95388 367 aa12.02□□□□□ -0.49
NDC1-201ENST00000371429 IGHV1-69P01742 117 aa12.02□□□□□ -0.49
NDC1-201ENST00000371429 Q6ZR03 302 aa12.02□□□□□ -0.49
NDC1-201ENST00000371429 Q71RC1 249 aaPredicted RBP12.02□□□□□ -0.49
NDC1-201ENST00000371429 LHFPL4Q7Z7J7 247 aa12.02□□□□□ -0.49
NDC1-201ENST00000371429 Q8TCH9 128 aa12.02□□□□□ -0.49
NDC1-201ENST00000371429 K7EM74 188 aa12.02□□□□□ -0.49
NDC1-201ENST00000371429 LINC00205P59089 165 aa12.02□□□□□ -0.49
NDC1-201ENST00000371429 IFITM2Q01629 132 aa12.02□□□□□ -0.49
NDC1-201ENST00000371429 SLX1AQ9BQ83 275 aa12.02□□□□□ -0.49
NDC1-201ENST00000371429 PLXNA4Q9HCM2 1894 aa12.01□□□□□ -0.49
NDC1-201ENST00000371429 ZNF25P17030 456 aaPredicted RBP12.01□□□□□ -0.49
NDC1-201ENST00000371429 SCGB3A1Q96QR1 104 aa12.01□□□□□ -0.49
NDC1-201ENST00000371429 HIST1H4GQ99525 98 aa12.01□□□□□ -0.49
NDC1-201ENST00000371429 GGTLC1Q9BX51 225 aa12.01□□□□□ -0.49
NDC1-201ENST00000371429 OTOGLQ3ZCN5 2332 aa12.01□□□□□ -0.49
NDC1-201ENST00000371429 SUPT4H1P63272 117 aaKnown RBP12.01□□□□□ -0.49
NDC1-201ENST00000371429 QRFPP83859 136 aa12.01□□□□□ -0.49
NDC1-201ENST00000371429 NDPQ00604 133 aa12.01□□□□□ -0.49
NDC1-201ENST00000371429 ASCL4Q6XD76 172 aa12.01□□□□□ -0.49
NDC1-201ENST00000371429 ORMDL3Q8N138 153 aa12.01□□□□□ -0.49
NDC1-201ENST00000371429 ALKBH7Q9BT30 221 aaPredicted RBP12.01□□□□□ -0.49
NDC1-201ENST00000371429 MALRD1Q5VYJ5 2156 aa12.01□□□□□ -0.49
NDC1-201ENST00000371429 RNF166Q96A37 237 aaPredicted RBP12.01□□□□□ -0.49
NDC1-201ENST00000371429 TMEM50AO95807 157 aa12.01□□□□□ -0.49
NDC1-201ENST00000371429 APOHP02749 345 aaPredicted RBP12.01□□□□□ -0.49
NDC1-201ENST00000371429 TOMM7Q9P0U1 55 aa12.01□□□□□ -0.49
NDC1-201ENST00000371429 WDR81Q562E7 1941 aa12.01□□□□□ -0.49
NDC1-201ENST00000371429 PPIFP30405 207 aaKnown RBP12□□□□□ -0.49
NDC1-201ENST00000371429 BEND2Q8NDZ0 799 aa12□□□□□ -0.49
NDC1-201ENST00000371429 HS3ST6Q96QI5 342 aa12□□□□□ -0.49
NDC1-201ENST00000371429 SCRT1Q9BWW7 348 aa12□□□□□ -0.49
NDC1-201ENST00000371429 SLC25A39Q9BZJ4 359 aaPredicted RBP12□□□□□ -0.49
NDC1-201ENST00000371429 RNASE7Q9H1E1 156 aaKnown RBP12□□□□□ -0.49
NDC1-201ENST00000371429 TMEM160Q9NX00 188 aa12□□□□□ -0.49
NDC1-201ENST00000371429 OR11H12B2RN74 326 aa12□□□□□ -0.49
NDC1-201ENST00000371429 IGKV1-16P04430 117 aa12□□□□□ -0.49
NDC1-201ENST00000371429 NMSQ5H8A3 153 aa12□□□□□ -0.49
NDC1-201ENST00000371429 OR11H1Q8NG94 326 aa12□□□□□ -0.49
NDC1-201ENST00000371429 OR11H2Q8NH07 326 aa12□□□□□ -0.49
NDC1-201ENST00000371429 ZNF414Q96IQ9 312 aa12□□□□□ -0.49
NDC1-201ENST00000371429 TRGV9Q99603 122 aa12□□□□□ -0.49
NDC1-201ENST00000371429 TSC2P49815 1807 aa12□□□□□ -0.49
NDC1-201ENST00000371429 FAM223BA6NKX1 122 aa12□□□□□ -0.49
NDC1-201ENST00000371429 OR10J3Q5JRS4 329 aa12□□□□□ -0.49
NDC1-201ENST00000371429 FAM223AQ8IWN6 122 aa12□□□□□ -0.49
NDC1-201ENST00000371429 PEF1Q9UBV8 284 aaKnown RBP12□□□□□ -0.49
NDC1-201ENST00000371429 IGHV2-70DA0A0C4DH43 119 aa12□□□□□ -0.49
NDC1-201ENST00000371429 IGF2-ASQ6U949 168 aa12□□□□□ -0.49
NDC1-201ENST00000371429 TMEM183AQ8IXX5 376 aa12□□□□□ -0.49
NDC1-201ENST00000371429 Q6ZS49 121 aa11.99□□□□□ -0.49
NDC1-201ENST00000371429 OR13C6PQ8NH95 151 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms