RNA–Protein interactions for RNA: ENST00000367251.7

SYNE1-205, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,837 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-205ENST00000367251 ORMDL3Q8N138 153 aa7.46□□□□□ -1.21
SYNE1-205ENST00000367251 HIST3H2BBQ8N257 126 aa7.46□□□□□ -1.21
SYNE1-205ENST00000367251 TMEM86BQ8N661 226 aa7.46□□□□□ -1.21
SYNE1-205ENST00000367251 DUSP14O95147 198 aaKnown RBP7.46□□□□□ -1.21
SYNE1-205ENST00000367251 Q6P435 159 aa7.46□□□□□ -1.21
SYNE1-205ENST00000367251 RPUSD1Q9UJJ7 312 aaKnown RBP7.46□□□□□ -1.21
SYNE1-205ENST00000367251 COL6A6A6NMZ7 2263 aa7.46□□□□□ -1.22
SYNE1-205ENST00000367251 SERF1AO75920 110 aa7.46□□□□□ -1.22
SYNE1-205ENST00000367251 C10orf126Q8N4M7 172 aa7.46□□□□□ -1.22
SYNE1-205ENST00000367251 TSKUQ8WUA8 353 aa7.46□□□□□ -1.22
SYNE1-205ENST00000367251 ZMAT4Q9H898 229 aa7.46□□□□□ -1.22
SYNE1-205ENST00000367251 NRN1Q9NPD7 142 aa7.46□□□□□ -1.22
SYNE1-205ENST00000367251 MDC1Q14676 2089 aaKnown RBP7.46□□□□□ -1.22
SYNE1-205ENST00000367251 PPBPP02775 128 aa7.46□□□□□ -1.22
SYNE1-205ENST00000367251 CD7P09564 240 aa7.46□□□□□ -1.22
SYNE1-205ENST00000367251 TTC32Q5I0X7 151 aa7.46□□□□□ -1.22
SYNE1-205ENST00000367251 RIF1Q5UIP0 2472 aaKnown RBP7.46□□□□□ -1.22
SYNE1-205ENST00000367251 TDRD6O60522 2096 aaKnown RBP7.46□□□□□ -1.22
SYNE1-205ENST00000367251 HIGD1CA8MV81 97 aa7.46□□□□□ -1.22
SYNE1-205ENST00000367251 MTURNQ8N3F0 131 aa7.46□□□□□ -1.22
SYNE1-205ENST00000367251 FER1L6-AS1Q8NA97 138 aa7.46□□□□□ -1.22
SYNE1-205ENST00000367251 MDS2Q8NDY4 140 aa7.46□□□□□ -1.22
SYNE1-205ENST00000367251 ACACAQ13085 2346 aa7.45□□□□□ -1.22
SYNE1-205ENST00000367251 LINC01549A6NIU2 74 aa7.45□□□□□ -1.22
SYNE1-205ENST00000367251 C1QTNF9P0C862 333 aa7.45□□□□□ -1.22
SYNE1-205ENST00000367251 OCC1Q8TAD7 63 aa7.45□□□□□ -1.22
SYNE1-205ENST00000367251 GGTLC1Q9BX51 225 aa7.45□□□□□ -1.22
SYNE1-205ENST00000367251 INS-IGF2F8WCM5 200 aa7.45□□□□□ -1.22
SYNE1-205ENST00000367251 INSP01308 110 aa7.45□□□□□ -1.22
SYNE1-205ENST00000367251 IGKV1-5P01602 117 aa7.45□□□□□ -1.22
SYNE1-205ENST00000367251 CD59P13987 128 aa7.45□□□□□ -1.22
SYNE1-205ENST00000367251 BMPERQ8N8U9 685 aa7.45□□□□□ -1.22
SYNE1-205ENST00000367251 TMEM105Q8N8V8 129 aa7.45□□□□□ -1.22
SYNE1-205ENST00000367251 DLX4Q92988 240 aaPredicted RBP7.45□□□□□ -1.22
SYNE1-205ENST00000367251 FRMPD3Q5JV73 1810 aa7.45□□□□□ -1.22
SYNE1-205ENST00000367251 OR11H12B2RN74 326 aa7.45□□□□□ -1.22
SYNE1-205ENST00000367251 OR11H1Q8NG94 326 aa7.45□□□□□ -1.22
SYNE1-205ENST00000367251 OR11H2Q8NH07 326 aa7.45□□□□□ -1.22
SYNE1-205ENST00000367251 SCN8AQ9UQD0 1980 aa7.45□□□□□ -1.22
SYNE1-205ENST00000367251 IGHV1-46P01743 117 aa7.45□□□□□ -1.22
SYNE1-205ENST00000367251 MRAPQ8TCY5 172 aa7.45□□□□□ -1.22
SYNE1-205ENST00000367251 HIST1H2BLQ99880 126 aa7.45□□□□□ -1.22
SYNE1-205ENST00000367251 VSIRQ9H7M9 311 aa7.45□□□□□ -1.22
SYNE1-205ENST00000367251 NOTCH3Q9UM47 2321 aa7.45□□□□□ -1.22
SYNE1-205ENST00000367251 ADARB2-AS1A8MUL3 147 aa7.44□□□□□ -1.22
SYNE1-205ENST00000367251 THBDP07204 575 aa7.44□□□□□ -1.22
SYNE1-205ENST00000367251 CD55P08174 381 aa7.44□□□□□ -1.22
SYNE1-205ENST00000367251 MUC21Q5SSG8 566 aa7.44□□□□□ -1.22
SYNE1-205ENST00000367251 FAM201AQ5SY85 155 aa7.44□□□□□ -1.22
SYNE1-205ENST00000367251 CLDN16Q9Y5I7 305 aa7.44□□□□□ -1.22
SYNE1-205ENST00000367251 SEC16AO15027 2179 aa7.44□□□□□ -1.22
SYNE1-205ENST00000367251 CREBBPQ92793 2442 aa7.44□□□□□ -1.22
SYNE1-205ENST00000367251 OOSP1A8MZH6 123 aa7.44□□□□□ -1.22
SYNE1-205ENST00000367251 LINC00587B1AMM8 73 aa7.44□□□□□ -1.22
SYNE1-205ENST00000367251 FOXF2Q12947 444 aa7.44□□□□□ -1.22
SYNE1-205ENST00000367251 ACTL10Q5JWF8 245 aa7.44□□□□□ -1.22
SYNE1-205ENST00000367251 NCOR1P1Q9H4R4 102 aa7.44□□□□□ -1.22
SYNE1-205ENST00000367251 TRAV9-2A0A087WT02 112 aa7.44□□□□□ -1.22
SYNE1-205ENST00000367251 FABP5P3A8MUU1 101 aa7.44□□□□□ -1.22
SYNE1-205ENST00000367251 IGHG3P01860 377 aa7.44□□□□□ -1.22
SYNE1-205ENST00000367251 WNT2P09544 360 aa7.44□□□□□ -1.22
SYNE1-205ENST00000367251 Q0VFX4 171 aa7.44□□□□□ -1.22
SYNE1-205ENST00000367251 RNF125Q96EQ8 232 aa7.44□□□□□ -1.22
SYNE1-205ENST00000367251 F11RQ9Y624 299 aaKnown RBP7.44□□□□□ -1.22
SYNE1-205ENST00000367251 E9PLN8 166 aa7.44□□□□□ -1.22
SYNE1-205ENST00000367251 NDUFS6O75380 124 aaKnown RBP7.44□□□□□ -1.22
SYNE1-205ENST00000367251 TMEM95Q3KNT9 176 aa7.44□□□□□ -1.22
SYNE1-205ENST00000367251 TRGV9Q99603 122 aa7.44□□□□□ -1.22
SYNE1-205ENST00000367251 VKORC1Q9BQB6 163 aa7.44□□□□□ -1.22
SYNE1-205ENST00000367251 PSPNO60542 156 aa7.43□□□□□ -1.22
SYNE1-205ENST00000367251 ZNF585BQ52M93 769 aa7.43□□□□□ -1.22
SYNE1-205ENST00000367251 KLHDC3Q9BQ90 382 aa7.43□□□□□ -1.22
SYNE1-205ENST00000367251 VCX2Q9H322 139 aa7.43□□□□□ -1.22
SYNE1-205ENST00000367251 TANC1Q9C0D5 1861 aa7.43□□□□□ -1.22
SYNE1-205ENST00000367251 CXCL1P09341 107 aa7.43□□□□□ -1.22
SYNE1-205ENST00000367251 LEPP41159 167 aa7.43□□□□□ -1.22
SYNE1-205ENST00000367251 FOXA3P55318 350 aaPredicted RBP7.43□□□□□ -1.22
SYNE1-205ENST00000367251 ZNF600Q6ZNG1 722 aa7.43□□□□□ -1.22
SYNE1-205ENST00000367251 SLC25A15Q9Y619 301 aa7.43□□□□□ -1.22
SYNE1-205ENST00000367251 DOCK10Q96BY6 2186 aa7.43□□□□□ -1.22
SYNE1-205ENST00000367251 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP7.43□□□□□ -1.22
SYNE1-205ENST00000367251 B4DSR2 109 aa7.43□□□□□ -1.22
SYNE1-205ENST00000367251 RNASE7Q9H1E1 156 aaKnown RBP7.43□□□□□ -1.22
SYNE1-205ENST00000367251 TMEM160Q9NX00 188 aa7.43□□□□□ -1.22
SYNE1-205ENST00000367251 SCN2AQ99250 2005 aa7.43□□□□□ -1.22
SYNE1-205ENST00000367251 TRAV12-3A0A0B4J271 114 aa7.43□□□□□ -1.22
SYNE1-205ENST00000367251 LINC01551Q86U37 167 aa7.43□□□□□ -1.22
SYNE1-205ENST00000367251 SRSF8Q9BRL6 282 aaKnown RBP7.43□□□□□ -1.22
SYNE1-205ENST00000367251 LAMTOR2Q9Y2Q5 125 aa7.43□□□□□ -1.22
SYNE1-205ENST00000367251 F2Z2F3 143 aa7.42□□□□□ -1.22
SYNE1-205ENST00000367251 ATOH7Q8N100 152 aa7.42□□□□□ -1.22
SYNE1-205ENST00000367251 RNF166Q96A37 237 aaPredicted RBP7.42□□□□□ -1.22
SYNE1-205ENST00000367251 MS4A6AQ9H2W1 248 aa7.42□□□□□ -1.22
SYNE1-205ENST00000367251 CCL3L1P16619 93 aa7.42□□□□□ -1.22
SYNE1-205ENST00000367251 LINC00158P58513 81 aa7.42□□□□□ -1.22
SYNE1-205ENST00000367251 RPP25LQ8N5L8 163 aaKnown RBP7.42□□□□□ -1.22
SYNE1-205ENST00000367251 LINC00527Q9UJ94 153 aa7.42□□□□□ -1.22
SYNE1-205ENST00000367251 TRAV8-6A0A0B4J262 113 aa7.42□□□□□ -1.22
SYNE1-205ENST00000367251 A0A0U1RRA0 63 aa7.42□□□□□ -1.22
SYNE1-205ENST00000367251 TNFSF13O75888 250 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms