RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 DEFB125Q8N687 156 aa12.69□□□□□ -0.38
CLN3-203ENST00000357806 THAP8Q8NA92 274 aa12.69□□□□□ -0.38
CLN3-203ENST00000357806 GRAMD2BQ96HH9 432 aa12.69□□□□□ -0.38
CLN3-203ENST00000357806 TRGV9Q99603 122 aa12.69□□□□□ -0.38
CLN3-203ENST00000357806 SRD5A3Q9H8P0 318 aa12.69□□□□□ -0.38
CLN3-203ENST00000357806 IGKV3-7A0A075B6H7 116 aa12.68□□□□□ -0.38
CLN3-203ENST00000357806 C7orf66A4D0T2 115 aa12.68□□□□□ -0.38
CLN3-203ENST00000357806 PMS2P5A8MQ11 134 aa12.68□□□□□ -0.38
CLN3-203ENST00000357806 METTL15P1P0C7V9 234 aa12.68□□□□□ -0.38
CLN3-203ENST00000357806 PAFAH1B2P68402 229 aa12.68□□□□□ -0.38
CLN3-203ENST00000357806 ZNF90Q03938 601 aa12.68□□□□□ -0.38
CLN3-203ENST00000357806 RNF125Q96EQ8 232 aa12.68□□□□□ -0.38
CLN3-203ENST00000357806 RABAC1Q9UI14 185 aa12.68□□□□□ -0.38
CLN3-203ENST00000357806 IGKV1OR2-108A0A075B7D4 117 aa12.67□□□□□ -0.38
CLN3-203ENST00000357806 GOSR2O14653 212 aa12.67□□□□□ -0.38
CLN3-203ENST00000357806 DFFBO76075 338 aa12.67□□□□□ -0.38
CLN3-203ENST00000357806 PVALBP20472 110 aaPredicted RBP12.67□□□□□ -0.38
CLN3-203ENST00000357806 P2RY1P47900 373 aa12.67□□□□□ -0.38
CLN3-203ENST00000357806 S100A10P60903 97 aa12.67□□□□□ -0.38
CLN3-203ENST00000357806 RPL11P62913 178 aaKnown RBP12.67□□□□□ -0.38
CLN3-203ENST00000357806 OR10P1Q8NGE3 313 aa12.67□□□□□ -0.38
CLN3-203ENST00000357806 SMCO3A2RU48 225 aa12.66□□□□□ -0.38
CLN3-203ENST00000357806 PTTG1O95997 202 aa12.66□□□□□ -0.38
CLN3-203ENST00000357806 NUP62P37198 522 aaPredicted RBP12.66□□□□□ -0.38
CLN3-203ENST00000357806 EIF2B2P49770 351 aaKnown RBP12.66□□□□□ -0.38
CLN3-203ENST00000357806 DLK1P80370 383 aa12.66□□□□□ -0.38
CLN3-203ENST00000357806 LILRB2Q8N423 598 aa12.66□□□□□ -0.38
CLN3-203ENST00000357806 FAM110AQ9BQ89 295 aa12.66□□□□□ -0.38
CLN3-203ENST00000357806 PBDC1Q9BVG4 233 aa12.66□□□□□ -0.38
CLN3-203ENST00000357806 ZMAT4Q9H898 229 aa12.66□□□□□ -0.38
CLN3-203ENST00000357806 UBQLN2Q9UHD9 624 aa12.66□□□□□ -0.38
CLN3-203ENST00000357806 U3KQE9 123 aa12.66□□□□□ -0.38
CLN3-203ENST00000357806 FNDC10F2Z333 226 aa12.65□□□□□ -0.38
CLN3-203ENST00000357806 CCNKO75909 580 aa12.65□□□□□ -0.38
CLN3-203ENST00000357806 CFDP00746 253 aaPredicted RBP12.65□□□□□ -0.38
CLN3-203ENST00000357806 TFPI2P48307 235 aa12.65□□□□□ -0.38
CLN3-203ENST00000357806 LYZP61626 148 aa12.65□□□□□ -0.38
CLN3-203ENST00000357806 RAB32Q13637 225 aa12.65□□□□□ -0.38
CLN3-203ENST00000357806 TMEM144Q7Z5S9 345 aa12.65□□□□□ -0.38
CLN3-203ENST00000357806 GBGT1Q8N5D6 347 aa12.65□□□□□ -0.38
CLN3-203ENST00000357806 MGAT4CQ9UBM8 478 aa12.65□□□□□ -0.38
CLN3-203ENST00000357806 PFDN2Q9UHV9 154 aa12.65□□□□□ -0.38
CLN3-203ENST00000357806 U3KQK5 164 aa12.65□□□□□ -0.38
CLN3-203ENST00000357806 TRAV2A0A0B4J234 112 aa12.65□□□□□ -0.38
CLN3-203ENST00000357806 DNASE2O00115 360 aaPredicted RBP12.65□□□□□ -0.38
CLN3-203ENST00000357806 BCAP31P51572 246 aa12.65□□□□□ -0.38
CLN3-203ENST00000357806 CAV2P51636 162 aa12.65□□□□□ -0.38
CLN3-203ENST00000357806 RRAS2P62070 204 aaPredicted RBP12.65□□□□□ -0.38
CLN3-203ENST00000357806 IL15RAQ13261 267 aa12.65□□□□□ -0.38
CLN3-203ENST00000357806 OR2F1Q13607 317 aa12.65□□□□□ -0.38
CLN3-203ENST00000357806 ODF3L2Q3SX64 289 aa12.65□□□□□ -0.38
CLN3-203ENST00000357806 TM2D3Q9BRN9 247 aa12.65□□□□□ -0.38
CLN3-203ENST00000357806 MS4A6AQ9H2W1 248 aa12.65□□□□□ -0.38
CLN3-203ENST00000357806 HELTA6NFD8 242 aa12.64□□□□□ -0.39
CLN3-203ENST00000357806 SSNA1O43805 119 aa12.64□□□□□ -0.39
CLN3-203ENST00000357806 CMC4P56277 68 aaPredicted RBP12.64□□□□□ -0.39
CLN3-203ENST00000357806 HAGHQ16775 308 aa12.64□□□□□ -0.39
CLN3-203ENST00000357806 C16orf54Q6UWD8 224 aa12.64□□□□□ -0.39
CLN3-203ENST00000357806 LINC00322Q6ZN03 302 aaPredicted RBP12.64□□□□□ -0.39
CLN3-203ENST00000357806 GLMPQ8WWB7 406 aa12.64□□□□□ -0.39
CLN3-203ENST00000357806 NMES1Q9C002 83 aa12.64□□□□□ -0.39
CLN3-203ENST00000357806 C11orf1Q9H5F2 150 aa12.64□□□□□ -0.39
CLN3-203ENST00000357806 NPVFQ9HCQ7 196 aa12.64□□□□□ -0.39
CLN3-203ENST00000357806 RBMY1BA6NDE4 496 aaKnown RBP12.63□□□□□ -0.39
CLN3-203ENST00000357806 RBMY1EA6NEQ0 496 aaKnown RBP12.63□□□□□ -0.39
CLN3-203ENST00000357806 BUB3O43684 328 aa12.63□□□□□ -0.39
CLN3-203ENST00000357806 SIX6O95475 246 aa12.63□□□□□ -0.39
CLN3-203ENST00000357806 RBMY1DP0C7P1 496 aaKnown RBP12.63□□□□□ -0.39
CLN3-203ENST00000357806 AP2S1P53680 142 aaPredicted RBP12.63□□□□□ -0.39
CLN3-203ENST00000357806 CYCSP99999 105 aaKnown RBP12.63□□□□□ -0.39
CLN3-203ENST00000357806 BPIFCQ8NFQ6 507 aa12.63□□□□□ -0.39
CLN3-203ENST00000357806 STXBP6Q8NFX7 210 aa12.63□□□□□ -0.39
CLN3-203ENST00000357806 GGACTQ9BVM4 153 aa12.63□□□□□ -0.39
CLN3-203ENST00000357806 LYRM2Q9NU23 88 aaPredicted RBP12.63□□□□□ -0.39
CLN3-203ENST00000357806 WFDC3Q8IUB2 231 aa12.62□□□□□ -0.39
CLN3-203ENST00000357806 RCHY1Q96PM5 261 aa12.62□□□□□ -0.39
CLN3-203ENST00000357806 SPATA25Q9BR10 227 aa12.62□□□□□ -0.39
CLN3-203ENST00000357806 MAP6D1Q9H9H5 199 aa12.62□□□□□ -0.39
CLN3-203ENST00000357806 HUWE1Q7Z6Z7 4374 aaKnown RBP12.61□□□□□ -0.39
CLN3-203ENST00000357806 LOC102724200A0A096LPH7 203 aaPredicted RBP12.61□□□□□ -0.39
CLN3-203ENST00000357806 DEDDO75618 318 aa12.61□□□□□ -0.39
CLN3-203ENST00000357806 SLC38A11Q08AI6 406 aa12.61□□□□□ -0.39
CLN3-203ENST00000357806 ARL16Q0P5N6 197 aa12.61□□□□□ -0.39
CLN3-203ENST00000357806 TEPPQ6URK8 271 aa12.61□□□□□ -0.39
CLN3-203ENST00000357806 SIGLEC15Q6ZMC9 328 aa12.61□□□□□ -0.39
CLN3-203ENST00000357806 CYP2G1PQ6ZSU1 146 aa12.61□□□□□ -0.39
CLN3-203ENST00000357806 STX12Q86Y82 276 aa12.61□□□□□ -0.39
CLN3-203ENST00000357806 PPP1R14BQ96C90 147 aa12.61□□□□□ -0.39
CLN3-203ENST00000357806 CITED4Q96RK1 184 aa12.61□□□□□ -0.39
CLN3-203ENST00000357806 GGTLC1Q9BX51 225 aa12.61□□□□□ -0.39
CLN3-203ENST00000357806 FAM24AA6NFZ4 105 aa12.6□□□□□ -0.39
CLN3-203ENST00000357806 RLN2P04090 185 aa12.6□□□□□ -0.39
CLN3-203ENST00000357806 SELENOTP62341 195 aa12.6□□□□□ -0.39
CLN3-203ENST00000357806 LRRC37A5PQ49AS3 106 aa12.6□□□□□ -0.39
CLN3-203ENST00000357806 SLC45A2Q9UMX9 530 aa12.6□□□□□ -0.39
CLN3-203ENST00000357806 K7EQG2 157 aa12.59□□□□□ -0.39
CLN3-203ENST00000357806 CST7O76096 145 aa12.59□□□□□ -0.39
CLN3-203ENST00000357806 GATA2P23769 480 aaPredicted RBP12.59□□□□□ -0.39
CLN3-203ENST00000357806 S100A7P31151 101 aa12.59□□□□□ -0.39
CLN3-203ENST00000357806 SULT1A1P50225 295 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms