RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 LINC00614P0C842 121 aa9.71□□□□□ -0.85
COL9A1-202ENST00000357250 SRSF1Q07955 248 aaKnown RBP eCLIP9.71□□□□□ -0.85
COL9A1-202ENST00000357250 TTC32Q5I0X7 151 aa9.71□□□□□ -0.85
COL9A1-202ENST00000357250 NUP37Q8NFH4 326 aa9.71□□□□□ -0.85
COL9A1-202ENST00000357250 DUX3Q96PT4 197 aa9.71□□□□□ -0.85
COL9A1-202ENST00000357250 TRGV9Q99603 122 aa9.71□□□□□ -0.85
COL9A1-202ENST00000357250 RNASE7Q9H1E1 156 aaKnown RBP9.71□□□□□ -0.85
COL9A1-202ENST00000357250 IGKV1-27A0A075B6S5 117 aa9.71□□□□□ -0.86
COL9A1-202ENST00000357250 TMEM50AO95807 157 aa9.71□□□□□ -0.86
COL9A1-202ENST00000357250 ADMP35318 185 aa9.71□□□□□ -0.86
COL9A1-202ENST00000357250 NIT1Q86X76 327 aa9.71□□□□□ -0.86
COL9A1-202ENST00000357250 A0A1B0GV90 55 aa9.71□□□□□ -0.86
COL9A1-202ENST00000357250 RHOGP84095 191 aa9.71□□□□□ -0.86
COL9A1-202ENST00000357250 PLAURQ03405 335 aa9.71□□□□□ -0.86
COL9A1-202ENST00000357250 C14orf144Q96I85 54 aa9.71□□□□□ -0.86
COL9A1-202ENST00000357250 JMJD8Q96S16 334 aa9.71□□□□□ -0.86
COL9A1-202ENST00000357250 ST20Q9HBF5 79 aa9.71□□□□□ -0.86
COL9A1-202ENST00000357250 CLDN16Q9Y5I7 305 aa9.71□□□□□ -0.86
COL9A1-202ENST00000357250 SLC25A15Q9Y619 301 aa9.71□□□□□ -0.86
COL9A1-202ENST00000357250 CMC4P56277 68 aaPredicted RBP9.7□□□□□ -0.86
COL9A1-202ENST00000357250 MDS2Q8NDY4 140 aa9.7□□□□□ -0.86
COL9A1-202ENST00000357250 ZNF418Q8TF45 676 aaPredicted RBP9.7□□□□□ -0.86
COL9A1-202ENST00000357250 SLC25A2Q9BXI2 301 aa9.7□□□□□ -0.86
COL9A1-202ENST00000357250 FRMPD3Q5JV73 1810 aa9.7□□□□□ -0.86
COL9A1-202ENST00000357250 IGHV3OR16-10A0A075B7F0 116 aa9.7□□□□□ -0.86
COL9A1-202ENST00000357250 ETV2O00321 342 aaPredicted RBP9.7□□□□□ -0.86
COL9A1-202ENST00000357250 IGHV3-23P01764 117 aa9.7□□□□□ -0.86
COL9A1-202ENST00000357250 IGHG3P01860 377 aa9.7□□□□□ -0.86
COL9A1-202ENST00000357250 SRSF3P84103 164 aaKnown RBP9.7□□□□□ -0.86
COL9A1-202ENST00000357250 TIMM23O14925 209 aa9.7□□□□□ -0.86
COL9A1-202ENST00000357250 SPSB3Q6PJ21 355 aa9.7□□□□□ -0.86
COL9A1-202ENST00000357250 SRSF8Q9BRL6 282 aaKnown RBP9.7□□□□□ -0.86
COL9A1-202ENST00000357250 MS4A6AQ9H2W1 248 aa9.7□□□□□ -0.86
COL9A1-202ENST00000357250 CYSLTR1Q9Y271 337 aa9.7□□□□□ -0.86
COL9A1-202ENST00000357250 TRGV11A0A075B6L2 103 aa9.69□□□□□ -0.86
COL9A1-202ENST00000357250 MBD3L4A6NDZ8 208 aaPredicted RBP9.69□□□□□ -0.86
COL9A1-202ENST00000357250 MBD3L3A6NE82 208 aaPredicted RBP9.69□□□□□ -0.86
COL9A1-202ENST00000357250 MBD3L5A6NJ08 208 aaPredicted RBP9.69□□□□□ -0.86
COL9A1-202ENST00000357250 COLCA2A8K830 154 aa9.69□□□□□ -0.86
COL9A1-202ENST00000357250 COLCA1Q6ZS62 124 aa9.69□□□□□ -0.86
COL9A1-202ENST00000357250 MBD3L2Q8NHZ7 208 aaPredicted RBP9.69□□□□□ -0.86
COL9A1-202ENST00000357250 IGHV3-49A0A0A0MS15 119 aa9.69□□□□□ -0.86
COL9A1-202ENST00000357250 DPM2O94777 84 aa9.69□□□□□ -0.86
COL9A1-202ENST00000357250 IFI27P40305 119 aaPredicted RBP9.69□□□□□ -0.86
COL9A1-202ENST00000357250 LYPD1Q8N2G4 141 aa9.69□□□□□ -0.86
COL9A1-202ENST00000357250 A0A1B0GWJ7 208 aa9.69□□□□□ -0.86
COL9A1-202ENST00000357250 IGKV3-20P01619 116 aa9.69□□□□□ -0.86
COL9A1-202ENST00000357250 WNT2P09544 360 aa9.69□□□□□ -0.86
COL9A1-202ENST00000357250 FAM19A2Q8N3H0 131 aa9.69□□□□□ -0.86
COL9A1-202ENST00000357250 C5orf63A6NC05 138 aa9.68□□□□□ -0.86
COL9A1-202ENST00000357250 PYYP10082 97 aa9.68□□□□□ -0.86
COL9A1-202ENST00000357250 ZNF524Q96C55 264 aa9.68□□□□□ -0.86
COL9A1-202ENST00000357250 S4R3C0 116 aa9.68□□□□□ -0.86
COL9A1-202ENST00000357250 IGHV2-26A0A0B4J1V2 119 aa9.68□□□□□ -0.86
COL9A1-202ENST00000357250 TMEM178BH3BS89 294 aa9.68□□□□□ -0.86
COL9A1-202ENST00000357250 M0R1W7 72 aa9.68□□□□□ -0.86
COL9A1-202ENST00000357250 HAX1O00165 279 aa9.68□□□□□ -0.86
COL9A1-202ENST00000357250 TGFAP01135 160 aa9.68□□□□□ -0.86
COL9A1-202ENST00000357250 IGKV1-5P01602 117 aa9.68□□□□□ -0.86
COL9A1-202ENST00000357250 IGHV1-8P0DP01 117 aa9.68□□□□□ -0.86
COL9A1-202ENST00000357250 Q0VFX4 171 aa9.68□□□□□ -0.86
COL9A1-202ENST00000357250 MBNL3Q9NUK0 354 aaKnown RBP9.68□□□□□ -0.86
COL9A1-202ENST00000357250 ZGRF1Q86YA3 2104 aa9.68□□□□□ -0.86
COL9A1-202ENST00000357250 PIEZO2Q9H5I5 2752 aa9.68□□□□□ -0.86
COL9A1-202ENST00000357250 PSPNO60542 156 aa9.68□□□□□ -0.86
COL9A1-202ENST00000357250 RNASE4P34096 147 aaKnown RBP9.68□□□□□ -0.86
COL9A1-202ENST00000357250 GNG5P63218 68 aa9.68□□□□□ -0.86
COL9A1-202ENST00000357250 BMPERQ8N8U9 685 aa9.68□□□□□ -0.86
COL9A1-202ENST00000357250 TANC1Q9C0D5 1861 aa9.68□□□□□ -0.86
COL9A1-202ENST00000357250 B3GALT5-AS1P59052 145 aa9.68□□□□□ -0.86
COL9A1-202ENST00000357250 Q6P435 159 aa9.68□□□□□ -0.86
COL9A1-202ENST00000357250 DMRTA2Q96SC8 542 aa9.68□□□□□ -0.86
COL9A1-202ENST00000357250 IGHV3-66A0A0C4DH42 116 aa9.67□□□□□ -0.86
COL9A1-202ENST00000357250 PAX8Q06710 450 aa9.67□□□□□ -0.86
COL9A1-202ENST00000357250 ZNF672Q499Z4 452 aaPredicted RBP9.67□□□□□ -0.86
COL9A1-202ENST00000357250 RPP25LQ8N5L8 163 aaKnown RBP9.67□□□□□ -0.86
COL9A1-202ENST00000357250 LINC01587Q99440 93 aa9.67□□□□□ -0.86
COL9A1-202ENST00000357250 YAE1D1Q9NRH1 226 aa9.67□□□□□ -0.86
COL9A1-202ENST00000357250 SPCS1Q9Y6A9 102 aa9.67□□□□□ -0.86
COL9A1-202ENST00000357250 TECTAO75443 2155 aa9.67□□□□□ -0.86
COL9A1-202ENST00000357250 EFNA4P52798 201 aa9.67□□□□□ -0.86
COL9A1-202ENST00000357250 GCSAMLQ5JQS6 135 aa9.67□□□□□ -0.86
COL9A1-202ENST00000357250 LINC01551Q86U37 167 aa9.67□□□□□ -0.86
COL9A1-202ENST00000357250 ITLN2Q8WWU7 325 aaPredicted RBP9.67□□□□□ -0.86
COL9A1-202ENST00000357250 HIST1H2BLQ99880 126 aa9.67□□□□□ -0.86
COL9A1-202ENST00000357250 DENND4CQ5VZ89 1909 aa9.67□□□□□ -0.86
COL9A1-202ENST00000357250 TFF1P04155 84 aa9.67□□□□□ -0.86
COL9A1-202ENST00000357250 SEC11AP67812 179 aa9.67□□□□□ -0.86
COL9A1-202ENST00000357250 PTPRQQ9UMZ3 2332 aa9.67□□□□□ -0.86
COL9A1-202ENST00000357250 PGPEP1LA6NFU8 196 aa9.67□□□□□ -0.86
COL9A1-202ENST00000357250 C20orf204Q6ZNR8 217 aa9.67□□□□□ -0.86
COL9A1-202ENST00000357250 RNF144BQ7Z419 303 aa9.67□□□□□ -0.86
COL9A1-202ENST00000357250 SPACA3Q8IXA5 215 aa9.67□□□□□ -0.86
COL9A1-202ENST00000357250 HIST3H2BBQ8N257 126 aa9.67□□□□□ -0.86
COL9A1-202ENST00000357250 SPOCK3Q9BQ16 436 aa9.67□□□□□ -0.86
COL9A1-202ENST00000357250 NCOR1P1Q9H4R4 102 aa9.67□□□□□ -0.86
COL9A1-202ENST00000357250 CNTFRP26992 372 aa9.66□□□□□ -0.86
COL9A1-202ENST00000357250 A0A1B0GWB2 263 aa9.66□□□□□ -0.86
COL9A1-202ENST00000357250 CDKN1AP38936 164 aa9.66□□□□□ -0.86
COL9A1-202ENST00000357250 VDAC2P45880 294 aaPredicted RBP9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 129.4 ms